Wall clock time and date at job start Mon Mar 30 2020 01:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36801 * 120.00221 * 2 1 4 4 H 1.07997 * 120.00155 * 138.64786 * 3 2 1 5 5 C 1.39097 * 119.99783 * 318.63873 * 3 2 1 6 6 N 1.31328 * 119.99832 * 161.27675 * 5 3 2 7 7 Si 1.86798 * 120.00248 * 341.28556 * 5 3 2 8 8 H 1.48498 * 109.47304 * 93.29547 * 7 5 3 9 9 H 1.48501 * 109.47228 * 213.30113 * 7 5 3 10 10 H 1.48504 * 109.46901 * 333.29764 * 7 5 3 11 11 C 1.34778 * 119.99740 * 179.97438 * 2 1 3 12 12 O 1.21581 * 120.00030 * 5.24789 * 11 2 1 13 13 C 1.47844 * 119.99886 * 185.24999 * 11 2 1 14 14 C 1.40462 * 119.73129 * 142.99223 * 13 11 2 15 15 C 1.36083 * 120.75594 * 180.02562 * 14 13 11 16 16 C 1.40031 * 119.87607 * 0.02562 * 15 14 13 17 17 C 1.41777 * 121.87022 * 179.97438 * 16 15 14 18 18 N 1.37854 * 120.89530 * 0.02562 * 17 16 15 19 19 N 1.32570 * 118.21725 * 179.77299 * 17 16 15 20 20 C 1.32371 * 121.50164 * 0.50480 * 19 17 16 21 21 N 1.31148 * 122.95557 * 359.47571 * 20 19 17 22 22 C 1.34204 * 120.49071 * 0.25073 * 21 20 19 23 23 C 1.38685 * 119.72975 * 323.00641 * 13 11 2 24 24 H 1.08996 * 109.47544 * 264.69494 * 1 2 3 25 25 H 1.09005 * 109.46685 * 24.69277 * 1 2 3 26 26 H 1.09002 * 109.47387 * 144.69043 * 1 2 3 27 27 H 0.97006 * 120.00314 * 180.02562 * 6 5 3 28 28 H 1.07997 * 119.61987 * 0.04032 * 14 13 11 29 29 H 1.07991 * 120.05970 * 179.97438 * 15 14 13 30 30 H 0.97006 * 119.99469 * 359.97438 * 18 17 16 31 31 H 0.96998 * 120.00634 * 179.97438 * 18 17 16 32 32 H 1.07993 * 118.52431 * 179.74694 * 20 19 17 33 33 H 1.07997 * 120.32619 * 0.02562 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1847 0.0000 4 1 3.0270 1.3013 0.6179 5 6 1.7137 2.2391 -0.7960 6 7 2.1159 3.4632 -0.5419 7 14 0.5571 1.9140 -2.2263 8 1 -0.8473 2.0916 -1.7776 9 1 0.8497 2.8678 -3.3263 10 1 0.7494 0.5239 -2.7123 11 6 2.1388 -1.1672 0.0005 12 8 1.5347 -2.2180 -0.0953 13 6 3.6126 -1.1699 0.1177 14 6 4.2506 -2.1774 0.8599 15 6 5.6057 -2.1997 0.9818 16 6 6.3781 -1.2091 0.3630 17 6 7.7923 -1.1912 0.4627 18 7 8.4636 -2.1587 1.1794 19 7 8.4521 -0.2220 -0.1560 20 6 7.8196 0.7159 -0.8434 21 7 6.5147 0.7500 -0.9700 22 6 5.7494 -0.1865 -0.3883 23 6 4.3539 -0.1774 -0.5059 24 1 -0.3634 -0.0950 1.0232 25 1 -0.3633 0.9338 -0.4293 26 1 -0.3634 -0.8386 -0.5940 27 1 1.8121 4.1986 -1.0968 28 1 3.6588 -2.9433 1.3390 29 1 6.0845 -2.9793 1.5555 30 1 7.9680 -2.8640 1.6243 31 1 9.4314 -2.1343 1.2388 32 1 8.4046 1.4852 -1.3252 33 1 3.8598 0.5959 -1.0751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292415812.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:52 Heat of formation + Delta-G solvation = 31.519109 kcal Electronic energy + Delta-G solvation = -20413.512429 eV Core-core repulsion = 17246.062134 eV Total energy + Delta-G solvation = -3167.450295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.25965 -40.82982 -38.11041 -37.05322 -36.85781 -34.01617 -33.14460 -32.33554 -30.78463 -28.51362 -27.20358 -25.58561 -25.08266 -22.89321 -21.61278 -20.15969 -19.61730 -18.73388 -18.37218 -17.64227 -17.11604 -16.58373 -16.39008 -16.14525 -16.00533 -15.66573 -14.91285 -14.68212 -14.65048 -14.57811 -14.10594 -13.68850 -13.37152 -13.25412 -12.99282 -12.83540 -12.75859 -12.21706 -11.94251 -11.59608 -11.24413 -10.72185 -10.57288 -10.12245 -10.04555 -9.77860 -8.85373 -8.53394 -6.20178 -0.60967 -0.30006 0.98781 1.17124 1.30485 1.41648 1.59679 2.14018 2.26083 2.28653 2.53130 2.88121 3.20019 3.29632 3.36320 3.60001 3.85398 3.94446 4.25776 4.29408 4.37950 4.51877 4.55845 4.73585 4.79320 5.02001 5.09938 5.33528 5.37357 5.49905 5.62410 5.96492 5.99593 6.14252 6.16276 6.77554 6.84810 7.24103 7.40330 7.59988 8.58226 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.006617 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.572551 B = 4230.801079 C = 5188.836735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.466 5.466 3 C -0.349 4.349 4 H 0.082 0.918 5 C 0.035 3.965 6 N -0.887 5.887 7 Si 0.927 3.073 8 H -0.248 1.248 9 H -0.283 1.283 10 H -0.271 1.271 11 C 0.509 3.491 12 O -0.608 6.608 13 C -0.080 4.080 14 C -0.100 4.100 15 C -0.065 4.065 16 C -0.197 4.197 17 C 0.476 3.524 18 N -0.793 5.793 19 N -0.610 5.610 20 C 0.337 3.663 21 N -0.580 5.580 22 C 0.151 3.849 23 C -0.069 4.069 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.282 0.718 28 H 0.147 0.853 29 H 0.181 0.819 30 H 0.427 0.573 31 H 0.423 0.577 32 H 0.219 0.781 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 -9.841 3.358 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.185 5.185 3 C -0.476 4.476 4 H 0.100 0.900 5 C -0.171 4.171 6 N -0.522 5.522 7 Si 0.752 3.248 8 H -0.173 1.173 9 H -0.209 1.209 10 H -0.196 1.196 11 C 0.299 3.701 12 O -0.495 6.495 13 C -0.086 4.086 14 C -0.119 4.119 15 C -0.085 4.085 16 C -0.205 4.205 17 C 0.216 3.784 18 N -0.340 5.340 19 N -0.339 5.339 20 C 0.046 3.954 21 N -0.300 5.300 22 C 0.028 3.972 23 C -0.089 4.089 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.165 0.835 29 H 0.198 0.802 30 H 0.261 0.739 31 H 0.256 0.744 32 H 0.236 0.764 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.496 -9.342 2.786 14.325 hybrid contribution -1.039 -0.142 -0.207 1.069 sum 9.456 -9.484 2.579 13.639 Atomic orbital electron populations 1.21972 0.80993 1.01746 1.02700 1.43627 1.05595 1.05323 1.63976 1.18881 1.13428 0.88589 1.26709 0.90011 1.25877 0.98318 0.94229 0.98701 1.69752 1.44491 0.99583 1.38390 0.86135 0.80187 0.78537 0.79921 1.17320 1.20914 1.19598 1.18683 0.87783 0.83538 0.80049 1.90606 1.70434 1.32090 1.56387 1.20011 0.92929 0.96384 0.99283 1.20984 0.95342 0.97355 0.98228 1.20890 0.92494 0.97286 0.97823 1.19242 0.94392 1.00717 1.06179 1.18747 0.86692 0.87268 0.85681 1.42007 1.11406 1.27303 1.53243 1.67989 1.40564 1.07175 1.18217 1.25072 0.87485 0.93375 0.89453 1.68808 1.07926 1.27145 1.26083 1.18832 0.93861 0.90918 0.93611 1.21706 0.91238 0.97255 0.98673 0.91189 0.91653 0.91240 0.90744 0.83519 0.80214 0.73884 0.74401 0.76440 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.91 8.98 127.77 1.15 4.06 16 2 N -0.47 -22.91 2.51 -662.23 -1.66 -24.57 16 3 C -0.35 -18.55 6.64 84.12 0.56 -18.00 16 4 H 0.08 4.76 6.54 -2.91 -0.02 4.75 16 5 C 0.03 1.84 5.30 84.97 0.45 2.29 16 6 N -0.89 -49.58 13.95 21.69 0.30 -49.28 16 7 Si 0.93 41.93 25.06 68.60 1.72 43.65 16 8 H -0.25 -10.18 6.65 99.48 0.66 -9.52 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 C 0.51 24.49 7.34 86.79 0.64 25.13 16 12 O -0.61 -30.42 16.48 -3.97 -0.07 -30.49 16 13 C -0.08 -3.46 5.43 -20.09 -0.11 -3.56 16 14 C -0.10 -3.30 9.52 22.31 0.21 -3.08 16 15 C -0.06 -1.67 9.51 22.20 0.21 -1.46 16 16 C -0.20 -6.12 5.76 -21.14 -0.12 -6.24 16 17 C 0.48 12.02 7.87 134.06 1.06 13.07 16 18 N -0.79 -10.57 8.98 -54.34 -0.49 -11.06 16 19 N -0.61 -17.21 10.43 -196.68 -2.05 -19.26 16 20 C 0.34 10.55 12.22 180.90 2.21 12.76 16 21 N -0.58 -23.08 10.44 -194.00 -2.03 -25.10 16 22 C 0.15 6.08 6.61 40.05 0.26 6.34 16 23 C -0.07 -3.10 7.73 22.82 0.18 -2.93 16 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.07 2.76 3.74 -2.38 -0.01 2.75 16 26 H 0.07 2.86 7.52 -2.39 -0.02 2.84 16 27 H 0.28 14.67 8.31 -92.70 -0.77 13.90 16 28 H 0.15 4.34 8.01 -2.91 -0.02 4.31 16 29 H 0.18 2.45 6.55 -2.92 -0.02 2.43 16 30 H 0.43 3.13 7.06 -92.70 -0.65 2.48 16 31 H 0.42 3.97 8.95 -92.71 -0.83 3.14 16 32 H 0.22 5.14 8.06 -2.91 -0.02 5.11 16 33 H 0.14 7.19 5.77 -2.91 -0.02 7.17 16 Total: -1.00 -71.66 280.28 2.10 -69.57 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -0.33 Total: 18.16 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 6.69 Total: 28.38 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -5.92 Total: -129.27 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.07 Total: -30.49 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.72 Total: 43.65 kcal Total: -71.66 2.10 -69.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292415812.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.088 kcal (2) G-P(sol) polarization free energy of solvation -71.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds