Wall clock time and date at job start Mon Mar 30 2020 01:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28425 * 125.06832 * 2 1 4 4 C 1.31647 * 110.82263 * 179.97438 * 3 2 1 5 5 C 1.48455 * 126.20708 * 180.02562 * 4 3 2 6 6 C 1.39735 * 120.53050 * 359.96247 * 5 4 3 7 7 C 1.38422 * 118.31611 * 179.97438 * 6 5 4 8 8 C 1.38308 * 119.27668 * 0.02562 * 7 6 5 9 9 N 1.31883 * 121.02268 * 0.02562 * 8 7 6 10 10 C 1.31756 * 121.85032 * 359.72603 * 9 8 7 11 11 C 1.40653 * 107.58997 * 0.02562 * 4 3 2 12 12 C 1.36719 * 125.07110 * 180.32083 * 2 1 3 13 13 C 1.47053 * 126.78205 * 0.03718 * 12 2 1 14 14 O 1.21678 * 120.00069 * 5.82699 * 13 12 2 15 15 N 1.34772 * 119.99958 * 185.82601 * 13 12 2 16 16 C 1.36842 * 120.00229 * 185.19148 * 15 13 12 17 17 H 1.08008 * 119.99610 * 359.97438 * 16 15 13 18 18 C 1.39047 * 120.00344 * 180.02562 * 16 15 13 19 19 N 1.31363 * 119.99929 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00003 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47183 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47116 * 120.00185 * 20 18 16 23 23 H 1.48500 * 109.46691 * 239.99906 * 20 18 16 24 24 H 1.09000 * 109.47275 * 86.00867 * 1 2 3 25 25 H 1.09003 * 109.47124 * 206.00885 * 1 2 3 26 26 H 1.09002 * 109.47297 * 326.00555 * 1 2 3 27 27 H 1.08007 * 120.84139 * 0.02562 * 6 5 4 28 28 H 1.07999 * 120.36203 * 180.02562 * 7 6 5 29 29 H 1.08003 * 119.48993 * 179.97438 * 8 7 6 30 30 H 1.07996 * 119.69845 * 180.29219 * 10 9 8 31 31 H 1.08007 * 127.35123 * 180.02562 * 11 4 3 32 32 H 0.97000 * 119.99959 * 5.19563 * 15 13 12 33 33 H 0.96997 * 119.99894 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2028 1.0511 0.0000 4 6 3.4788 0.7272 0.0006 5 6 4.6235 1.6724 0.0013 6 6 4.4045 3.0525 0.0006 7 6 5.5052 3.8919 0.0019 8 6 6.7746 3.3429 0.0032 9 7 6.9497 2.0357 0.0027 10 6 5.9328 1.1979 0.0064 11 6 3.5608 -0.6770 0.0003 12 6 2.2505 -1.1189 -0.0063 13 6 1.7925 -2.5163 -0.0149 14 8 0.6069 -2.7673 -0.1240 15 7 2.6859 -3.5190 0.0981 16 6 2.2738 -4.8188 -0.0163 17 1 1.2324 -5.0412 -0.1967 18 6 3.1955 -5.8533 0.1008 19 7 4.4619 -5.5829 0.3217 20 14 2.6329 -7.6277 -0.0561 21 1 1.1687 -7.6630 -0.3011 22 1 3.3409 -8.2730 -1.1909 23 1 2.9420 -8.3578 1.1996 24 1 -0.3634 0.0715 -1.0252 25 1 -0.3633 -0.9236 0.4507 26 1 -0.3634 0.8520 0.5746 27 1 3.4019 3.4540 0.0000 28 1 5.3741 4.9639 0.0018 29 1 7.6358 3.9946 0.0037 30 1 6.1164 0.1337 0.0107 31 1 4.4562 -1.2811 0.0010 32 1 3.6212 -3.3192 0.2606 33 1 5.1047 -6.3046 0.4038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292649449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:24 Heat of formation + Delta-G solvation = 73.122454 kcal Electronic energy + Delta-G solvation = -19524.996965 eV Core-core repulsion = 16359.350726 eV Total energy + Delta-G solvation = -3165.646238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.08679 -39.87233 -38.01993 -34.43271 -33.71912 -32.29401 -31.63872 -30.84786 -30.21473 -26.62822 -25.37597 -23.70763 -23.41455 -22.01207 -20.60615 -19.04323 -18.25389 -17.13437 -16.62228 -16.12186 -15.87820 -15.38333 -15.28238 -14.51783 -14.02416 -13.89792 -13.62150 -13.55914 -13.29116 -13.02390 -12.83914 -12.53117 -12.03641 -11.80729 -11.69873 -11.25257 -10.53217 -10.48422 -10.39993 -10.17507 -9.77644 -9.52652 -9.48422 -8.75370 -8.63063 -8.22811 -8.08665 -6.66914 -4.02156 0.89153 1.27970 1.88414 2.79992 2.95689 3.10122 3.16842 3.23470 3.98540 3.99239 4.11528 4.35078 4.56821 4.72855 4.84593 4.95297 5.00389 5.13846 5.16687 5.42351 5.48703 5.62909 5.63960 5.80024 5.89174 5.99830 6.10064 6.15686 6.39422 6.64591 6.80362 7.10332 7.32666 7.79158 7.97718 8.28389 8.40983 8.91515 9.25764 9.77170 10.49296 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.004503 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.955221 B = 6216.144839 C = 7461.625513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.262 5.262 3 N -0.285 5.285 4 C 0.052 3.948 5 C -0.038 4.038 6 C -0.061 4.061 7 C -0.174 4.174 8 C 0.088 3.912 9 N -0.481 5.481 10 C 0.115 3.885 11 C -0.202 4.202 12 C 0.017 3.983 13 C 0.487 3.513 14 O -0.600 6.600 15 N -0.523 5.523 16 C -0.299 4.299 17 H 0.111 0.889 18 C 0.028 3.972 19 N -0.882 5.882 20 Si 0.936 3.064 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.398 0.602 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 13.825 -0.034 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.049 5.049 3 N -0.119 5.119 4 C -0.103 4.103 5 C -0.042 4.042 6 C -0.088 4.088 7 C -0.193 4.193 8 C -0.069 4.069 9 N -0.189 5.189 10 C -0.044 4.044 11 C -0.231 4.231 12 C -0.111 4.111 13 C 0.273 3.727 14 O -0.489 6.489 15 N -0.157 5.157 16 C -0.429 4.429 17 H 0.128 0.872 18 C -0.177 4.177 19 N -0.521 5.521 20 Si 0.762 3.238 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.204 1.204 24 H 0.098 0.902 25 H 0.135 0.865 26 H 0.102 0.898 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.171 0.829 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.232 0.768 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.710 14.065 -0.094 14.083 hybrid contribution -0.028 -0.998 -0.008 0.999 sum 0.682 13.067 -0.102 13.085 Atomic orbital electron populations 1.22304 0.72658 1.05851 1.04175 1.45412 1.07667 1.01765 1.50028 1.73146 1.03048 1.13949 1.21733 1.19921 0.89866 0.92007 1.08509 1.18806 0.92006 0.92252 1.01104 1.21652 0.99905 0.92285 0.94931 1.22059 0.93542 1.01027 1.02715 1.22768 0.96584 0.91598 0.95985 1.67707 1.34922 1.04218 1.12051 1.22869 0.86772 1.00228 0.94483 1.22128 0.96441 0.93672 1.10812 1.21907 0.90309 0.90812 1.08075 1.16402 0.86532 0.82074 0.87661 1.90596 1.15906 1.83734 1.58622 1.41626 1.09993 1.05268 1.58765 1.19873 0.96671 0.80375 1.45973 0.87162 1.25425 0.94824 1.01111 0.96308 1.69597 1.01787 1.34521 1.46155 0.85696 0.79284 0.80738 0.78071 1.18916 1.20378 1.20393 0.90250 0.86465 0.89813 0.84416 0.84827 0.82927 0.82057 0.82167 0.76769 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.86 59.84 0.65 1.99 16 2 N -0.26 -4.80 3.75 -63.92 -0.24 -5.04 16 3 N -0.29 -5.04 11.65 33.40 0.39 -4.65 16 4 C 0.05 0.90 7.00 -82.82 -0.58 0.32 16 5 C -0.04 -0.56 5.89 -104.75 -0.62 -1.18 16 6 C -0.06 -0.76 9.82 -38.95 -0.38 -1.15 16 7 C -0.17 -1.79 10.10 -39.49 -0.40 -2.19 16 8 C 0.09 0.97 11.17 -17.50 -0.20 0.78 16 9 N -0.48 -6.62 10.35 -12.98 -0.13 -6.76 16 10 C 0.12 1.63 10.75 -17.20 -0.18 1.44 16 11 C -0.20 -3.66 9.85 -38.65 -0.38 -4.04 16 12 C 0.02 0.35 6.94 -82.10 -0.57 -0.22 16 13 C 0.49 11.55 7.73 -12.69 -0.10 11.45 16 14 O -0.60 -15.44 14.25 5.21 0.07 -15.37 16 15 N -0.52 -12.91 5.25 -12.07 -0.06 -12.97 16 16 C -0.30 -7.89 9.67 -15.02 -0.15 -8.03 16 17 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 18 C 0.03 0.71 5.50 -17.45 -0.10 0.61 16 19 N -0.88 -22.57 13.05 55.50 0.72 -21.85 16 20 Si 0.94 19.71 29.55 -169.99 -5.02 14.69 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.12 1.93 6.21 -51.93 -0.32 1.61 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.14 1.62 7.94 -52.48 -0.42 1.21 16 28 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.16 2.10 7.13 -52.49 -0.37 1.72 16 31 H 0.16 2.62 7.02 -52.48 -0.37 2.25 16 32 H 0.40 9.38 6.96 -40.82 -0.28 9.10 16 33 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 297.60 15.07 4.48 4.48 Total: -1.00 -30.45 297.60 -5.76 -36.20 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -2.97 Total: 11.47 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.00 Total: -0.21 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.68 Total: -51.27 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.07 Total: -15.37 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.45 -5.76 -36.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292649449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.326 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds