Wall clock time and date at job start Mon Mar 30 2020 01:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28425 * 125.06832 * 2 1 4 4 C 1.31647 * 110.82263 * 179.97438 * 3 2 1 5 5 C 1.48455 * 126.20708 * 180.02562 * 4 3 2 6 6 C 1.39735 * 120.53050 * 359.96247 * 5 4 3 7 7 C 1.38422 * 118.31611 * 179.97438 * 6 5 4 8 8 C 1.38308 * 119.27668 * 0.02562 * 7 6 5 9 9 N 1.31883 * 121.02268 * 0.02562 * 8 7 6 10 10 C 1.31756 * 121.85032 * 359.72603 * 9 8 7 11 11 C 1.40653 * 107.58997 * 0.02562 * 4 3 2 12 12 C 1.36719 * 125.07110 * 180.32083 * 2 1 3 13 13 C 1.47053 * 126.78205 * 0.03718 * 12 2 1 14 14 O 1.21678 * 120.00069 * 5.82699 * 13 12 2 15 15 N 1.34772 * 119.99958 * 185.82601 * 13 12 2 16 16 C 1.36842 * 120.00229 * 185.19148 * 15 13 12 17 17 H 1.08008 * 119.99610 * 359.97438 * 16 15 13 18 18 C 1.39047 * 120.00344 * 180.02562 * 16 15 13 19 19 N 1.31363 * 119.99929 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00003 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47183 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47116 * 120.00185 * 20 18 16 23 23 H 1.48500 * 109.46691 * 239.99906 * 20 18 16 24 24 H 1.09000 * 109.47275 * 86.00867 * 1 2 3 25 25 H 1.09003 * 109.47124 * 206.00885 * 1 2 3 26 26 H 1.09002 * 109.47297 * 326.00555 * 1 2 3 27 27 H 1.08007 * 120.84139 * 0.02562 * 6 5 4 28 28 H 1.07999 * 120.36203 * 180.02562 * 7 6 5 29 29 H 1.08003 * 119.48993 * 179.97438 * 8 7 6 30 30 H 1.07996 * 119.69845 * 180.29219 * 10 9 8 31 31 H 1.08007 * 127.35123 * 180.02562 * 11 4 3 32 32 H 0.97000 * 119.99959 * 5.19563 * 15 13 12 33 33 H 0.96997 * 119.99894 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2028 1.0511 0.0000 4 6 3.4788 0.7272 0.0006 5 6 4.6235 1.6724 0.0013 6 6 4.4045 3.0525 0.0006 7 6 5.5052 3.8919 0.0019 8 6 6.7746 3.3429 0.0032 9 7 6.9497 2.0357 0.0027 10 6 5.9328 1.1979 0.0064 11 6 3.5608 -0.6770 0.0003 12 6 2.2505 -1.1189 -0.0063 13 6 1.7925 -2.5163 -0.0149 14 8 0.6069 -2.7673 -0.1240 15 7 2.6859 -3.5190 0.0981 16 6 2.2738 -4.8188 -0.0163 17 1 1.2324 -5.0412 -0.1967 18 6 3.1955 -5.8533 0.1008 19 7 4.4619 -5.5829 0.3217 20 14 2.6329 -7.6277 -0.0561 21 1 1.1687 -7.6630 -0.3011 22 1 3.3409 -8.2730 -1.1909 23 1 2.9420 -8.3578 1.1996 24 1 -0.3634 0.0715 -1.0252 25 1 -0.3633 -0.9236 0.4507 26 1 -0.3634 0.8520 0.5746 27 1 3.4019 3.4540 0.0000 28 1 5.3741 4.9639 0.0018 29 1 7.6358 3.9946 0.0037 30 1 6.1164 0.1337 0.0107 31 1 4.4562 -1.2811 0.0010 32 1 3.6212 -3.3192 0.2606 33 1 5.1047 -6.3046 0.4038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292649449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:23 Heat of formation + Delta-G solvation = 52.731731 kcal Electronic energy + Delta-G solvation = -19525.881173 eV Core-core repulsion = 16359.350726 eV Total energy + Delta-G solvation = -3166.530446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.51317 -40.85584 -39.90211 -36.25520 -35.07317 -33.66641 -33.12446 -31.97021 -31.75869 -27.88527 -27.22294 -24.88107 -24.47855 -23.52783 -22.01433 -20.68029 -19.95937 -18.58905 -17.81096 -17.38175 -17.29585 -16.87019 -16.52473 -16.18381 -15.67536 -15.29593 -14.90403 -14.85455 -14.74410 -14.37320 -13.97063 -13.74277 -13.61847 -13.29444 -12.97191 -12.78795 -12.48560 -12.10795 -11.90441 -11.64141 -11.30573 -10.66585 -10.48981 -10.44740 -10.22355 -10.08475 -9.30399 -8.58072 -6.03776 -0.13401 0.30626 0.33912 1.39928 1.42087 1.47006 1.59329 1.69772 2.25676 2.29678 2.90549 2.99593 3.19431 3.26669 3.58015 3.71350 4.00488 4.05779 4.09212 4.19777 4.30865 4.32964 4.45954 4.62782 4.70568 4.74822 4.86497 5.15445 5.30035 5.33306 5.39767 5.68559 5.78914 5.84324 6.40867 6.91513 6.98439 7.02689 7.34609 7.86778 8.58848 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.004503 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.955221 B = 6216.144839 C = 7461.625513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.263 5.263 3 N -0.279 5.279 4 C 0.056 3.944 5 C -0.063 4.063 6 C -0.063 4.063 7 C -0.160 4.160 8 C 0.091 3.909 9 N -0.504 5.504 10 C 0.106 3.894 11 C -0.194 4.194 12 C -0.016 4.016 13 C 0.492 3.508 14 O -0.625 6.625 15 N -0.533 5.533 16 C -0.335 4.335 17 H 0.091 0.909 18 C -0.005 4.005 19 N -0.905 5.905 20 Si 1.000 3.000 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.269 1.269 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.174 0.826 29 H 0.189 0.811 30 H 0.161 0.839 31 H 0.171 0.829 32 H 0.400 0.600 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 15.810 -0.067 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.050 5.050 3 N -0.113 5.113 4 C -0.099 4.099 5 C -0.067 4.067 6 C -0.090 4.090 7 C -0.179 4.179 8 C -0.066 4.066 9 N -0.213 5.213 10 C -0.052 4.052 11 C -0.223 4.223 12 C -0.144 4.144 13 C 0.279 3.721 14 O -0.515 6.515 15 N -0.167 5.167 16 C -0.465 4.465 17 H 0.109 0.891 18 C -0.207 4.207 19 N -0.543 5.543 20 Si 0.823 3.177 21 H -0.193 1.193 22 H -0.194 1.194 23 H -0.194 1.194 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.136 0.864 27 H 0.163 0.837 28 H 0.191 0.809 29 H 0.205 0.795 30 H 0.178 0.822 31 H 0.189 0.811 32 H 0.235 0.765 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.583 16.060 -0.125 16.138 hybrid contribution -0.238 -1.354 0.006 1.375 sum 1.345 14.705 -0.119 14.767 Atomic orbital electron populations 1.22484 0.71093 1.06295 1.05488 1.45721 1.08666 1.01155 1.49467 1.73153 1.03302 1.13358 1.21445 1.20274 0.90398 0.91917 1.07355 1.18804 0.91196 0.92949 1.03775 1.21863 1.01199 0.91571 0.94412 1.22447 0.92278 1.02737 1.00443 1.23452 0.98342 0.91016 0.93818 1.67750 1.34855 1.05615 1.13031 1.22888 0.86858 1.00595 0.94899 1.22352 0.96028 0.94631 1.09247 1.21517 0.91653 0.89835 1.11379 1.16831 0.86054 0.83299 0.85893 1.90563 1.17003 1.84689 1.59221 1.41612 1.10185 1.05149 1.59762 1.19853 0.96295 0.81694 1.48645 0.89112 1.26211 0.94741 1.04522 0.95244 1.69652 1.02476 1.35887 1.46322 0.84764 0.78563 0.75891 0.78495 1.19290 1.19356 1.19423 0.88923 0.88471 0.86425 0.83721 0.80870 0.79451 0.82204 0.81140 0.76497 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.50 10.86 127.77 1.39 3.89 16 2 N -0.26 -9.57 3.75 -356.15 -1.34 -10.90 16 3 N -0.28 -9.56 11.65 -48.24 -0.56 -10.12 16 4 C 0.06 1.87 7.00 42.49 0.30 2.17 16 5 C -0.06 -1.79 5.89 -19.95 -0.12 -1.90 16 6 C -0.06 -1.43 9.82 22.68 0.22 -1.21 16 7 C -0.16 -2.66 10.10 22.33 0.23 -2.44 16 8 C 0.09 1.69 11.17 84.70 0.95 2.64 16 9 N -0.50 -12.93 10.35 -194.99 -2.02 -14.95 16 10 C 0.11 2.90 10.75 84.95 0.91 3.81 16 11 C -0.19 -7.11 9.85 22.87 0.23 -6.88 16 12 C -0.02 -0.66 6.94 40.71 0.28 -0.37 16 13 C 0.49 24.21 7.73 86.56 0.67 24.88 16 14 O -0.63 -33.43 14.25 -4.28 -0.06 -33.49 16 15 N -0.53 -27.35 5.25 -310.31 -1.63 -28.98 16 16 C -0.34 -18.33 9.67 84.11 0.81 -17.52 16 17 H 0.09 5.21 7.16 -2.91 -0.02 5.19 16 18 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 19 N -0.90 -46.77 13.05 21.68 0.28 -46.49 16 20 Si 1.00 40.63 29.55 68.60 2.03 42.66 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.10 3.28 6.21 -2.39 -0.01 3.27 16 26 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.14 3.02 7.94 -2.91 -0.02 2.99 16 28 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 29 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.16 4.19 7.13 -2.91 -0.02 4.17 16 31 H 0.17 5.71 7.02 -2.91 -0.02 5.69 16 32 H 0.40 19.62 6.96 -92.71 -0.65 18.98 16 33 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -66.62 297.60 3.56 -63.06 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.52 Total: 31.91 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.33 Total: 7.30 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -5.26 Total: -111.44 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.06 Total: -33.49 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -66.62 3.56 -63.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292649449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.792 kcal (2) G-P(sol) polarization free energy of solvation -66.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds