Wall clock time and date at job start Mon Mar 30 2020 00:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99594 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46972 * 179.97438 * 11 10 9 13 13 O 1.45210 * 109.47335 * 64.99954 * 12 11 10 14 14 C 1.34228 * 117.00077 * 180.02562 * 13 12 11 15 15 O 1.20820 * 119.99960 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99712 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46863 * 179.97438 * 16 14 13 18 18 H 1.08995 * 110.61699 * 303.38918 * 17 16 14 19 19 C 1.54264 * 110.68867 * 66.45627 * 17 16 14 20 20 O 1.45584 * 106.37176 * 117.32820 * 19 17 16 21 21 C 1.34525 * 109.63943 * 21.26440 * 20 19 17 22 22 O 1.20828 * 126.43652 * 147.15357 * 21 20 19 23 23 C 1.51791 * 107.14185 * 327.17699 * 21 20 19 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 26 26 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 27 27 H 1.09005 * 109.46851 * 299.99626 * 11 10 9 28 28 H 1.08995 * 109.47252 * 60.00069 * 11 10 9 29 29 H 1.09000 * 109.47310 * 184.99675 * 12 11 10 30 30 H 1.08994 * 109.47524 * 304.99888 * 12 11 10 31 31 H 1.08997 * 109.47319 * 299.99534 * 16 14 13 32 32 H 1.09003 * 109.46683 * 60.00110 * 16 14 13 33 33 H 1.09004 * 110.07096 * 236.55462 * 19 17 16 34 34 H 1.08999 * 110.07492 * 358.03702 * 19 17 16 35 35 H 1.09004 * 110.61012 * 272.12285 * 23 21 20 36 36 H 1.08993 * 110.61329 * 149.13394 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8754 0.0013 12 6 2.6483 -5.9561 0.0020 13 8 3.3987 -5.8885 1.2433 14 6 4.3934 -6.7755 1.4031 15 8 4.6289 -7.5820 0.5348 16 6 5.2163 -6.7654 2.6656 17 6 6.2739 -7.8687 2.5937 18 1 5.8058 -8.8389 2.4275 19 6 7.3049 -7.5642 1.4873 20 8 8.5894 -7.4093 2.1547 21 6 8.5519 -8.0170 3.3543 22 8 9.4741 -8.5649 3.9104 23 6 7.1333 -7.8858 3.8780 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6248 -2.5571 -0.8896 27 1 0.9442 -4.9823 0.8906 28 1 0.9462 -4.9826 -0.8894 29 1 2.1824 -6.9374 -0.0879 30 1 3.3224 -5.7955 -0.8393 31 1 5.7068 -5.7979 2.7718 32 1 4.5673 -6.9401 3.5237 33 1 7.3486 -8.3915 0.7788 34 1 7.0374 -6.6429 0.9700 35 1 7.0134 -6.9549 4.4322 36 1 6.8739 -8.7411 4.5018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324492698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:16 Heat of formation + Delta-G solvation = -248.681169 kcal Electronic energy + Delta-G solvation = -20289.211152 eV Core-core repulsion = 16737.716040 eV Total energy + Delta-G solvation = -3551.495113 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20745 -41.35512 -39.00570 -38.67275 -37.54098 -35.32322 -35.24983 -31.83320 -30.13462 -28.69407 -28.25869 -24.79435 -24.20944 -22.86804 -22.44002 -21.29640 -19.23411 -18.87049 -18.45119 -17.98784 -17.76991 -17.49476 -17.26706 -17.00025 -16.48041 -15.78380 -15.52546 -15.23020 -14.87384 -14.54246 -14.27360 -14.18676 -13.78198 -13.57617 -13.55754 -13.03250 -12.95100 -12.62349 -12.54622 -12.24044 -12.16719 -11.89684 -11.72810 -11.61515 -11.53660 -11.25768 -10.89496 -10.84774 -10.39175 -8.83120 -6.54634 0.79853 1.15769 1.54523 1.62661 1.63231 1.83906 2.30521 2.49261 2.92946 2.94836 3.03673 3.15291 3.52237 3.56416 3.85836 3.87336 4.04879 4.23640 4.33543 4.34697 4.39786 4.46812 4.51516 4.58147 4.64451 4.66732 4.80329 4.89333 4.98052 5.45243 5.65357 5.67085 5.91383 6.30519 6.33129 6.59959 6.68988 7.25626 8.58435 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.003125 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.571018 B = 8959.272585 C = 9814.754742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.027 4.027 3 Si 1.127 2.873 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.626 4.626 8 H 0.053 0.947 9 C 0.195 3.805 10 O -0.402 6.402 11 C 0.049 3.951 12 C 0.080 3.920 13 O -0.361 6.361 14 C 0.457 3.543 15 O -0.534 6.534 16 C -0.103 4.103 17 C -0.100 4.100 18 H 0.121 0.879 19 C 0.059 3.941 20 O -0.379 6.379 21 C 0.483 3.517 22 O -0.494 6.494 23 C -0.164 4.164 24 H 0.257 0.743 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.812 -17.144 6.850 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.225 4.225 3 Si 0.946 3.054 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.664 4.664 8 H 0.072 0.928 9 C 0.120 3.880 10 O -0.322 6.322 11 C -0.028 4.028 12 C 0.006 3.994 13 O -0.277 6.277 14 C 0.302 3.698 15 O -0.425 6.425 16 C -0.140 4.140 17 C -0.119 4.119 18 H 0.139 0.861 19 C -0.014 4.014 20 O -0.297 6.297 21 C 0.326 3.674 22 O -0.380 6.380 23 C -0.202 4.202 24 H 0.066 0.934 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.163 0.837 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.450 -15.876 6.718 19.659 hybrid contribution -0.505 -1.883 -0.508 2.015 sum 8.945 -17.759 6.210 20.832 Atomic orbital electron populations 1.70934 1.07728 1.29935 1.47870 1.27560 0.96459 1.06513 0.91974 0.82831 0.74070 0.70260 0.78285 1.20199 1.19109 1.19344 1.22278 0.95453 0.92131 1.56496 0.92839 1.19994 0.89216 0.85550 0.93217 1.87881 1.34968 1.14099 1.95257 1.22727 0.94949 0.83306 1.01819 1.23122 0.93065 0.98888 0.84278 1.86597 1.44450 1.55298 1.41402 1.24366 0.78543 0.76958 0.89928 1.90654 1.68297 1.38795 1.44727 1.21633 0.96547 1.02132 0.93681 1.22218 0.94628 1.01383 0.93635 0.86098 1.24202 0.77701 1.04757 0.94770 1.87090 1.39764 1.69262 1.33595 1.24000 0.91247 0.71839 0.80285 1.90694 1.46505 1.37974 1.62777 1.23123 0.89053 1.09247 0.98762 0.93376 0.99533 0.99496 0.92342 0.90261 0.87075 0.91102 0.85567 0.83316 0.88572 0.88062 0.83677 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.65 21.45 0.29 -55.83 16 2 C -0.03 -1.57 5.46 84.65 0.46 -1.10 16 3 Si 1.13 49.21 29.90 68.60 2.05 51.26 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.63 -36.86 9.43 25.60 0.24 -36.61 16 8 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 9 C 0.20 10.49 5.00 71.24 0.36 10.85 16 10 O -0.40 -18.84 10.30 -145.57 -1.50 -20.34 16 11 C 0.05 1.61 6.33 71.98 0.46 2.07 16 12 C 0.08 2.15 5.85 71.98 0.42 2.57 16 13 O -0.36 -9.73 10.19 -48.75 -0.50 -10.23 16 14 C 0.46 9.37 7.49 71.24 0.53 9.90 16 15 O -0.53 -12.75 14.86 21.98 0.33 -12.43 16 16 C -0.10 -1.09 5.04 29.85 0.15 -0.94 16 17 C -0.10 -0.97 2.75 -9.84 -0.03 -1.00 16 18 H 0.12 0.99 8.04 -2.39 -0.02 0.97 16 19 C 0.06 0.90 6.51 72.41 0.47 1.37 16 20 O -0.38 -7.81 11.07 -54.73 -0.61 -8.41 16 21 C 0.48 9.23 8.57 71.58 0.61 9.84 16 22 O -0.49 -13.33 18.00 21.51 0.39 -12.94 16 23 C -0.16 -1.35 6.58 30.72 0.20 -1.14 16 24 H 0.26 15.57 7.22 -92.70 -0.67 14.90 16 25 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 26 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 27 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.11 2.28 8.13 -2.39 -0.02 2.26 16 30 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 31 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.10 1.63 7.33 -2.39 -0.02 1.61 16 35 H 0.15 0.61 7.82 -2.38 -0.02 0.59 16 36 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -78.04 317.64 5.52 -72.52 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: 1.18 Total: 0.59 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 3.88 Total: -4.20 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.29 Total: -55.83 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -1.89 Total: -64.35 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.05 Total: 51.26 kcal Total: -78.04 5.52 -72.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324492698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.158 kcal (2) G-P(sol) polarization free energy of solvation -78.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds