Wall clock time and date at job start Mon Mar 30 2020 01:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34882 * 126.11492 * 2 1 4 4 H 0.97001 * 125.81263 * 0.03606 * 3 2 1 5 5 N 1.39997 * 108.37151 * 180.02562 * 3 2 1 6 6 C 1.31284 * 108.46053 * 359.97438 * 5 3 2 7 7 N 1.39455 * 126.05398 * 179.97438 * 6 5 3 8 8 C 1.34777 * 120.00165 * 0.02562 * 7 6 5 9 9 O 1.21777 * 119.99590 * 359.73247 * 8 7 6 10 10 C 1.41815 * 120.00490 * 180.02562 * 8 7 6 11 11 H 1.08000 * 119.99265 * 359.72635 * 10 8 7 12 12 C 1.40132 * 120.00429 * 179.72924 * 10 8 7 13 13 N 1.30633 * 119.99829 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00362 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47109 * 89.99457 * 14 12 10 16 16 H 1.48498 * 109.47278 * 209.99886 * 14 12 10 17 17 H 1.48507 * 109.46754 * 329.99717 * 14 12 10 18 18 C 1.36342 * 126.11298 * 180.31178 * 2 1 3 19 19 C 1.48381 * 126.25302 * 359.97270 * 18 2 1 20 20 C 1.39772 * 120.53678 * 245.20653 * 19 18 2 21 21 C 1.38400 * 118.31154 * 179.97438 * 20 19 18 22 22 C 1.38324 * 119.28741 * 0.02562 * 21 20 19 23 23 N 1.31883 * 121.03273 * 359.97438 * 22 21 20 24 24 C 1.31758 * 121.85197 * 359.72613 * 23 22 21 25 25 H 1.08999 * 109.46597 * 89.97846 * 1 2 3 26 26 H 1.08998 * 109.47123 * 209.98292 * 1 2 3 27 27 H 1.09002 * 109.47123 * 329.98005 * 1 2 3 28 28 H 0.97004 * 120.00188 * 180.02562 * 7 6 5 29 29 H 0.96999 * 120.00029 * 180.02562 * 13 12 10 30 30 H 1.08003 * 120.84447 * 359.97438 * 20 19 18 31 31 H 1.08000 * 120.35932 * 180.02562 * 21 20 19 32 32 H 1.07996 * 119.48691 * 179.97438 * 22 21 20 33 33 H 1.07991 * 119.70388 * 180.26801 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3020 1.0896 0.0000 4 1 2.0011 2.0118 0.0005 5 7 3.6354 0.6630 -0.0006 6 6 3.6518 -0.6498 -0.0004 7 7 4.7894 -1.4563 -0.0013 8 6 6.0143 -0.8940 -0.0021 9 8 6.1275 0.3185 -0.0068 10 6 7.1712 -1.7141 -0.0036 11 1 7.0707 -2.7895 0.0003 12 6 8.4447 -1.1294 -0.0101 13 7 8.5662 0.1712 -0.0152 14 14 9.9686 -2.2098 -0.0128 15 1 10.3670 -2.5002 -1.4135 16 1 11.0763 -1.5050 0.6810 17 1 9.6737 -3.4832 0.6921 18 6 2.3106 -1.1014 -0.0060 19 6 1.8611 -2.5155 -0.0131 20 6 2.1275 -3.3509 1.0754 21 6 1.6866 -4.6616 1.0202 22 6 1.0032 -5.0991 -0.1000 23 7 0.7666 -4.2874 -1.1122 24 6 1.1616 -3.0304 -1.1025 25 1 -0.3632 0.0004 -1.0277 26 1 -0.3633 -0.8901 0.5136 27 1 -0.3633 0.8898 0.5141 28 1 4.6992 -2.4222 -0.0015 29 1 9.4477 0.5760 -0.0201 30 1 2.6638 -2.9828 1.9376 31 1 1.8740 -5.3356 1.8430 32 1 0.6581 -6.1213 -0.1467 33 1 0.9453 -2.3950 -1.9485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001303455763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:57 Heat of formation + Delta-G solvation = 44.932334 kcal Electronic energy + Delta-G solvation = -19972.111640 eV Core-core repulsion = 16805.242987 eV Total energy + Delta-G solvation = -3166.868654 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27714 -40.60980 -39.45431 -35.57222 -34.55313 -34.08835 -32.93690 -32.23938 -30.30058 -28.64339 -27.74791 -24.34784 -24.17366 -23.67519 -21.01444 -20.71396 -19.44084 -18.12439 -17.78622 -17.37158 -17.04833 -16.71630 -16.01278 -15.93506 -15.81962 -14.82552 -14.70848 -14.51388 -14.43995 -13.92291 -13.89968 -13.53971 -13.30955 -13.06293 -12.80961 -12.71380 -12.58561 -12.02204 -11.57782 -11.41899 -10.93271 -10.72906 -10.44771 -10.00886 -9.82853 -9.38817 -8.91192 -8.38036 -7.02318 0.18401 0.40867 1.04391 1.38776 1.38894 1.56729 1.78889 1.93822 2.23370 2.51852 2.90504 2.97724 3.61962 3.69153 3.81725 4.03577 4.11625 4.11703 4.24095 4.32114 4.51497 4.70349 4.75834 4.94771 5.00647 5.11642 5.20495 5.21857 5.32648 5.47849 5.80128 5.87520 6.00912 6.33378 6.58440 6.73521 6.82536 7.10900 7.49713 8.41187 8.58967 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.005630 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.243912 B = 4972.096989 C = 6209.509721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.132 3.868 3 N -0.473 5.473 4 H 0.448 0.552 5 N -0.346 5.346 6 C 0.316 3.684 7 N -0.657 5.657 8 C 0.522 3.478 9 O -0.589 6.589 10 C -0.565 4.565 11 H 0.091 0.909 12 C 0.031 3.969 13 N -0.805 5.805 14 Si 1.004 2.996 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.245 1.245 18 C -0.256 4.256 19 C -0.045 4.045 20 C -0.080 4.080 21 C -0.158 4.158 22 C 0.085 3.915 23 N -0.502 5.502 24 C 0.101 3.899 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.409 0.591 29 H 0.279 0.721 30 H 0.127 0.873 31 H 0.164 0.836 32 H 0.184 0.816 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.698 -8.855 1.899 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.000 4.000 3 N -0.182 5.182 4 H 0.295 0.705 5 N -0.178 5.178 6 C 0.058 3.942 7 N -0.308 5.308 8 C 0.330 3.670 9 O -0.472 6.472 10 C -0.600 4.600 11 H 0.109 0.891 12 C -0.187 4.187 13 N -0.434 5.434 14 Si 0.822 3.178 15 H -0.185 1.185 16 H -0.195 1.195 17 H -0.168 1.168 18 C -0.270 4.270 19 C -0.048 4.048 20 C -0.107 4.107 21 C -0.178 4.178 22 C -0.071 4.071 23 N -0.211 5.211 24 C -0.056 4.056 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.244 0.756 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.182 0.818 32 H 0.201 0.799 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.154 -7.120 1.169 17.692 hybrid contribution 0.874 -0.183 0.724 1.149 sum -15.280 -7.302 1.893 17.041 Atomic orbital electron populations 1.20631 0.83326 1.05243 1.05114 1.21616 0.95921 0.85717 0.96708 1.46136 1.03114 1.08825 1.60142 0.70541 1.78174 0.95672 1.11317 1.32588 1.19891 0.88064 0.89842 0.96404 1.43369 1.02847 1.08482 1.76065 1.17643 0.82590 0.88593 0.78176 1.90694 1.85294 1.16176 1.55045 1.20524 0.90589 0.95151 1.53743 0.89089 1.27065 1.04258 0.96453 0.90918 1.70191 1.25989 1.13297 1.33874 0.84930 0.74788 0.78441 0.79611 1.18478 1.19531 1.16806 1.18182 0.88962 0.93503 1.26391 1.18910 0.99099 0.91322 0.95471 1.21887 0.97075 0.94195 0.97504 1.22366 0.98794 0.95765 1.00846 1.23284 0.94840 1.00342 0.88681 1.67682 1.20131 1.04422 1.28836 1.22936 0.94391 0.91676 0.96558 0.87978 0.89257 0.88452 0.75570 0.91123 0.85540 0.81838 0.79920 0.82588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 10.22 71.24 0.73 -0.62 16 2 C 0.13 3.75 7.24 41.65 0.30 4.05 16 3 N -0.47 -16.01 7.32 -47.46 -0.35 -16.36 16 4 H 0.45 11.59 8.96 -213.39 -1.91 9.67 16 5 N -0.35 -17.06 10.89 -54.13 -0.59 -17.65 16 6 C 0.32 14.67 7.80 133.83 1.04 15.71 16 7 N -0.66 -32.72 5.41 -314.99 -1.70 -34.42 16 8 C 0.52 31.81 7.54 85.13 0.64 32.45 16 9 O -0.59 -41.22 13.59 -4.59 -0.06 -41.29 16 10 C -0.56 -32.39 9.31 23.62 0.22 -32.17 16 11 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 12 C 0.03 1.71 5.50 85.33 0.47 2.18 16 13 N -0.80 -49.65 11.73 21.85 0.26 -49.39 16 14 Si 1.00 40.55 29.56 68.60 2.03 42.58 16 15 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 16 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 18 C -0.26 -8.80 5.55 -20.21 -0.11 -8.91 16 19 C -0.04 -1.28 5.10 -19.94 -0.10 -1.38 16 20 C -0.08 -2.05 9.93 22.68 0.23 -1.82 16 21 C -0.16 -3.08 10.10 22.33 0.23 -2.85 16 22 C 0.09 1.69 11.17 84.71 0.95 2.64 16 23 N -0.50 -12.61 10.35 -194.93 -2.02 -14.63 16 24 C 0.10 2.66 10.95 84.97 0.93 3.59 16 25 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.36 7.91 -2.39 -0.02 1.34 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.41 17.59 8.58 -92.71 -0.80 16.79 16 29 H 0.28 15.44 8.29 -92.71 -0.77 14.67 16 30 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.16 3.77 8.06 -2.92 -0.02 3.75 16 Total: -1.00 -86.51 300.69 1.55 -84.96 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -1.53 Total: 33.35 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 5.52 Total: 12.86 kcal Atomic # 7 Polarization: -128.05 SS G_CDS: -4.40 Total: -132.46 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.06 Total: -41.29 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -86.51 1.55 -84.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303455763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.892 kcal (2) G-P(sol) polarization free energy of solvation -86.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds