Wall clock time and date at job start Mon Mar 30 2020 00:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99693 * 2 1 4 4 H 1.48509 * 109.47057 * 239.99655 * 3 2 1 5 5 H 1.48507 * 109.47611 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47446 * 119.99598 * 3 2 1 7 7 C 1.37873 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99668 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00395 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.01056 * 48.36526 * 9 7 2 11 11 C 1.53937 * 113.73227 * 179.97438 * 9 7 2 12 12 N 1.47955 * 86.18157 * 138.07796 * 11 9 7 13 13 C 1.46896 * 111.00525 * 222.41550 * 12 11 9 14 14 C 1.50703 * 109.47363 * 169.99959 * 13 12 11 15 15 C 1.34847 * 125.88767 * 94.69330 * 14 13 12 16 16 C 1.40896 * 107.41201 * 179.88509 * 15 14 13 17 17 C 1.34851 * 107.41803 * 0.37757 * 16 15 14 18 18 N 1.36336 * 108.21765 * 359.77170 * 17 16 15 19 19 C 1.46497 * 125.63446 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.47476 * 29.96991 * 19 18 17 21 21 F 1.39905 * 109.47723 * 149.97333 * 19 18 17 22 22 C 1.47961 * 90.76430 * 335.31007 * 12 11 9 23 23 H 0.96994 * 120.00600 * 0.02562 * 1 2 3 24 24 H 0.96704 * 113.99705 * 311.63591 * 10 9 7 25 25 H 1.09005 * 113.75745 * 252.39518 * 11 9 7 26 26 H 1.08996 * 113.76539 * 23.76205 * 11 9 7 27 27 H 1.08998 * 109.47190 * 290.00447 * 13 12 11 28 28 H 1.09002 * 109.47036 * 50.00132 * 13 12 11 29 29 H 1.07996 * 126.29769 * 0.02562 * 15 14 13 30 30 H 1.08005 * 126.28944 * 180.13056 * 16 15 14 31 31 H 1.08000 * 125.88706 * 179.80972 * 17 16 15 32 32 H 1.09001 * 109.47120 * 269.96805 * 19 18 17 33 33 H 1.09002 * 113.75838 * 270.37219 * 22 12 11 34 34 H 1.09002 * 113.86277 * 139.01376 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.2154 -2.5462 -0.9829 11 6 2.1618 -3.7402 0.0005 12 7 1.2179 -4.3106 0.9869 13 6 1.9374 -4.9921 2.0712 14 6 0.9707 -5.3430 3.1727 15 6 0.3372 -6.5240 3.3220 16 6 -0.4663 -6.4286 4.4754 17 6 -0.2996 -5.1901 4.9823 18 7 0.5813 -4.5192 4.1869 19 6 1.0350 -3.1410 4.3890 20 9 1.0247 -2.8422 5.7557 21 9 2.3346 -2.9998 3.8906 22 6 0.7984 -2.9532 1.4000 23 1 -0.4851 0.8399 -0.0004 24 1 -0.3590 -1.7683 -0.9866 25 1 2.1783 -4.2728 -0.9504 26 1 3.1577 -3.5543 0.4025 27 1 2.3962 -5.9030 1.6865 28 1 2.7118 -4.3331 2.4637 29 1 0.4304 -7.3855 2.6774 30 1 -1.1023 -7.2036 4.8774 31 1 -0.7804 -4.7978 5.8661 32 1 0.3680 -2.4580 3.8627 33 1 1.3956 -2.5369 2.2113 34 1 -0.2741 -2.8551 1.5679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308708169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:57 Heat of formation + Delta-G solvation = -63.332550 kcal Electronic energy + Delta-G solvation = -22015.688129 eV Core-core repulsion = 18393.435571 eV Total energy + Delta-G solvation = -3622.252558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.56802 -48.67293 -42.22059 -40.56853 -36.29687 -34.12273 -33.26458 -32.25189 -29.03710 -27.32594 -26.88469 -26.53195 -23.85435 -21.73603 -21.12389 -20.66017 -19.50657 -19.06629 -18.64548 -18.28195 -17.11515 -16.87405 -16.20660 -15.99864 -15.82625 -15.48637 -15.23248 -15.03389 -14.93537 -14.51295 -14.14867 -13.87820 -13.60332 -13.35953 -13.27073 -13.16122 -13.06502 -12.74439 -12.48831 -12.29229 -12.19992 -11.97120 -11.24593 -10.66540 -10.15128 -9.91755 -9.60521 -9.05903 -8.26036 -6.44273 0.98750 1.20395 1.41603 1.43704 1.51107 2.02283 2.35844 2.47740 2.94403 3.00838 3.17932 3.39545 3.58168 3.94349 4.06031 4.19520 4.33095 4.37054 4.46414 4.57508 4.66692 4.70342 4.85868 5.05878 5.19523 5.33293 5.37524 5.43144 5.73144 5.95913 5.97274 5.99873 6.16322 6.24845 6.60853 7.28881 7.52887 8.78083 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.006805 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.868668 B = 4113.830220 C = 4777.088442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.031 3.969 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.064 0.936 9 C 0.220 3.780 10 O -0.585 6.585 11 C 0.016 3.984 12 N -0.474 5.474 13 C 0.073 3.927 14 C 0.020 3.980 15 C -0.181 4.181 16 C -0.190 4.190 17 C -0.012 4.012 18 N -0.506 5.506 19 C 0.479 3.521 20 F -0.180 7.180 21 F -0.184 7.184 22 C -0.014 4.014 23 H 0.275 0.725 24 H 0.383 0.617 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.054 0.946 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.192 0.808 32 H 0.154 0.846 33 H 0.070 0.930 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 -7.019 10.141 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.169 4.169 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.598 4.598 8 H 0.082 0.918 9 C 0.179 3.821 10 O -0.396 6.396 11 C -0.113 4.113 12 N -0.196 5.196 13 C -0.055 4.055 14 C -0.088 4.088 15 C -0.206 4.206 16 C -0.214 4.214 17 C -0.137 4.137 18 N -0.195 5.195 19 C 0.344 3.656 20 F -0.162 7.162 21 F -0.165 7.165 22 C -0.143 4.143 23 H 0.084 0.916 24 H 0.237 0.763 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.072 0.928 29 H 0.169 0.831 30 H 0.185 0.815 31 H 0.209 0.791 32 H 0.171 0.829 33 H 0.088 0.912 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.605 -7.596 9.884 12.480 hybrid contribution 0.781 2.028 0.458 2.221 sum 1.386 -5.567 10.341 11.826 Atomic orbital electron populations 1.69410 1.07060 1.28733 1.50621 1.25748 0.95758 1.02475 0.92942 0.85546 0.78446 0.78394 0.78902 1.19821 1.20477 1.19481 1.21871 0.93842 0.91742 1.52306 0.91788 1.20064 0.85461 0.91875 0.84664 1.86035 1.46650 1.48310 1.58601 1.24112 0.95261 0.95089 0.96812 1.68615 1.26695 1.15066 1.09273 1.21395 0.93267 1.01213 0.89654 1.20309 1.04392 0.91439 0.92611 1.21050 1.01425 0.97334 1.00765 1.21282 1.04733 0.97240 0.98182 1.22284 0.98264 0.93632 0.99555 1.45321 1.38141 1.11391 1.24680 1.21734 0.81383 0.85295 0.77169 1.93078 1.96598 1.92716 1.33787 1.93004 1.41291 1.95350 1.86871 1.24716 0.98976 0.89201 1.01409 0.91557 0.76328 0.90221 0.90328 0.87511 0.92798 0.83102 0.81506 0.79096 0.82933 0.91246 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.01 11.08 21.45 0.24 -47.77 16 2 C 0.03 1.57 5.39 84.65 0.46 2.03 16 3 Si 0.96 40.56 29.54 68.60 2.03 42.59 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.56 -29.20 8.62 25.60 0.22 -28.98 16 8 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.22 11.01 1.44 -10.89 -0.02 10.99 16 10 O -0.58 -31.86 13.49 -148.98 -2.01 -33.87 16 11 C 0.02 0.67 7.36 86.41 0.64 1.31 16 12 N -0.47 -19.43 6.25 -915.49 -5.72 -25.15 16 13 C 0.07 2.49 4.98 85.56 0.43 2.92 16 14 C 0.02 0.66 5.90 41.08 0.24 0.90 16 15 C -0.18 -5.23 10.77 22.14 0.24 -4.99 16 16 C -0.19 -4.74 10.86 22.14 0.24 -4.49 16 17 C -0.01 -0.30 10.98 83.21 0.91 0.61 16 18 N -0.51 -15.28 3.13 -528.10 -1.65 -16.93 16 19 C 0.48 14.19 5.00 127.77 0.64 14.83 16 20 F -0.18 -4.86 17.00 44.97 0.76 -4.09 16 21 F -0.18 -6.13 12.75 44.97 0.57 -5.56 16 22 C -0.01 -0.61 5.58 86.41 0.48 -0.13 16 23 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 24 H 0.38 21.30 6.42 -74.05 -0.48 20.83 16 25 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 26 H 0.08 3.11 7.74 -2.39 -0.02 3.09 16 27 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 28 H 0.05 1.88 5.42 -2.39 -0.01 1.87 16 29 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.15 4.48 6.91 -2.39 -0.02 4.46 16 33 H 0.07 2.97 3.98 -2.39 -0.01 2.96 16 34 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -58.36 286.65 -0.64 -59.00 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.67 Total: 36.79 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.48 Total: -5.00 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -7.14 Total: -89.85 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -2.01 Total: -33.87 kcal Atomic # 9 Polarization: -10.99 SS G_CDS: 1.34 Total: -9.65 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -58.36 -0.64 -59.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308708169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.330 kcal (2) G-P(sol) polarization free energy of solvation -58.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds