Wall clock time and date at job start Mon Mar 30 2020 00:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48505 * 109.47229 * 240.00009 * 3 2 1 5 5 H 1.48501 * 109.47331 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47135 * 119.99896 * 3 2 1 7 7 C 1.40027 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.41324 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.40587 * 119.78278 * 180.27342 * 9 7 2 11 11 C 1.38348 * 119.14834 * 180.25214 * 10 9 7 12 12 C 1.38634 * 118.67775 * 359.47952 * 11 10 9 13 13 C 1.39762 * 119.49294 * 0.25911 * 12 11 10 14 14 N 1.38828 * 119.58433 * 179.97438 * 13 12 11 15 15 C 1.46494 * 120.00040 * 359.97438 * 14 13 12 16 16 H 1.09004 * 109.47298 * 325.00128 * 15 14 13 17 17 C 1.53008 * 109.47072 * 85.00202 * 15 14 13 18 18 O 1.42897 * 109.46881 * 64.99657 * 17 15 14 19 19 C 1.52994 * 109.47383 * 205.00001 * 15 14 13 20 20 C 1.53003 * 109.47220 * 65.00349 * 19 15 14 21 21 F 1.39895 * 109.47409 * 65.00122 * 20 19 15 22 22 F 1.39898 * 109.47332 * 185.00371 * 20 19 15 23 23 N 1.31977 * 120.83087 * 0.02562 * 13 12 11 24 24 H 0.97005 * 119.99769 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.42884 * 359.97438 * 10 9 7 26 26 H 1.08002 * 120.66517 * 179.76384 * 11 10 9 27 27 H 1.08000 * 120.25521 * 180.23148 * 12 11 10 28 28 H 0.96996 * 119.99781 * 179.97438 * 14 13 12 29 29 H 1.09004 * 109.47142 * 184.99923 * 17 15 14 30 30 H 1.08996 * 109.46836 * 304.99720 * 17 15 14 31 31 H 0.96704 * 113.99659 * 179.97438 * 18 17 15 32 32 H 1.09000 * 109.47975 * 185.00227 * 19 15 14 33 33 H 1.09003 * 109.47398 * 305.00172 * 19 15 14 34 34 H 1.09007 * 109.46408 * 305.00271 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0953 1.6963 -1.2125 5 1 1.2766 2.7465 0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4366 -0.0005 10 6 2.0083 -3.6514 0.0047 11 6 1.3032 -4.8418 -0.0006 12 6 -0.0823 -4.7944 -0.0001 13 6 -0.7284 -3.5551 0.0004 14 7 -2.1158 -3.5054 0.0005 15 6 -2.8932 -4.7471 -0.0005 16 1 -2.3725 -5.5013 -0.5906 17 6 -3.0573 -5.2472 1.4362 18 8 -3.8404 -4.3114 2.1797 19 6 -4.2719 -4.4852 -0.6099 20 6 -4.1143 -4.1052 -2.0836 21 9 -3.5969 -5.1941 -2.7932 22 9 -5.3619 -3.7553 -2.6110 23 7 -0.0362 -2.4314 -0.0002 24 1 -0.4850 0.8401 -0.0004 25 1 3.0883 -3.6555 0.0084 26 1 1.8219 -5.7892 -0.0006 27 1 -0.6580 -5.7082 -0.0004 28 1 -2.5704 -2.6486 0.0012 29 1 -3.5581 -6.2154 1.4289 30 1 -2.0760 -5.3492 1.8996 31 1 -3.9856 -4.5648 3.1016 32 1 -4.8815 -5.3852 -0.5300 33 1 -4.7569 -3.6692 -0.0741 34 1 -3.4330 -3.2586 -2.1696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321919347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:23 Heat of formation + Delta-G solvation = -120.110677 kcal Electronic energy + Delta-G solvation = -21046.475865 eV Core-core repulsion = 17421.761223 eV Total energy + Delta-G solvation = -3624.714642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.79446 -46.79847 -38.69214 -37.28439 -35.09386 -33.46972 -31.71180 -30.32148 -28.59710 -27.48815 -25.40265 -23.33507 -21.73905 -21.32447 -19.92839 -17.78529 -17.35266 -17.23251 -17.00722 -16.36556 -15.92345 -15.08861 -14.76257 -14.55622 -14.18565 -13.81318 -13.61298 -13.36783 -13.15031 -12.92308 -12.78672 -12.43653 -12.11556 -11.88748 -11.60738 -11.19888 -11.19077 -11.01576 -10.70911 -10.62314 -10.42758 -9.99449 -9.83827 -9.52416 -8.93895 -7.94766 -7.53518 -6.57838 -6.34532 -4.49379 2.87056 3.10024 3.12466 3.20919 3.28157 3.84907 3.97361 4.03404 4.39564 4.47481 4.57760 4.76518 4.82753 5.28544 5.39042 5.46671 5.48861 5.72366 5.89435 6.02265 6.06484 6.13307 6.54348 6.81364 6.86435 6.90185 7.23005 7.55615 7.70741 7.77740 7.88849 8.13466 8.32072 8.63033 8.77739 9.08687 10.22068 10.38105 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.005496 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.292917 B = 5093.567150 C = 5525.787688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.433 4.433 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.031 4.031 12 C -0.371 4.371 13 C 0.412 3.588 14 N -0.729 5.729 15 C 0.169 3.831 16 H 0.098 0.902 17 C 0.061 3.939 18 O -0.565 6.565 19 C -0.169 4.169 20 C 0.259 3.741 21 F -0.207 7.207 22 F -0.212 7.212 23 N -0.529 5.529 24 H 0.270 0.730 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.398 0.602 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.374 0.626 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -6.608 1.067 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.465 4.465 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.339 4.339 11 C -0.055 4.055 12 C -0.397 4.397 13 C 0.172 3.828 14 N -0.366 5.366 15 C 0.061 3.939 16 H 0.115 0.885 17 C -0.018 4.018 18 O -0.370 6.370 19 C -0.207 4.207 20 C 0.205 3.795 21 F -0.188 7.188 22 F -0.193 7.193 23 N -0.251 5.251 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.233 0.767 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.220 0.780 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.660 -5.559 0.445 10.301 hybrid contribution 0.638 -0.262 0.508 0.857 sum -8.022 -5.821 0.953 9.957 Atomic orbital electron populations 1.70131 1.07121 1.27507 1.28823 1.26045 0.94877 1.00906 0.93584 0.86434 0.80113 0.80658 0.79832 1.19003 1.20336 1.19022 1.19559 0.94145 0.89407 1.43392 0.89933 1.18196 0.86891 0.91839 0.86556 1.21540 0.98439 0.93476 1.20406 1.20588 0.93439 0.96368 0.95136 1.20602 0.94637 0.95357 1.29112 1.18492 0.84110 0.90304 0.89872 1.44153 1.02704 1.06162 1.83600 1.20691 0.89996 0.89368 0.93824 0.88466 1.22776 0.95063 0.90741 0.93269 1.86485 1.74242 1.49690 1.26551 1.22804 0.99507 1.05630 0.92799 1.22032 0.80514 0.87946 0.89013 1.92963 1.86968 1.57941 1.80932 1.92954 1.45424 1.92515 1.88451 1.68206 1.07648 1.24273 1.24932 0.91834 0.88723 0.88955 0.89255 0.76702 0.93750 0.92358 0.78020 0.88834 0.87545 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.80 11.46 55.55 0.64 -18.16 16 2 C 0.07 1.81 5.50 -17.35 -0.10 1.72 16 3 Si 0.91 18.65 29.56 -169.99 -5.02 13.63 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 7 C -0.43 -11.64 9.14 -37.74 -0.34 -11.99 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.29 8.04 6.55 -85.00 -0.56 7.48 16 10 C -0.32 -7.89 9.83 -38.66 -0.38 -8.27 16 11 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 12 C -0.37 -8.24 8.84 -38.87 -0.34 -8.58 16 13 C 0.41 9.68 7.63 -155.31 -1.18 8.49 16 14 N -0.73 -13.86 4.56 -53.91 -0.25 -14.10 16 15 C 0.17 2.49 2.01 -67.93 -0.14 2.36 16 16 H 0.10 1.48 6.11 -51.93 -0.32 1.16 16 17 C 0.06 0.81 6.76 37.16 0.25 1.06 16 18 O -0.57 -7.45 12.83 -35.23 -0.45 -7.90 16 19 C -0.17 -2.12 4.69 -26.73 -0.13 -2.24 16 20 C 0.26 3.59 5.24 37.16 0.19 3.79 16 21 F -0.21 -3.17 16.93 2.25 0.04 -3.14 16 22 F -0.21 -3.04 17.34 2.25 0.04 -3.01 16 23 N -0.53 -14.32 7.89 -10.33 -0.08 -14.40 16 24 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 25 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 26 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.09 1.73 6.15 -52.49 -0.32 1.41 16 28 H 0.40 7.75 8.72 -40.82 -0.36 7.39 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 31 H 0.37 3.31 9.12 45.56 0.42 3.73 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.11 1.34 7.73 -51.93 -0.40 0.94 16 34 H 0.12 1.68 7.62 -51.92 -0.40 1.28 16 LS Contribution 299.94 15.07 4.52 4.52 Total: -1.00 -30.34 299.94 -6.71 -37.05 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -3.02 Total: 12.80 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.12 Total: -7.29 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.31 Total: -46.66 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.45 Total: -7.90 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.08 Total: -6.14 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.34 -6.71 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321919347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.062 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds