Wall clock time and date at job start Mon Mar 30 2020 00:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86796 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47355 * 240.00705 * 3 2 1 5 5 H 1.48497 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47362 * 120.00222 * 3 2 1 7 7 C 1.40034 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.41308 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78414 * 179.72624 * 9 7 2 11 11 C 1.38352 * 119.14990 * 180.27674 * 10 9 7 12 12 C 1.38641 * 118.67956 * 0.02562 * 11 10 9 13 13 C 1.39754 * 119.49095 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.58442 * 179.97438 * 13 12 11 15 15 C 1.46496 * 120.00122 * 0.02562 * 14 13 12 16 16 H 1.09002 * 109.46975 * 34.99751 * 15 14 13 17 17 C 1.53004 * 109.47297 * 274.99961 * 15 14 13 18 18 O 1.42904 * 109.46877 * 295.00111 * 17 15 14 19 19 C 1.52997 * 109.47431 * 154.99852 * 15 14 13 20 20 C 1.53000 * 109.47062 * 294.99764 * 19 15 14 21 21 F 1.39897 * 109.46836 * 65.00249 * 20 19 15 22 22 F 1.39900 * 109.47156 * 184.99704 * 20 19 15 23 23 N 1.31978 * 120.83452 * 359.97438 * 13 12 11 24 24 H 0.97000 * 119.99829 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.42779 * 0.25992 * 10 9 7 26 26 H 1.07995 * 120.66404 * 180.02562 * 11 10 9 27 27 H 1.08001 * 120.25414 * 180.02562 * 12 11 10 28 28 H 0.97001 * 120.00209 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.47125 * 54.99656 * 17 15 14 30 30 H 1.08997 * 109.47587 * 174.99611 * 17 15 14 31 31 H 0.96695 * 113.99769 * 180.02562 * 18 17 15 32 32 H 1.08999 * 109.47326 * 55.00167 * 19 15 14 33 33 H 1.09001 * 109.47080 * 175.00097 * 19 15 14 34 34 H 1.08998 * 109.47286 * 305.00429 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6963 1.2124 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3009 -2.4365 -0.0005 10 6 2.0084 -3.6514 -0.0069 11 6 1.3034 -4.8418 -0.0127 12 6 -0.0822 -4.7944 -0.0125 13 6 -0.7283 -3.5551 -0.0071 14 7 -2.1156 -3.5055 -0.0074 15 6 -2.8931 -4.7471 -0.0129 16 1 -2.3726 -5.5042 0.5736 17 6 -3.0567 -5.2402 -1.4520 18 8 -3.8395 -4.3006 -2.1913 19 6 -4.2720 -4.4881 0.5973 20 6 -4.1150 -4.1155 2.0729 21 9 -3.4302 -2.8999 2.1765 22 9 -5.3789 -3.9901 2.6593 23 7 -0.0361 -2.4315 -0.0017 24 1 -0.4850 0.8401 0.0004 25 1 3.0884 -3.6554 -0.0076 26 1 1.8220 -5.7890 -0.0172 27 1 -0.6580 -5.7082 -0.0165 28 1 -2.5703 -2.6486 -0.0041 29 1 -2.0752 -5.3398 -1.9157 30 1 -3.5574 -6.2083 -1.4498 31 1 -3.9844 -4.5495 -3.1144 32 1 -4.7568 -3.6695 0.0654 33 1 -4.8815 -5.3878 0.5127 34 1 -3.5518 -4.8946 2.5865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321919348.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:25 Heat of formation + Delta-G solvation = -115.987582 kcal Electronic energy + Delta-G solvation = -21216.885000 eV Core-core repulsion = 17592.349148 eV Total energy + Delta-G solvation = -3624.535851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.68407 -46.66655 -38.61010 -37.24162 -35.01959 -33.41726 -31.71945 -30.26592 -28.58298 -27.34608 -25.36246 -23.29220 -21.73145 -21.20616 -19.97030 -17.71395 -17.31840 -17.10654 -16.97467 -16.18667 -15.92499 -14.98427 -14.73094 -14.50542 -14.13650 -13.70036 -13.60183 -13.36135 -13.02046 -12.84026 -12.53387 -12.31983 -12.08249 -11.93111 -11.66628 -11.16171 -11.10963 -10.97170 -10.63974 -10.57519 -10.38945 -9.95757 -9.81226 -9.46363 -8.87289 -7.88878 -7.45091 -6.47876 -6.27245 -4.44130 2.92186 3.14031 3.16161 3.26747 3.33058 3.93625 4.01960 4.06255 4.38331 4.43686 4.60745 4.82263 4.89296 5.26618 5.37607 5.43409 5.55540 5.69573 5.91149 6.04494 6.12224 6.16007 6.55881 6.87806 6.91168 6.96297 7.29572 7.61394 7.73242 7.83218 7.93879 8.20750 8.40054 8.73798 8.84178 9.15946 10.29990 10.45476 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.005881 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.158779 B = 4760.122695 C = 5375.150210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.433 4.433 8 H 0.082 0.918 9 C 0.292 3.708 10 C -0.318 4.318 11 C -0.031 4.031 12 C -0.377 4.377 13 C 0.416 3.584 14 N -0.723 5.723 15 C 0.170 3.830 16 H 0.092 0.908 17 C 0.061 3.939 18 O -0.564 6.564 19 C -0.172 4.172 20 C 0.261 3.739 21 F -0.189 7.189 22 F -0.215 7.215 23 N -0.528 5.528 24 H 0.271 0.729 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.401 0.599 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.373 0.627 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 -8.631 -0.479 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.155 4.155 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.465 4.465 8 H 0.100 0.900 9 C 0.165 3.835 10 C -0.341 4.341 11 C -0.055 4.055 12 C -0.403 4.403 13 C 0.176 3.824 14 N -0.360 5.360 15 C 0.062 3.938 16 H 0.110 0.890 17 C -0.019 4.019 18 O -0.369 6.369 19 C -0.211 4.211 20 C 0.208 3.792 21 F -0.170 7.170 22 F -0.196 7.196 23 N -0.249 5.249 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.238 0.762 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.219 0.781 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.955 -7.528 0.135 11.699 hybrid contribution 0.657 -0.130 -0.529 0.853 sum -8.298 -7.657 -0.394 11.298 Atomic orbital electron populations 1.70141 1.07062 1.27524 1.28404 1.26055 0.94863 1.00870 0.93740 0.86446 0.80098 0.80791 0.79763 1.19058 1.20350 1.19042 1.19550 0.94090 0.89444 1.43457 0.89992 1.18206 0.86961 0.91802 0.86481 1.21526 0.98355 0.93520 1.20730 1.20564 0.93449 0.96270 0.95261 1.20572 0.94602 0.95259 1.29885 1.18495 0.84239 0.90187 0.89465 1.44146 1.02541 1.06244 1.83021 1.20642 0.89934 0.89519 0.93740 0.88992 1.22785 0.95054 0.90583 0.93450 1.86507 1.74214 1.49683 1.26460 1.22857 0.99534 1.05366 0.93339 1.21889 0.77164 0.85198 0.94992 1.93077 1.79352 1.47629 1.96965 1.92955 1.43768 1.96765 1.86153 1.68224 1.07513 1.24345 1.24864 0.91797 0.88830 0.89101 0.89441 0.76219 0.92383 0.93840 0.78081 0.88214 0.88243 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.39 11.46 55.55 0.64 -18.75 16 2 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 3 Si 0.90 19.14 29.56 -169.99 -5.02 14.11 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.43 -11.92 9.14 -37.74 -0.34 -12.26 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.69 16 9 C 0.29 8.23 6.55 -85.00 -0.56 7.67 16 10 C -0.32 -8.08 9.83 -38.65 -0.38 -8.46 16 11 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 12 C -0.38 -8.41 8.84 -38.87 -0.34 -8.75 16 13 C 0.42 10.06 7.63 -155.32 -1.18 8.87 16 14 N -0.72 -14.44 4.08 -53.91 -0.22 -14.66 16 15 C 0.17 2.48 2.05 -67.93 -0.14 2.34 16 16 H 0.09 1.27 6.44 -51.93 -0.33 0.94 16 17 C 0.06 0.80 6.76 37.16 0.25 1.05 16 18 O -0.56 -7.64 12.83 -35.23 -0.45 -8.09 16 19 C -0.17 -2.12 4.77 -26.73 -0.13 -2.25 16 20 C 0.26 3.53 5.29 37.16 0.20 3.72 16 21 F -0.19 -3.42 15.42 2.25 0.03 -3.38 16 22 F -0.21 -3.00 17.34 2.25 0.04 -2.96 16 23 N -0.53 -14.75 7.89 -10.33 -0.08 -14.84 16 24 H 0.27 6.79 8.29 -40.82 -0.34 6.45 16 25 H 0.09 2.22 8.06 -52.49 -0.42 1.79 16 26 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.09 1.66 6.15 -52.49 -0.32 1.34 16 28 H 0.40 8.68 7.97 -40.82 -0.33 8.36 16 29 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.37 3.39 9.12 45.56 0.42 3.81 16 32 H 0.10 1.38 7.73 -51.93 -0.40 0.97 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 298.21 15.07 4.49 4.49 Total: -1.00 -32.00 298.21 -6.73 -38.73 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -3.03 Total: 12.78 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.12 Total: -7.43 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.33 Total: -48.25 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.45 Total: -8.09 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.07 Total: -6.35 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.00 -6.73 -38.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321919348.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.258 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds