Wall clock time and date at job start Mon Mar 30 2020 00:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00491 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00513 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00159 * 3 2 1 7 7 C 1.37873 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.42899 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46889 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47458 * 65.00274 * 12 11 10 14 14 C 1.34222 * 117.00184 * 180.02562 * 13 12 11 15 15 O 1.20829 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00215 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47287 * 179.97438 * 16 14 13 18 18 H 1.08995 * 110.75148 * 57.01748 * 17 16 14 19 19 C 1.54263 * 110.84486 * 293.54729 * 17 16 14 20 20 O 1.45377 * 106.62911 * 226.61792 * 19 17 16 21 21 C 1.34003 * 111.49149 * 357.72769 * 20 19 17 22 22 O 1.20830 * 125.69427 * 199.68855 * 21 20 19 23 23 C 1.51657 * 108.60688 * 19.65968 * 21 20 19 24 24 H 0.96992 * 120.00510 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 26 26 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 27 27 H 1.08997 * 109.47442 * 300.00036 * 11 10 9 28 28 H 1.08997 * 109.47171 * 60.00232 * 11 10 9 29 29 H 1.09002 * 109.46929 * 185.00104 * 12 11 10 30 30 H 1.09002 * 109.46948 * 304.99600 * 12 11 10 31 31 H 1.08995 * 109.47124 * 300.00373 * 16 14 13 32 32 H 1.09004 * 109.46747 * 59.99773 * 16 14 13 33 33 H 1.09000 * 110.02915 * 345.90408 * 19 17 16 34 34 H 1.08995 * 110.03009 * 107.27664 * 19 17 16 35 35 H 1.09004 * 110.71145 * 213.09029 * 23 21 20 36 36 H 1.08998 * 110.71766 * 89.84749 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 8 3.9880 -2.5412 -0.0010 11 6 5.4125 -2.6539 -0.0021 12 6 5.8071 -4.1321 -0.0025 13 8 5.3721 -4.7489 -1.2429 14 6 5.6429 -6.0538 -1.4024 15 8 6.2246 -6.6606 -0.5344 16 6 5.2214 -6.7622 -2.6639 17 6 5.6483 -8.2297 -2.5918 18 1 5.2272 -8.7115 -1.7094 19 6 7.1858 -8.3554 -2.6048 20 8 7.5100 -9.3950 -3.5679 21 6 6.4042 -9.9402 -4.0928 22 8 6.3403 -11.0144 -4.6423 23 6 5.2461 -8.9842 -3.8813 24 1 -0.4850 0.8399 0.0004 25 1 3.8752 -0.6801 0.8888 26 1 3.8745 -0.6799 -0.8912 27 1 5.8146 -2.1706 -0.8925 28 1 5.8160 -2.1700 0.8874 29 1 6.8900 -4.2191 0.0862 30 1 5.3320 -4.6352 0.8397 31 1 4.1381 -6.7033 -2.7691 32 1 5.6961 -6.2878 -3.5229 33 1 7.6350 -7.4105 -2.9103 34 1 7.5457 -8.6369 -1.6153 35 1 4.3158 -9.5324 -3.7327 36 1 5.1579 -8.2937 -4.7201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324492699.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:17 Heat of formation + Delta-G solvation = -243.035736 kcal Electronic energy + Delta-G solvation = -20209.972090 eV Core-core repulsion = 16658.721782 eV Total energy + Delta-G solvation = -3551.250308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.18975 -41.32305 -38.91999 -38.61885 -37.47647 -35.36534 -34.87797 -31.95906 -30.26825 -29.46482 -28.34338 -24.28231 -23.91951 -22.84313 -22.42984 -21.27252 -19.09464 -18.85456 -18.46490 -17.90658 -17.80409 -17.32486 -17.15327 -16.95058 -16.45559 -16.22477 -15.49142 -15.01311 -14.71654 -14.62011 -14.47811 -14.16511 -13.98474 -13.47170 -13.30506 -13.04468 -12.95439 -12.62813 -12.53091 -12.26328 -12.21847 -11.84486 -11.68123 -11.59541 -11.51221 -11.33489 -11.19146 -10.91897 -10.38892 -8.36015 -6.44432 0.94811 1.19871 1.35944 1.39038 1.49570 1.68597 2.21357 2.30991 2.91483 2.96712 2.98279 3.16586 3.52990 3.61268 3.89712 3.96381 4.14955 4.20910 4.39354 4.42504 4.47360 4.52512 4.59132 4.64007 4.68072 4.77016 4.81778 5.00586 5.01858 5.44188 5.50495 5.75604 5.92501 6.35439 6.59579 6.70011 6.75269 7.20030 8.81086 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.037519 B = 0.002820 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.100029 B = 9925.161681 C =10382.862821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.241 1.241 7 C -0.547 4.547 8 H 0.029 0.971 9 C 0.178 3.822 10 O -0.406 6.406 11 C 0.047 3.953 12 C 0.075 3.925 13 O -0.360 6.360 14 C 0.457 3.543 15 O -0.536 6.536 16 C -0.100 4.100 17 C -0.104 4.104 18 H 0.107 0.893 19 C 0.060 3.940 20 O -0.370 6.370 21 C 0.483 3.517 22 O -0.504 6.504 23 C -0.167 4.167 24 H 0.273 0.727 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.804 -10.983 -6.156 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.165 1.165 7 C -0.585 4.585 8 H 0.047 0.953 9 C 0.103 3.897 10 O -0.326 6.326 11 C -0.029 4.029 12 C 0.002 3.998 13 O -0.276 6.276 14 C 0.302 3.698 15 O -0.427 6.427 16 C -0.137 4.137 17 C -0.122 4.122 18 H 0.125 0.875 19 C -0.013 4.013 20 O -0.287 6.287 21 C 0.326 3.674 22 O -0.391 6.391 23 C -0.204 4.204 24 H 0.082 0.918 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.894 -11.723 -6.156 20.687 hybrid contribution -0.055 0.765 0.437 0.882 sum 15.840 -10.959 -5.719 20.092 Atomic orbital electron populations 1.70032 1.08360 1.28818 1.51068 1.25871 0.95802 1.03526 0.93450 0.85592 0.79518 0.77289 0.79833 1.18317 1.20181 1.16471 1.21178 0.91126 0.93785 1.52398 0.95267 1.20353 0.93189 0.80707 0.95453 1.87913 1.20777 1.28567 1.95375 1.22777 0.82722 0.94887 1.02510 1.23188 1.00769 0.91723 0.84129 1.86591 1.73922 1.25527 1.41549 1.24330 0.75288 0.80390 0.89823 1.90656 1.40230 1.67025 1.44747 1.21544 1.06731 0.92021 0.93417 1.22258 0.95018 0.95434 0.99533 0.87501 1.24251 0.95872 0.89799 0.91391 1.86761 1.35812 1.51141 1.54970 1.23765 0.84888 0.84847 0.73861 1.90708 1.84493 1.21707 1.42172 1.23149 0.98522 0.98710 1.00048 0.91814 0.96560 0.96657 0.91490 0.89508 0.87026 0.91503 0.84531 0.83970 0.87128 0.88165 0.85048 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 2 C 0.01 0.66 5.47 84.65 0.46 1.12 16 3 Si 0.96 41.52 27.47 68.60 1.88 43.40 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 7 C -0.55 -32.32 9.99 25.60 0.26 -32.07 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 9 C 0.18 8.44 4.76 71.24 0.34 8.78 16 10 O -0.41 -17.67 10.30 -145.57 -1.50 -19.17 16 11 C 0.05 1.39 6.33 71.98 0.46 1.84 16 12 C 0.08 1.88 5.84 71.98 0.42 2.30 16 13 O -0.36 -9.21 10.19 -48.70 -0.50 -9.71 16 14 C 0.46 9.09 7.73 71.24 0.55 9.64 16 15 O -0.54 -12.65 14.82 21.95 0.33 -12.32 16 16 C -0.10 -1.01 5.09 29.85 0.15 -0.86 16 17 C -0.10 -1.05 2.71 -9.78 -0.03 -1.07 16 18 H 0.11 1.21 8.05 -2.39 -0.02 1.19 16 19 C 0.06 0.77 6.47 72.41 0.47 1.24 16 20 O -0.37 -6.94 10.95 -49.62 -0.54 -7.48 16 21 C 0.48 9.09 8.62 71.54 0.62 9.71 16 22 O -0.50 -13.75 18.00 21.59 0.39 -13.37 16 23 C -0.17 -1.47 6.51 30.74 0.20 -1.27 16 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.02 0.74 7.20 -2.38 -0.02 0.72 16 26 H 0.02 0.69 7.57 -2.39 -0.02 0.67 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.11 2.06 8.13 -2.39 -0.02 2.04 16 30 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 31 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.14 0.69 8.10 -2.38 -0.02 0.67 16 33 H 0.11 1.06 7.72 -2.39 -0.02 1.05 16 34 H 0.10 1.40 7.99 -2.39 -0.02 1.38 16 35 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.15 0.56 7.91 -2.39 -0.02 0.54 16 Total: -1.00 -79.68 315.70 5.28 -74.41 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.02 Total: 2.76 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 3.90 Total: -0.65 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.30 Total: -57.88 kcal Atomic # 8 Polarization: -60.22 SS G_CDS: -1.82 Total: -62.05 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.40 kcal Total: -79.68 5.28 -74.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324492699.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.629 kcal (2) G-P(sol) polarization free energy of solvation -79.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds