Wall clock time and date at job start Mon Mar 30 2020 00:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99594 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46972 * 179.97438 * 11 10 9 13 13 O 1.45210 * 109.47335 * 64.99954 * 12 11 10 14 14 C 1.34228 * 117.00077 * 180.02562 * 13 12 11 15 15 O 1.20820 * 119.99960 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99712 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46863 * 179.97438 * 16 14 13 18 18 H 1.08995 * 110.61699 * 303.38918 * 17 16 14 19 19 C 1.54264 * 110.68867 * 66.45627 * 17 16 14 20 20 O 1.45584 * 106.37176 * 117.32820 * 19 17 16 21 21 C 1.34525 * 109.63943 * 21.26440 * 20 19 17 22 22 O 1.20828 * 126.43652 * 147.15357 * 21 20 19 23 23 C 1.51791 * 107.14185 * 327.17699 * 21 20 19 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 26 26 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 27 27 H 1.09005 * 109.46851 * 299.99626 * 11 10 9 28 28 H 1.08995 * 109.47252 * 60.00069 * 11 10 9 29 29 H 1.09000 * 109.47310 * 184.99675 * 12 11 10 30 30 H 1.08994 * 109.47524 * 304.99888 * 12 11 10 31 31 H 1.08997 * 109.47319 * 299.99534 * 16 14 13 32 32 H 1.09003 * 109.46683 * 60.00110 * 16 14 13 33 33 H 1.09004 * 110.07096 * 236.55462 * 19 17 16 34 34 H 1.08999 * 110.07492 * 358.03702 * 19 17 16 35 35 H 1.09004 * 110.61012 * 272.12285 * 23 21 20 36 36 H 1.08993 * 110.61329 * 149.13394 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8754 0.0013 12 6 2.6483 -5.9561 0.0020 13 8 3.3987 -5.8885 1.2433 14 6 4.3934 -6.7755 1.4031 15 8 4.6289 -7.5820 0.5348 16 6 5.2163 -6.7654 2.6656 17 6 6.2739 -7.8687 2.5937 18 1 5.8058 -8.8389 2.4275 19 6 7.3049 -7.5642 1.4873 20 8 8.5894 -7.4093 2.1547 21 6 8.5519 -8.0170 3.3543 22 8 9.4741 -8.5649 3.9104 23 6 7.1333 -7.8858 3.8780 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6248 -2.5571 -0.8896 27 1 0.9442 -4.9823 0.8906 28 1 0.9462 -4.9826 -0.8894 29 1 2.1824 -6.9374 -0.0879 30 1 3.3224 -5.7955 -0.8393 31 1 5.7068 -5.7979 2.7718 32 1 4.5673 -6.9401 3.5237 33 1 7.3486 -8.3915 0.7788 34 1 7.0374 -6.6429 0.9700 35 1 7.0134 -6.9549 4.4322 36 1 6.8739 -8.7411 4.5018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324492698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:16 Heat of formation + Delta-G solvation = -225.250901 kcal Electronic energy + Delta-G solvation = -20288.195139 eV Core-core repulsion = 16737.716040 eV Total energy + Delta-G solvation = -3550.479100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.46677 -40.43260 -37.96026 -37.32570 -36.33128 -34.66480 -33.11448 -30.58513 -29.37236 -27.77307 -26.46421 -23.19156 -22.60411 -21.89783 -21.74313 -20.53630 -17.98898 -17.67114 -17.15157 -17.10759 -16.68306 -16.62826 -16.41028 -15.63478 -14.91286 -14.67369 -14.16771 -13.81323 -13.71989 -13.62356 -13.44335 -12.91843 -12.78146 -12.47131 -12.06348 -11.91626 -11.80974 -11.62765 -11.38178 -10.86969 -10.80289 -10.77016 -10.66098 -10.50785 -10.34850 -10.12951 -9.01029 -8.71621 -8.34413 -6.53244 -4.22614 1.54008 2.01592 2.49461 2.99704 3.39687 3.41988 3.54923 3.60965 3.72406 4.07228 4.17841 4.31221 4.52965 4.58660 4.77731 4.82677 4.99740 5.01836 5.08264 5.13759 5.24647 5.26270 5.29488 5.46261 5.63948 5.71885 5.87654 6.34085 6.39240 6.63272 7.02032 7.05442 7.58697 7.76510 8.07414 8.53750 8.71822 9.47891 10.87011 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.003125 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.571018 B = 8959.272585 C = 9814.754742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 1.079 2.921 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.598 4.598 8 H 0.061 0.939 9 C 0.186 3.814 10 O -0.382 6.382 11 C 0.058 3.942 12 C 0.075 3.925 13 O -0.339 6.339 14 C 0.460 3.540 15 O -0.516 6.516 16 C -0.110 4.110 17 C -0.110 4.110 18 H 0.110 0.890 19 C 0.065 3.935 20 O -0.356 6.356 21 C 0.489 3.511 22 O -0.449 6.449 23 C -0.183 4.183 24 H 0.267 0.733 25 H -0.002 1.002 26 H -0.004 1.004 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 -16.948 5.923 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.186 4.186 3 Si 0.906 3.094 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.636 4.636 8 H 0.079 0.921 9 C 0.111 3.889 10 O -0.302 6.302 11 C -0.020 4.020 12 C 0.002 3.998 13 O -0.255 6.255 14 C 0.303 3.697 15 O -0.406 6.406 16 C -0.147 4.147 17 C -0.129 4.129 18 H 0.128 0.872 19 C -0.009 4.009 20 O -0.273 6.273 21 C 0.328 3.672 22 O -0.331 6.331 23 C -0.221 4.221 24 H 0.077 0.923 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.371 -15.640 5.799 19.132 hybrid contribution -0.477 -1.834 -0.170 1.903 sum 8.894 -17.474 5.628 20.399 Atomic orbital electron populations 1.70815 1.06845 1.30416 1.46490 1.25957 0.96395 1.02739 0.93475 0.83397 0.74738 0.74436 0.76822 1.20592 1.21133 1.21170 1.21889 0.95486 0.90331 1.55935 0.92074 1.20327 0.89367 0.84896 0.94280 1.87946 1.34710 1.12397 1.95136 1.22376 0.93457 0.85523 1.00616 1.23219 0.93671 0.98765 0.84159 1.86602 1.43354 1.53923 1.41618 1.23535 0.79266 0.78036 0.88838 1.90660 1.68026 1.38198 1.43717 1.21482 0.96709 1.01485 0.95062 1.22248 0.95374 1.01067 0.94223 0.87154 1.24087 0.77863 1.04924 0.94076 1.87123 1.38179 1.69300 1.32741 1.23273 0.89984 0.73213 0.80687 1.90723 1.44545 1.35962 1.61907 1.23130 0.92933 1.07055 0.98990 0.92320 0.98473 0.98589 0.93140 0.91872 0.90208 0.90301 0.86499 0.86421 0.88641 0.87528 0.85989 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.41 13.65 55.43 0.76 -26.65 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.08 24.98 29.90 -169.99 -5.08 19.90 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.60 -17.50 9.43 -34.44 -0.32 -17.83 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 4.92 5.00 36.01 0.18 5.10 16 10 O -0.38 -8.94 10.30 -38.79 -0.40 -9.34 16 11 C 0.06 0.98 6.33 37.16 0.24 1.22 16 12 C 0.08 1.07 5.85 37.16 0.22 1.28 16 13 O -0.34 -4.85 10.19 -42.02 -0.43 -5.28 16 14 C 0.46 5.19 7.49 36.01 0.27 5.46 16 15 O -0.52 -6.60 14.86 -18.75 -0.28 -6.88 16 16 C -0.11 -0.76 5.04 -27.88 -0.14 -0.90 16 17 C -0.11 -0.69 2.75 -89.15 -0.24 -0.94 16 18 H 0.11 0.63 8.04 -51.93 -0.42 0.21 16 19 C 0.06 0.52 6.51 37.82 0.25 0.77 16 20 O -0.36 -3.74 11.07 -39.59 -0.44 -4.18 16 21 C 0.49 4.89 8.57 36.54 0.31 5.20 16 22 O -0.45 -6.05 18.00 -18.29 -0.33 -6.37 16 23 C -0.18 -1.03 6.58 -26.54 -0.17 -1.21 16 24 H 0.27 7.94 7.22 -40.82 -0.29 7.65 16 25 H 0.00 -0.06 8.01 -51.93 -0.42 -0.48 16 26 H 0.00 -0.09 8.01 -51.93 -0.42 -0.51 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.08 1.15 8.13 -51.93 -0.42 0.72 16 31 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.11 0.89 7.33 -51.93 -0.38 0.51 16 35 H 0.12 0.50 7.82 -51.93 -0.41 0.10 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -35.57 317.64 -5.85 -41.42 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: -4.92 Total: -5.98 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 0.48 Total: -1.42 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.76 Total: -26.65 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.87 Total: -32.05 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.57 -5.85 -41.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324492698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.827 kcal (2) G-P(sol) polarization free energy of solvation -35.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds