Wall clock time and date at job start Mon Mar 30 2020 00:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86796 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47355 * 240.00705 * 3 2 1 5 5 H 1.48497 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47362 * 120.00222 * 3 2 1 7 7 C 1.40034 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.41308 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78414 * 179.72624 * 9 7 2 11 11 C 1.38352 * 119.14990 * 180.27674 * 10 9 7 12 12 C 1.38641 * 118.67956 * 0.02562 * 11 10 9 13 13 C 1.39754 * 119.49095 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.58442 * 179.97438 * 13 12 11 15 15 C 1.46496 * 120.00122 * 0.02562 * 14 13 12 16 16 H 1.09002 * 109.46975 * 34.99751 * 15 14 13 17 17 C 1.53004 * 109.47297 * 274.99961 * 15 14 13 18 18 O 1.42904 * 109.46877 * 295.00111 * 17 15 14 19 19 C 1.52997 * 109.47431 * 154.99852 * 15 14 13 20 20 C 1.53000 * 109.47062 * 294.99764 * 19 15 14 21 21 F 1.39897 * 109.46836 * 65.00249 * 20 19 15 22 22 F 1.39900 * 109.47156 * 184.99704 * 20 19 15 23 23 N 1.31978 * 120.83452 * 359.97438 * 13 12 11 24 24 H 0.97000 * 119.99829 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.42779 * 0.25992 * 10 9 7 26 26 H 1.07995 * 120.66404 * 180.02562 * 11 10 9 27 27 H 1.08001 * 120.25414 * 180.02562 * 12 11 10 28 28 H 0.97001 * 120.00209 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.47125 * 54.99656 * 17 15 14 30 30 H 1.08997 * 109.47587 * 174.99611 * 17 15 14 31 31 H 0.96695 * 113.99769 * 180.02562 * 18 17 15 32 32 H 1.08999 * 109.47326 * 55.00167 * 19 15 14 33 33 H 1.09001 * 109.47080 * 175.00097 * 19 15 14 34 34 H 1.08998 * 109.47286 * 305.00429 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6963 1.2124 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3009 -2.4365 -0.0005 10 6 2.0084 -3.6514 -0.0069 11 6 1.3034 -4.8418 -0.0127 12 6 -0.0822 -4.7944 -0.0125 13 6 -0.7283 -3.5551 -0.0071 14 7 -2.1156 -3.5055 -0.0074 15 6 -2.8931 -4.7471 -0.0129 16 1 -2.3726 -5.5042 0.5736 17 6 -3.0567 -5.2402 -1.4520 18 8 -3.8395 -4.3006 -2.1913 19 6 -4.2720 -4.4881 0.5973 20 6 -4.1150 -4.1155 2.0729 21 9 -3.4302 -2.8999 2.1765 22 9 -5.3789 -3.9901 2.6593 23 7 -0.0361 -2.4315 -0.0017 24 1 -0.4850 0.8401 0.0004 25 1 3.0884 -3.6554 -0.0076 26 1 1.8220 -5.7890 -0.0172 27 1 -0.6580 -5.7082 -0.0165 28 1 -2.5703 -2.6486 -0.0041 29 1 -2.0752 -5.3398 -1.9157 30 1 -3.5574 -6.2083 -1.4498 31 1 -3.9844 -4.5495 -3.1144 32 1 -4.7568 -3.6695 0.0654 33 1 -4.8815 -5.3878 0.5127 34 1 -3.5518 -4.8946 2.5865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321919348.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:24 Heat of formation + Delta-G solvation = -138.608291 kcal Electronic energy + Delta-G solvation = -21217.865907 eV Core-core repulsion = 17592.349148 eV Total energy + Delta-G solvation = -3625.516759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.83738 -47.85962 -40.25986 -38.60000 -36.33466 -35.22465 -33.21620 -32.11878 -30.20053 -28.60988 -27.25931 -24.40303 -23.43143 -22.83231 -21.45565 -19.29028 -18.66829 -18.32991 -18.13013 -17.69343 -17.23970 -16.48586 -16.43973 -16.02693 -15.50761 -15.14528 -14.86874 -14.73399 -14.49880 -14.22134 -14.16276 -13.70594 -13.53264 -13.13261 -13.06845 -12.81084 -12.70201 -12.53568 -12.32420 -12.00291 -11.76455 -11.71965 -11.25639 -10.86217 -10.60249 -9.79886 -9.37398 -8.22121 -8.18707 -6.45278 1.10361 1.40339 1.40750 1.52645 1.59835 2.25306 2.63582 2.90132 2.95627 3.39671 3.43665 3.58574 3.77087 4.08689 4.24497 4.30565 4.39871 4.48816 4.55361 4.66192 4.83129 4.86833 5.01272 5.04235 5.04911 5.19253 5.40683 5.75476 6.00567 6.12379 6.25239 6.61355 6.86553 6.93623 7.00053 7.26447 8.40514 8.55438 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.005881 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.158779 B = 4760.122695 C = 5375.150210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.025 3.975 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.474 4.474 8 H 0.085 0.915 9 C 0.259 3.741 10 C -0.349 4.349 11 C -0.029 4.029 12 C -0.366 4.366 13 C 0.399 3.601 14 N -0.720 5.720 15 C 0.159 3.841 16 H 0.108 0.892 17 C 0.066 3.934 18 O -0.586 6.586 19 C -0.158 4.158 20 C 0.252 3.748 21 F -0.221 7.221 22 F -0.218 7.218 23 N -0.568 5.568 24 H 0.274 0.726 25 H 0.099 0.901 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.389 0.611 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.392 0.608 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 -10.500 -0.608 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.197 4.197 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.507 4.507 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.372 4.372 11 C -0.053 4.053 12 C -0.392 4.392 13 C 0.158 3.842 14 N -0.354 5.354 15 C 0.053 3.947 16 H 0.125 0.875 17 C -0.014 4.014 18 O -0.393 6.393 19 C -0.196 4.196 20 C 0.199 3.801 21 F -0.203 7.203 22 F -0.199 7.199 23 N -0.290 5.290 24 H 0.084 0.916 25 H 0.117 0.883 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.223 0.777 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.241 0.759 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.763 -9.456 -0.011 13.592 hybrid contribution 0.758 0.255 -0.500 0.943 sum -9.005 -9.201 -0.511 12.885 Atomic orbital electron populations 1.70268 1.08740 1.28533 1.29763 1.26958 0.95697 1.04354 0.92663 0.85252 0.78605 0.75722 0.79990 1.18298 1.19530 1.18397 1.19901 0.94515 0.90631 1.45608 0.89703 1.18674 0.87759 0.93183 0.87216 1.21674 0.98861 0.93944 1.22698 1.21014 0.93913 0.96972 0.93411 1.20977 0.94803 0.96000 1.27398 1.18970 0.85886 0.90266 0.89033 1.44382 1.01264 1.07762 1.81995 1.21084 0.90471 0.87545 0.95606 0.87482 1.22721 0.94607 0.92266 0.91769 1.86468 1.74098 1.50635 1.28123 1.22791 0.98457 1.06584 0.91799 1.22367 0.77052 0.84374 0.96320 1.93020 1.80167 1.49939 1.97177 1.92945 1.43984 1.96732 1.86276 1.68175 1.07888 1.26653 1.26332 0.91584 0.88316 0.85185 0.85487 0.77700 0.94626 0.89238 0.75931 0.89919 0.84036 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -42.71 11.46 21.84 0.25 -42.46 16 2 C 0.02 1.34 5.50 85.29 0.47 1.81 16 3 Si 0.98 40.31 29.56 68.60 2.03 42.34 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.47 -27.18 9.14 23.46 0.21 -26.96 16 8 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.26 15.11 6.55 40.19 0.26 15.37 16 10 C -0.35 -17.96 9.83 22.87 0.22 -17.73 16 11 C -0.03 -1.27 10.15 22.39 0.23 -1.05 16 12 C -0.37 -15.61 8.84 22.73 0.20 -15.41 16 13 C 0.40 19.31 7.63 133.40 1.02 20.33 16 14 N -0.72 -28.48 4.08 -324.48 -1.32 -29.81 16 15 C 0.16 4.20 2.05 44.99 0.09 4.29 16 16 H 0.11 2.51 6.44 -2.39 -0.02 2.50 16 17 C 0.07 1.50 6.76 71.98 0.49 1.99 16 18 O -0.59 -14.60 12.83 -148.98 -1.91 -16.51 16 19 C -0.16 -3.45 4.77 30.59 0.15 -3.30 16 20 C 0.25 6.32 5.29 71.98 0.38 6.70 16 21 F -0.22 -8.06 15.42 44.97 0.69 -7.36 16 22 F -0.22 -5.70 17.34 44.97 0.78 -4.92 16 23 N -0.57 -32.76 7.89 -186.60 -1.47 -34.23 16 24 H 0.27 14.28 8.29 -92.71 -0.77 13.51 16 25 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 26 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 27 H 0.13 4.31 6.15 -2.91 -0.02 4.29 16 28 H 0.39 17.24 7.97 -92.71 -0.74 16.51 16 29 H 0.04 0.98 7.75 -2.39 -0.02 0.96 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.39 6.25 9.12 -74.06 -0.68 5.58 16 32 H 0.08 2.15 7.73 -2.39 -0.02 2.13 16 33 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -73.30 298.21 2.51 -70.79 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: -0.26 Total: 36.12 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 3.72 Total: -13.95 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -2.55 Total: -106.50 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -1.91 Total: -16.51 kcal Atomic # 9 Polarization: -13.76 SS G_CDS: 1.47 Total: -12.29 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -73.30 2.51 -70.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321919348.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.818 kcal (2) G-P(sol) polarization free energy of solvation -73.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds