Wall clock time and date at job start Mon Mar 30 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00250 * 2 1 4 4 C 1.50707 * 109.47114 * 270.00333 * 3 2 1 5 5 H 1.07993 * 119.99765 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99928 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00095 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00093 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47228 * 59.99698 * 8 6 4 10 10 H 1.48500 * 109.47116 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46816 * 300.00023 * 8 6 4 12 12 C 1.34785 * 119.99562 * 180.02562 * 2 1 3 13 13 O 1.21556 * 119.99642 * 184.82667 * 12 2 1 14 14 C 1.47840 * 120.00083 * 4.82576 * 12 2 1 15 15 C 1.40601 * 120.27577 * 141.26472 * 14 12 2 16 16 N 1.30819 * 121.51896 * 179.97438 * 15 14 12 17 17 C 1.33754 * 121.79421 * 0.05161 * 16 15 14 18 18 N 1.33896 * 120.61430 * 179.97438 * 17 16 15 19 19 C 1.31328 * 119.84879 * 180.02562 * 18 17 16 20 20 C 1.39755 * 120.77384 * 359.95491 * 19 18 17 21 21 N 1.31310 * 120.56082 * 0.04163 * 20 19 18 22 22 C 1.33664 * 119.70481 * 359.97438 * 21 20 19 23 23 C 1.38903 * 120.27798 * 321.32423 * 14 12 2 24 24 H 1.09002 * 109.46612 * 265.14610 * 1 2 3 25 25 H 1.09001 * 109.47167 * 25.14096 * 1 2 3 26 26 H 1.09003 * 109.47612 * 145.14455 * 1 2 3 27 27 H 1.08998 * 109.47210 * 30.00040 * 3 2 1 28 28 H 1.08994 * 109.47123 * 150.00601 * 3 2 1 29 29 H 0.96994 * 120.00053 * 179.97438 * 7 6 4 30 30 H 1.07999 * 119.23996 * 0.02670 * 15 14 12 31 31 H 1.07996 * 119.61089 * 179.97438 * 19 18 17 32 32 H 1.07999 * 119.71912 * 180.02562 * 20 19 18 33 33 H 1.07999 * 120.99807 * 0.25666 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4367 3.4176 -3.4339 9 1 2.1388 3.5949 -4.1336 10 1 4.1793 4.7036 -3.4339 11 1 4.2394 2.3830 -4.1344 12 6 2.1388 -1.1673 -0.0005 13 8 3.3511 -1.1692 0.0881 14 6 1.4035 -2.4453 -0.1088 15 6 1.9250 -3.5003 -0.8782 16 7 1.2952 -4.6413 -0.9903 17 6 0.1250 -4.8632 -0.3816 18 7 -0.4996 -6.0402 -0.5130 19 6 -1.6483 -6.2416 0.0909 20 6 -2.2301 -5.2403 0.8732 21 7 -1.6377 -4.0774 1.0181 22 6 -0.4681 -3.8499 0.4124 23 6 0.1910 -2.6134 0.5477 24 1 -0.3632 -0.0870 1.0240 25 1 -0.3633 0.9303 -0.4366 26 1 -0.3634 -0.8433 -0.5873 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5137 29 1 4.0302 4.4439 -0.8504 30 1 2.8678 -3.3657 -1.3876 31 1 -2.1490 -7.1923 -0.0181 32 1 -3.1750 -5.4244 1.3626 33 1 -0.2352 -1.8181 1.1411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320276758.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:47 Heat of formation + Delta-G solvation = 40.041189 kcal Electronic energy + Delta-G solvation = -19839.837522 eV Core-core repulsion = 16672.756772 eV Total energy + Delta-G solvation = -3167.080750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.83984 -41.01305 -39.06145 -36.88080 -36.14989 -34.83746 -33.22778 -32.27511 -29.78558 -27.99115 -26.91795 -26.32730 -24.78590 -23.98735 -21.74455 -20.23231 -19.22860 -18.72932 -18.47588 -17.69526 -17.15632 -16.70841 -16.43607 -16.23847 -16.08724 -15.65834 -14.81158 -14.77670 -14.33688 -13.91722 -13.85001 -13.75537 -13.46836 -13.18477 -12.98814 -12.84171 -12.75279 -12.52008 -12.21832 -11.91702 -11.76638 -11.02579 -10.64951 -10.48354 -10.30107 -9.89200 -9.57238 -8.23926 -6.38640 -1.20494 -0.88564 0.59212 1.28283 1.38430 1.41941 1.49193 1.82106 2.13192 2.38174 2.43433 2.77161 2.86067 2.92178 3.06853 3.38047 3.43497 3.61405 3.80769 4.03101 4.19309 4.23499 4.35594 4.47623 4.63689 4.80068 4.84369 4.96491 5.20001 5.27970 5.47618 5.75098 5.82883 6.01882 6.32467 6.50870 6.69283 6.75165 7.11624 7.33440 8.83345 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034312 B = 0.004190 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.847228 B = 6681.613530 C = 6887.922720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.594 5.594 3 C 0.258 3.742 4 C -0.549 4.549 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.966 3.034 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.550 3.450 13 O -0.576 6.576 14 C -0.169 4.169 15 C 0.203 3.797 16 N -0.480 5.480 17 C 0.246 3.754 18 N -0.459 5.459 19 C 0.132 3.868 20 C 0.094 3.906 21 N -0.427 5.427 22 C 0.008 3.992 23 C 0.013 3.987 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.034 0.966 28 H 0.007 0.993 29 H 0.268 0.732 30 H 0.181 0.819 31 H 0.236 0.764 32 H 0.238 0.762 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.962 -17.201 3.428 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.323 5.323 3 C 0.137 3.863 4 C -0.587 4.587 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.565 5.565 8 Si 0.790 3.210 9 H -0.186 1.186 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.338 3.662 13 O -0.457 6.457 14 C -0.176 4.176 15 C 0.027 3.973 16 N -0.190 5.190 17 C 0.008 3.992 18 N -0.175 5.175 19 C -0.048 4.048 20 C -0.084 4.084 21 N -0.141 5.141 22 C -0.116 4.116 23 C -0.014 4.014 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.025 0.975 29 H 0.077 0.923 30 H 0.198 0.802 31 H 0.252 0.748 32 H 0.254 0.746 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.743 -17.544 2.970 23.758 hybrid contribution 0.453 1.311 -0.347 1.429 sum -15.290 -16.233 2.622 22.454 Atomic orbital electron populations 1.22301 0.78070 1.04161 1.02651 1.48080 1.08359 1.06185 1.69724 1.18920 0.91532 0.79418 0.96406 1.21663 1.37345 1.06796 0.92913 0.92707 1.25801 0.94763 0.96324 1.01839 1.70029 1.38616 1.14795 1.33039 0.85499 0.78815 0.77429 0.79276 1.18610 1.20327 1.20270 1.18284 0.86705 0.83853 0.77398 1.90757 1.15368 1.87551 1.52047 1.20985 0.97156 0.96192 1.03264 1.23229 0.97861 0.85113 0.91048 1.67547 1.07681 1.22225 1.21498 1.20362 0.92801 0.91638 0.94434 1.68392 1.09937 1.18773 1.20352 1.25334 0.88731 1.02511 0.88227 1.25219 1.01429 0.87437 0.94342 1.68681 1.05456 1.23124 1.16848 1.20106 0.95662 0.95878 0.99928 1.22354 0.90136 0.95759 0.93184 0.89653 0.90184 0.90482 0.94801 0.97461 0.92272 0.80225 0.74767 0.74618 0.80079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.06 8.87 127.77 1.13 3.19 16 2 N -0.59 -24.79 2.86 -854.56 -2.44 -27.23 16 3 C 0.26 13.53 5.18 85.64 0.44 13.97 16 4 C -0.55 -30.96 9.39 25.60 0.24 -30.72 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.70 5.46 84.65 0.46 1.16 16 7 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 8 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 C 0.55 23.25 7.37 86.78 0.64 23.89 16 13 O -0.58 -29.64 16.46 -3.89 -0.06 -29.71 16 14 C -0.17 -5.57 5.26 -20.00 -0.11 -5.67 16 15 C 0.20 6.62 10.76 85.42 0.92 7.54 16 16 N -0.48 -15.65 10.39 -192.74 -2.00 -17.65 16 17 C 0.25 7.09 7.60 134.96 1.03 8.11 16 18 N -0.46 -10.82 10.55 -193.10 -2.04 -12.86 16 19 C 0.13 1.46 11.21 85.14 0.95 2.42 16 20 C 0.09 0.92 11.22 85.14 0.96 1.87 16 21 N -0.43 -8.22 10.46 -187.98 -1.97 -10.18 16 22 C 0.01 0.21 6.59 40.35 0.27 0.48 16 23 C 0.01 0.35 7.66 23.05 0.18 0.52 16 24 H 0.09 1.94 6.88 -2.39 -0.02 1.92 16 25 H 0.08 2.40 8.04 -2.39 -0.02 2.38 16 26 H 0.08 1.99 5.83 -2.39 -0.01 1.98 16 27 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 28 H 0.01 0.44 7.36 -2.39 -0.02 0.42 16 29 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.18 5.65 8.04 -2.91 -0.02 5.63 16 31 H 0.24 -0.09 8.06 -2.91 -0.02 -0.11 16 32 H 0.24 -0.41 8.06 -2.91 -0.02 -0.43 16 33 H 0.18 4.09 5.29 -2.91 -0.02 4.07 16 Total: -1.00 -80.66 293.19 2.07 -78.60 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: 1.16 Total: 0.66 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: 7.11 Total: 26.76 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -8.16 Total: -122.55 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.06 Total: -29.71 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -80.66 2.07 -78.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320276758.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.637 kcal (2) G-P(sol) polarization free energy of solvation -80.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds