Wall clock time and date at job start Mon Mar 30 2020 01:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36890 * 119.99859 * 2 1 4 4 H 1.07999 * 119.99804 * 150.45031 * 3 2 1 5 5 C 1.39028 * 119.99891 * 330.44914 * 3 2 1 6 6 N 1.31375 * 119.99850 * 160.52381 * 5 3 2 7 7 Si 1.86802 * 120.00355 * 340.52018 * 5 3 2 8 8 H 1.48499 * 109.47018 * 91.49148 * 7 5 3 9 9 H 1.48496 * 109.47108 * 211.48992 * 7 5 3 10 10 H 1.48501 * 109.47038 * 331.49324 * 7 5 3 11 11 C 1.34776 * 119.99765 * 179.97438 * 2 1 3 12 12 O 1.21608 * 119.99642 * 184.57282 * 11 2 1 13 13 C 1.47587 * 120.00235 * 4.57571 * 11 2 1 14 14 C 1.41606 * 126.44277 * 177.08650 * 13 11 2 15 15 C 1.35306 * 105.55559 * 180.02562 * 14 13 11 16 16 N 1.35928 * 107.13101 * 359.97438 * 15 14 13 17 17 C 1.39893 * 124.96392 * 179.97438 * 16 15 14 18 18 C 1.39337 * 120.85650 * 359.71779 * 17 16 15 19 19 C 1.38011 * 119.08170 * 180.24659 * 18 17 16 20 20 N 1.31931 * 120.83108 * 0.03276 * 19 18 17 21 21 C 1.31931 * 121.89352 * 359.97438 * 20 19 18 22 22 C 1.38020 * 120.82940 * 359.97438 * 21 20 19 23 23 N 1.28480 * 110.08366 * 0.24604 * 16 15 14 24 24 H 1.08996 * 109.47524 * 235.45486 * 1 2 3 25 25 H 1.08997 * 109.46993 * 355.45680 * 1 2 3 26 26 H 1.09006 * 109.47032 * 115.45170 * 1 2 3 27 27 H 0.97000 * 120.00538 * 180.02562 * 6 5 3 28 28 H 1.07989 * 127.22524 * 359.97438 * 14 13 11 29 29 H 1.08006 * 126.43810 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.45809 * 0.25364 * 18 17 16 31 31 H 1.08002 * 119.57970 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.58873 * 180.02562 * 21 20 19 33 33 H 1.08001 * 120.45703 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 3.1241 1.2463 0.4613 5 6 1.5899 2.3112 -0.5938 6 7 2.0320 3.5078 -0.2799 7 14 0.2095 2.1223 -1.8382 8 1 -1.0991 2.1853 -1.1391 9 1 0.2903 3.2180 -2.8371 10 1 0.3401 0.8134 -2.5274 11 6 2.1389 -1.1672 0.0005 12 8 3.3520 -1.1688 0.0845 13 6 1.4045 -2.4434 -0.1009 14 6 1.9736 -3.7382 -0.1707 15 6 0.9263 -4.5909 -0.2531 16 7 -0.2054 -3.8383 -0.2323 17 6 -1.5072 -4.3461 -0.2989 18 6 -1.7352 -5.7169 -0.4010 19 6 -3.0344 -6.1775 -0.4695 20 7 -4.0519 -5.3382 -0.4400 21 6 -3.8771 -4.0340 -0.3442 22 6 -2.6091 -3.4939 -0.2700 23 7 0.0951 -2.5919 -0.1482 24 1 -0.3634 -0.5827 0.8464 25 1 -0.3633 1.0244 0.0814 26 1 -0.3633 -0.4417 -0.9280 27 1 1.6414 4.2933 -0.6938 28 1 3.0232 -3.9918 -0.1612 29 1 0.9795 -5.6674 -0.3223 30 1 -0.9068 -6.4093 -0.4261 31 1 -3.2204 -7.2385 -0.5483 32 1 -4.7369 -3.3809 -0.3228 33 1 -2.4730 -2.4254 -0.1914 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321181771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:29 Heat of formation + Delta-G solvation = 118.369039 kcal Electronic energy + Delta-G solvation = -20111.199750 eV Core-core repulsion = 16947.515551 eV Total energy + Delta-G solvation = -3163.684199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.76531 -40.22017 -38.40876 -34.92123 -34.37899 -32.18584 -31.84731 -30.55738 -30.18722 -26.49618 -25.89920 -24.20999 -23.91501 -21.84161 -21.12087 -19.15149 -18.48495 -17.10946 -16.42801 -16.22446 -16.12861 -16.04757 -15.59736 -15.06809 -14.36831 -14.07381 -13.90685 -13.66054 -13.55645 -13.14160 -12.56593 -12.44814 -12.22632 -12.05404 -11.88861 -10.80248 -10.75584 -10.57870 -10.21022 -9.95294 -9.90330 -9.59123 -9.30410 -9.13904 -8.79297 -8.58566 -7.86666 -6.48621 -3.97343 0.45599 0.74132 2.14861 2.30986 2.38701 3.02600 3.20309 3.23664 3.50080 4.06918 4.09994 4.13656 4.17075 4.34031 4.42496 4.71477 4.77510 4.91650 5.03226 5.11888 5.37016 5.42773 5.50574 5.71719 5.85308 5.91786 6.00530 6.20078 6.22100 6.39308 6.57933 6.89092 7.43784 7.59993 8.00068 8.16567 8.44905 8.85803 9.22880 9.69167 10.62282 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.005564 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.737231 B = 5031.125329 C = 6035.679355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.440 5.440 3 C -0.312 4.312 4 H 0.116 0.884 5 C 0.057 3.943 6 N -0.855 5.855 7 Si 0.886 3.114 8 H -0.273 1.273 9 H -0.288 1.288 10 H -0.264 1.264 11 C 0.523 3.477 12 O -0.562 6.562 13 C 0.041 3.959 14 C -0.169 4.169 15 C -0.023 4.023 16 N -0.260 5.260 17 C 0.201 3.799 18 C -0.194 4.194 19 C 0.124 3.876 20 N -0.495 5.495 21 C 0.124 3.876 22 C -0.172 4.172 23 N -0.274 5.274 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.277 0.723 28 H 0.167 0.833 29 H 0.181 0.819 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 -17.511 -1.022 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.159 5.159 3 C -0.440 4.440 4 H 0.134 0.866 5 C -0.150 4.150 6 N -0.491 5.491 7 Si 0.713 3.287 8 H -0.200 1.200 9 H -0.214 1.214 10 H -0.189 1.189 11 C 0.310 3.690 12 O -0.443 6.443 13 C -0.123 4.123 14 C -0.197 4.197 15 C -0.161 4.161 16 N -0.041 5.041 17 C 0.101 3.899 18 C -0.216 4.216 19 C -0.033 4.033 20 N -0.205 5.205 21 C -0.033 4.033 22 C -0.194 4.194 23 N -0.105 5.105 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.185 0.815 29 H 0.198 0.802 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.791 -17.025 -1.036 21.320 hybrid contribution 0.866 -0.094 -0.666 1.096 sum -11.925 -17.119 -1.702 20.932 Atomic orbital electron populations 1.22135 0.82346 1.02042 1.01487 1.43597 1.04742 1.05517 1.62051 1.19275 1.05109 0.83469 1.36133 0.86634 1.25351 0.98013 0.94685 0.96936 1.69705 1.41959 0.97735 1.39746 0.86945 0.81415 0.78543 0.81819 1.20001 1.21440 1.18850 1.16662 0.86251 0.81063 0.85015 1.90665 1.12561 1.85751 1.55346 1.22859 0.88695 0.96725 1.03981 1.21908 1.00278 0.90797 1.06687 1.22953 0.84996 0.99121 1.09025 1.42780 1.04256 1.04380 1.52717 1.17921 0.81891 0.92917 0.97197 1.21878 1.00219 0.93185 1.06343 1.22640 0.86849 1.00116 0.93724 1.67699 1.35479 1.04213 1.13122 1.22761 0.95912 0.91364 0.93233 1.22075 0.91845 1.02323 1.03136 1.73956 1.17290 0.98202 1.21067 0.91840 0.90633 0.92711 0.91255 0.81505 0.80154 0.83842 0.81777 0.81653 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.37 6.74 59.85 0.40 1.77 16 2 N -0.44 -11.28 2.74 -123.37 -0.34 -11.62 16 3 C -0.31 -8.98 9.59 -15.00 -0.14 -9.12 16 4 H 0.12 3.69 7.70 -52.49 -0.40 3.28 16 5 C 0.06 1.58 5.22 -17.45 -0.09 1.48 16 6 N -0.86 -24.50 13.95 55.50 0.77 -23.73 16 7 Si 0.89 20.70 24.35 -169.99 -4.14 16.56 16 8 H -0.27 -5.89 6.59 56.52 0.37 -5.52 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.26 -6.24 6.74 56.52 0.38 -5.85 16 11 C 0.52 13.12 7.62 -12.45 -0.09 13.03 16 12 O -0.56 -15.72 16.68 5.27 0.09 -15.63 16 13 C 0.04 0.83 6.88 -82.75 -0.57 0.27 16 14 C -0.17 -2.77 10.80 -39.34 -0.42 -3.20 16 15 C -0.02 -0.30 10.82 -16.78 -0.18 -0.48 16 16 N -0.26 -3.86 3.51 -10.37 -0.04 -3.90 16 17 C 0.20 2.46 6.70 -83.36 -0.56 1.90 16 18 C -0.19 -1.74 9.50 -39.26 -0.37 -2.12 16 19 C 0.12 1.05 11.17 -17.59 -0.20 0.85 16 20 N -0.50 -5.13 10.36 -13.32 -0.14 -5.26 16 21 C 0.12 1.22 11.18 -17.59 -0.20 1.02 16 22 C -0.17 -1.99 9.67 -39.25 -0.38 -2.37 16 23 N -0.27 -5.00 7.89 33.42 0.26 -4.74 16 24 H 0.06 1.24 7.20 -51.93 -0.37 0.87 16 25 H 0.08 1.65 4.42 -51.93 -0.23 1.42 16 26 H 0.05 1.13 6.39 -51.93 -0.33 0.80 16 27 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.17 2.48 8.06 -52.49 -0.42 2.05 16 29 H 0.18 1.46 7.04 -52.48 -0.37 1.09 16 30 H 0.14 0.90 6.78 -52.48 -0.36 0.54 16 31 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.15 1.83 7.74 -52.49 -0.41 1.43 16 LS Contribution 285.55 15.07 4.30 4.30 Total: -1.00 -34.08 285.55 -4.95 -39.04 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.92 Total: 1.94 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -2.81 Total: 3.03 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.53 Total: -49.24 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.09 Total: -15.63 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.14 Total: 16.56 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.08 -4.95 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321181771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.405 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds