Wall clock time and date at job start Mon Mar 30 2020 01:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34389 * 126.76490 * 2 1 4 4 N 1.30852 * 108.21216 * 180.02562 * 3 2 1 5 5 C 1.33654 * 109.77498 * 359.97438 * 4 3 2 6 6 N 1.39747 * 125.60399 * 179.97438 * 5 4 3 7 7 C 1.34770 * 119.99825 * 0.02764 * 6 5 4 8 8 O 1.21627 * 120.00370 * 359.97438 * 7 6 5 9 9 C 1.47389 * 119.99859 * 179.97438 * 7 6 5 10 10 C 1.39246 * 120.28562 * 355.33873 * 9 7 6 11 11 C 1.38199 * 120.09363 * 179.97438 * 10 9 7 12 12 C 1.38836 * 120.67646 * 0.04099 * 11 10 9 13 13 C 1.37593 * 120.57859 * 359.97438 * 12 11 10 14 14 C 1.40704 * 119.87940 * 359.71514 * 13 12 11 15 15 C 1.40875 * 120.33202 * 180.30303 * 14 13 12 16 16 H 1.07999 * 120.00318 * 215.81625 * 15 14 13 17 17 C 1.40278 * 119.99647 * 35.81164 * 15 14 13 18 18 N 1.30635 * 120.00182 * 8.98667 * 17 15 14 19 19 Si 1.86799 * 120.00103 * 188.98169 * 17 15 14 20 20 H 1.48498 * 109.46945 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46830 * 120.00249 * 19 17 15 22 22 H 1.48495 * 109.47424 * 240.00177 * 19 17 15 23 23 N 1.31195 * 108.78906 * 0.02562 * 5 4 3 24 24 H 1.08993 * 109.46849 * 90.00015 * 1 2 3 25 25 H 1.09000 * 109.46828 * 210.00199 * 1 2 3 26 26 H 1.09001 * 109.46953 * 330.00238 * 1 2 3 27 27 H 1.08003 * 125.89193 * 0.02562 * 3 2 1 28 28 H 0.96993 * 119.99630 * 180.02562 * 6 5 4 29 29 H 1.08011 * 119.95265 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.66211 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.71549 * 179.97438 * 12 11 10 32 32 H 1.08005 * 120.05638 * 180.02562 * 13 12 11 33 33 H 0.97000 * 120.00397 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2694 1.0766 0.0000 4 7 3.5099 0.6602 -0.0006 5 6 3.5384 -0.6760 -0.0004 6 7 4.6917 -1.4651 -0.0013 7 6 5.9069 -0.8824 -0.0020 8 8 5.9999 0.3303 -0.0023 9 6 7.1233 -1.7147 -0.0025 10 6 7.0261 -3.1003 0.0955 11 6 8.1693 -3.8769 0.0942 12 6 9.4239 -3.2905 -0.0034 13 6 9.5522 -1.9241 -0.1012 14 6 8.4039 -1.1110 -0.1087 15 6 8.5238 0.2886 -0.2149 16 1 7.8392 0.9313 0.3185 17 6 9.5327 0.8474 -1.0135 18 7 10.2473 0.0816 -1.7941 19 14 9.8544 2.6868 -0.9607 20 1 8.9165 3.3260 -0.0031 21 1 11.2520 2.9324 -0.5229 22 1 9.6508 3.2640 -2.3136 23 7 2.3056 -1.1249 -0.0002 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9474 2.1075 0.0004 28 1 4.6175 -2.4322 -0.0015 29 1 6.0560 -3.5688 0.1727 30 1 8.0858 -4.9510 0.1701 31 1 10.3070 -3.9123 -0.0026 32 1 10.5323 -1.4768 -0.1772 33 1 10.9451 0.4679 -2.3461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298657947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:29 Heat of formation + Delta-G solvation = 76.353828 kcal Electronic energy + Delta-G solvation = -19907.792973 eV Core-core repulsion = 16742.286858 eV Total energy + Delta-G solvation = -3165.506116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.04353 -40.71440 -38.62976 -36.17443 -35.47298 -34.21327 -32.15597 -31.76043 -31.17964 -27.87999 -27.23721 -24.75444 -23.22371 -23.03185 -22.12590 -20.86441 -19.50027 -18.51860 -17.97191 -17.11229 -17.07941 -16.80208 -16.04695 -15.81211 -15.60177 -15.32110 -14.95414 -14.50326 -14.10195 -14.03682 -13.87186 -13.45425 -12.91040 -12.85958 -12.64648 -12.46721 -12.32602 -11.92863 -11.79981 -11.50871 -11.14401 -10.96599 -10.82239 -10.21031 -9.63825 -9.39436 -9.22818 -8.68895 -6.38807 0.34866 0.72544 1.00985 1.23104 1.35106 1.48690 1.51755 1.87012 2.17718 2.23541 2.49528 2.80847 3.48178 3.69899 3.82434 4.19162 4.32574 4.48411 4.52164 4.59878 4.65188 4.76072 4.87611 5.08446 5.23657 5.29427 5.31943 5.58842 5.68957 5.79473 5.93614 6.06819 6.10733 6.31442 6.37968 6.71283 6.86557 6.95858 7.28008 7.54891 8.29272 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.005834 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.639346 B = 4798.639241 C = 6208.353874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.381 5.381 3 C 0.272 3.728 4 N -0.579 5.579 5 C 0.436 3.564 6 N -0.631 5.631 7 C 0.558 3.442 8 O -0.516 6.516 9 C -0.277 4.277 10 C -0.056 4.056 11 C -0.231 4.231 12 C -0.089 4.089 13 C -0.171 4.171 14 C 0.120 3.880 15 C -0.461 4.461 16 H 0.086 0.914 17 C 0.034 3.966 18 N -0.820 5.820 19 Si 0.979 3.021 20 H -0.270 1.270 21 H -0.253 1.253 22 H -0.267 1.267 23 N -0.368 5.368 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.270 0.730 28 H 0.425 0.575 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.062 -0.768 2.176 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.173 5.173 3 C -0.024 4.024 4 N -0.311 5.311 5 C 0.067 3.933 6 N -0.287 5.287 7 C 0.351 3.649 8 O -0.389 6.389 9 C -0.282 4.282 10 C -0.074 4.074 11 C -0.250 4.250 12 C -0.108 4.108 13 C -0.191 4.191 14 C 0.116 3.884 15 C -0.489 4.489 16 H 0.104 0.896 17 C -0.181 4.181 18 N -0.446 5.446 19 Si 0.800 3.200 20 H -0.194 1.194 21 H -0.177 1.177 22 H -0.192 1.192 23 N -0.207 5.207 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.149 0.851 27 H 0.286 0.714 28 H 0.265 0.735 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.729 -0.435 1.998 14.870 hybrid contribution 0.148 0.409 -0.238 0.496 sum -14.581 -0.026 1.761 14.686 Atomic orbital electron populations 1.22376 0.70358 1.06765 1.05253 1.50467 1.09198 1.02608 1.55055 1.26996 0.83802 0.97415 0.94185 1.70617 1.22956 1.09980 1.27516 1.20670 0.86943 0.88051 0.97636 1.42738 1.01322 1.09824 1.74823 1.18694 0.82466 0.87963 0.75779 1.90746 1.85494 1.15326 1.47379 1.19581 0.91355 0.93601 1.23710 1.21082 0.98845 0.91430 0.96054 1.20811 0.91811 0.99529 1.12807 1.21215 0.97953 0.94195 0.97401 1.21282 0.97677 0.93657 1.06437 1.17811 0.90342 0.93883 0.86355 1.20302 1.11447 0.93124 1.24064 0.89609 1.26801 0.93112 1.05172 0.93057 1.69736 1.16990 1.39583 1.18281 0.85207 0.79050 0.76673 0.79070 1.19430 1.17668 1.19166 1.78003 0.99008 1.08911 1.34749 0.88930 0.88975 0.85131 0.71435 0.73508 0.85169 0.84624 0.85823 0.88062 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.53 127.77 1.47 2.40 16 2 N -0.38 -9.11 4.03 -373.64 -1.51 -10.61 16 3 C 0.27 7.09 12.65 180.37 2.28 9.38 16 4 N -0.58 -23.48 9.37 -201.18 -1.88 -25.37 16 5 C 0.44 17.65 8.80 260.84 2.30 19.95 16 6 N -0.63 -26.26 5.38 -315.89 -1.70 -27.96 16 7 C 0.56 28.26 7.69 86.65 0.67 28.92 16 8 O -0.52 -29.95 12.20 -4.12 -0.05 -30.00 16 9 C -0.28 -14.01 5.92 -19.70 -0.12 -14.13 16 10 C -0.06 -2.29 9.52 22.50 0.21 -2.07 16 11 C -0.23 -9.03 10.03 22.40 0.22 -8.81 16 12 C -0.09 -3.84 10.01 22.26 0.22 -3.62 16 13 C -0.17 -8.85 8.62 22.72 0.20 -8.65 16 14 C 0.12 6.72 5.48 -21.11 -0.12 6.60 16 15 C -0.46 -27.07 7.78 23.41 0.18 -26.89 16 16 H 0.09 5.37 5.73 -2.91 -0.02 5.36 16 17 C 0.03 1.83 5.25 85.37 0.45 2.28 16 18 N -0.82 -44.12 11.25 21.88 0.25 -43.87 16 19 Si 0.98 42.47 29.57 68.60 2.03 44.49 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 N -0.37 -12.40 12.72 -58.94 -0.75 -13.15 16 24 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.27 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.43 14.65 6.87 -92.71 -0.64 14.01 16 29 H 0.13 4.22 6.42 -2.90 -0.02 4.20 16 30 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.10 5.43 6.72 -2.91 -0.02 5.41 16 33 H 0.29 14.03 8.29 -92.71 -0.77 13.26 16 Total: -1.00 -80.96 291.76 4.89 -76.08 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.53 Total: 25.02 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 7.97 Total: 5.36 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -5.60 Total: -120.96 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.05 Total: -30.00 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -80.96 4.89 -76.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298657947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.430 kcal (2) G-P(sol) polarization free energy of solvation -80.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds