Wall clock time and date at job start Mon Mar 30 2020 00:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00491 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00513 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00159 * 3 2 1 7 7 C 1.37873 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.42899 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46889 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47458 * 65.00274 * 12 11 10 14 14 C 1.34222 * 117.00184 * 180.02562 * 13 12 11 15 15 O 1.20829 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00215 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47287 * 179.97438 * 16 14 13 18 18 H 1.08995 * 110.75148 * 57.01748 * 17 16 14 19 19 C 1.54263 * 110.84486 * 293.54729 * 17 16 14 20 20 O 1.45377 * 106.62911 * 226.61792 * 19 17 16 21 21 C 1.34003 * 111.49149 * 357.72769 * 20 19 17 22 22 O 1.20830 * 125.69427 * 199.68855 * 21 20 19 23 23 C 1.51657 * 108.60688 * 19.65968 * 21 20 19 24 24 H 0.96992 * 120.00510 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 26 26 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 27 27 H 1.08997 * 109.47442 * 300.00036 * 11 10 9 28 28 H 1.08997 * 109.47171 * 60.00232 * 11 10 9 29 29 H 1.09002 * 109.46929 * 185.00104 * 12 11 10 30 30 H 1.09002 * 109.46948 * 304.99600 * 12 11 10 31 31 H 1.08995 * 109.47124 * 300.00373 * 16 14 13 32 32 H 1.09004 * 109.46747 * 59.99773 * 16 14 13 33 33 H 1.09000 * 110.02915 * 345.90408 * 19 17 16 34 34 H 1.08995 * 110.03009 * 107.27664 * 19 17 16 35 35 H 1.09004 * 110.71145 * 213.09029 * 23 21 20 36 36 H 1.08998 * 110.71766 * 89.84749 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 8 3.9880 -2.5412 -0.0010 11 6 5.4125 -2.6539 -0.0021 12 6 5.8071 -4.1321 -0.0025 13 8 5.3721 -4.7489 -1.2429 14 6 5.6429 -6.0538 -1.4024 15 8 6.2246 -6.6606 -0.5344 16 6 5.2214 -6.7622 -2.6639 17 6 5.6483 -8.2297 -2.5918 18 1 5.2272 -8.7115 -1.7094 19 6 7.1858 -8.3554 -2.6048 20 8 7.5100 -9.3950 -3.5679 21 6 6.4042 -9.9402 -4.0928 22 8 6.3403 -11.0144 -4.6423 23 6 5.2461 -8.9842 -3.8813 24 1 -0.4850 0.8399 0.0004 25 1 3.8752 -0.6801 0.8888 26 1 3.8745 -0.6799 -0.8912 27 1 5.8146 -2.1706 -0.8925 28 1 5.8160 -2.1700 0.8874 29 1 6.8900 -4.2191 0.0862 30 1 5.3320 -4.6352 0.8397 31 1 4.1381 -6.7033 -2.7691 32 1 5.6961 -6.2878 -3.5229 33 1 7.6350 -7.4105 -2.9103 34 1 7.5457 -8.6369 -1.6153 35 1 4.3158 -9.5324 -3.7327 36 1 5.1579 -8.2937 -4.7201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324492699.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:18 Heat of formation + Delta-G solvation = -218.954772 kcal Electronic energy + Delta-G solvation = -20208.927861 eV Core-core repulsion = 16658.721782 eV Total energy + Delta-G solvation = -3550.206079 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.48299 -40.44058 -37.94474 -37.35770 -36.34810 -34.73015 -32.76800 -30.71295 -29.44702 -27.94865 -27.46406 -23.24903 -22.05504 -21.89584 -21.71824 -20.54648 -18.06161 -17.70300 -17.14435 -17.06976 -16.70008 -16.49293 -16.24705 -15.59661 -15.02969 -14.67842 -14.45607 -14.09384 -14.01213 -13.43860 -13.39645 -12.94883 -12.65497 -12.48816 -12.42386 -11.94141 -11.80770 -11.69095 -11.26300 -10.97312 -10.89220 -10.78147 -10.68601 -10.62567 -10.40444 -9.94078 -9.28341 -8.99285 -8.58427 -6.18510 -4.18401 1.67779 2.02315 2.49079 2.86386 3.18958 3.26179 3.26683 3.49501 3.72344 4.06623 4.18267 4.28426 4.36761 4.54928 4.75454 4.83060 4.95097 5.01502 5.10320 5.12523 5.14859 5.26201 5.28795 5.48449 5.58283 5.68507 5.84764 6.37750 6.41710 6.47443 6.88745 7.08793 7.49980 7.59350 7.86949 8.55628 8.92075 9.39913 10.94425 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.037519 B = 0.002820 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.100029 B = 9925.161681 C =10382.862821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.376 6.376 11 C 0.056 3.944 12 C 0.075 3.925 13 O -0.339 6.339 14 C 0.460 3.540 15 O -0.516 6.516 16 C -0.108 4.108 17 C -0.112 4.112 18 H 0.111 0.889 19 C 0.063 3.937 20 O -0.351 6.351 21 C 0.487 3.513 22 O -0.456 6.456 23 C -0.184 4.184 24 H 0.267 0.733 25 H 0.004 0.996 26 H 0.001 0.999 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.131 -12.668 -5.626 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.295 6.295 11 C -0.021 4.021 12 C 0.001 3.999 13 O -0.255 6.255 14 C 0.304 3.696 15 O -0.406 6.406 16 C -0.145 4.145 17 C -0.130 4.130 18 H 0.129 0.871 19 C -0.011 4.011 20 O -0.268 6.268 21 C 0.327 3.673 22 O -0.340 6.340 23 C -0.222 4.222 24 H 0.077 0.923 25 H 0.022 0.978 26 H 0.019 0.981 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.197 -13.395 -5.636 20.316 hybrid contribution 0.456 1.406 0.240 1.497 sum 14.654 -11.990 -5.396 19.688 Atomic orbital electron populations 1.69867 1.06071 1.27197 1.50079 1.24771 0.94822 0.98783 0.94571 0.86843 0.80306 0.83725 0.78814 1.19862 1.20721 1.19122 1.20864 0.88157 0.95374 1.51516 0.89936 1.20641 0.96345 0.79160 0.94502 1.87972 1.16593 1.29867 1.95095 1.22407 0.86206 0.92802 1.00714 1.23213 0.99151 0.93219 0.84309 1.86594 1.73286 1.23967 1.41606 1.23517 0.76018 0.81319 0.88791 1.90661 1.39229 1.67008 1.43665 1.21412 1.05697 0.92591 0.94820 1.22332 0.95863 0.95486 0.99352 0.87062 1.24113 0.94944 0.89924 0.92133 1.86792 1.34865 1.50526 1.54631 1.23111 0.83871 0.85102 0.75173 1.90738 1.83639 1.19545 1.40040 1.23161 1.00015 0.99454 0.99549 0.92270 0.97815 0.98139 0.93009 0.91729 0.90179 0.90199 0.85949 0.86801 0.88658 0.87556 0.86452 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 7 C -0.52 -15.08 9.99 -34.44 -0.34 -15.43 16 8 H 0.08 2.62 8.06 -52.48 -0.42 2.20 16 9 C 0.17 4.10 4.76 36.01 0.17 4.27 16 10 O -0.38 -8.30 10.30 -38.80 -0.40 -8.70 16 11 C 0.06 0.89 6.33 37.16 0.24 1.12 16 12 C 0.07 1.00 5.84 37.16 0.22 1.21 16 13 O -0.34 -4.63 10.19 -42.00 -0.43 -5.06 16 14 C 0.46 5.01 7.73 36.01 0.28 5.29 16 15 O -0.52 -6.44 14.82 -18.75 -0.28 -6.72 16 16 C -0.11 -0.70 5.09 -27.88 -0.14 -0.84 16 17 C -0.11 -0.69 2.71 -89.05 -0.24 -0.93 16 18 H 0.11 0.72 8.05 -51.93 -0.42 0.30 16 19 C 0.06 0.45 6.47 37.82 0.24 0.69 16 20 O -0.35 -3.42 10.95 -38.28 -0.42 -3.83 16 21 C 0.49 4.75 8.62 36.48 0.31 5.06 16 22 O -0.46 -6.13 18.00 -18.37 -0.33 -6.46 16 23 C -0.18 -1.03 6.51 -26.51 -0.17 -1.21 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 26 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.85 8.13 -51.93 -0.42 0.42 16 30 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 31 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.10 0.57 7.72 -51.93 -0.40 0.17 16 34 H 0.11 0.78 7.99 -51.93 -0.41 0.36 16 35 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.12 0.46 7.91 -51.93 -0.41 0.05 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -35.18 315.70 -5.49 -40.67 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: -4.96 Total: -5.69 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 0.46 Total: 1.23 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.86 Total: -30.78 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.18 -5.49 -40.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324492699.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.288 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds