Wall clock time and date at job start Mon Mar 30 2020 01:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 102.99842 * 2 1 4 4 C 1.53008 * 109.46987 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46920 * 59.99764 * 4 3 2 6 6 O 1.42898 * 109.47027 * 300.00082 * 4 3 2 7 7 C 1.53000 * 109.47236 * 179.97438 * 4 3 2 8 8 N 1.46497 * 109.47224 * 185.00110 * 7 4 3 9 9 C 1.35313 * 125.86667 * 125.29209 * 8 7 4 10 10 C 1.35349 * 106.17218 * 180.18574 * 9 8 7 11 11 C 1.50697 * 126.75364 * 179.85517 * 10 9 8 12 12 N 1.46499 * 109.47276 * 94.71254 * 11 10 9 13 13 C 1.36935 * 119.99938 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 11 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47028 * 60.00888 * 17 15 13 19 19 H 1.48503 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47412 * 300.00497 * 17 15 13 21 21 N 1.33776 * 106.49865 * 359.59278 * 10 9 8 22 22 N 1.28634 * 108.88055 * 0.26390 * 21 10 9 23 23 H 1.08999 * 109.47120 * 59.99684 * 1 2 3 24 24 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46999 * 299.99835 * 1 2 3 26 26 H 1.08994 * 109.47311 * 60.00152 * 3 2 1 27 27 H 1.09004 * 109.47451 * 299.99771 * 3 2 1 28 28 H 0.96701 * 113.99673 * 299.99824 * 6 4 3 29 29 H 1.08997 * 109.46709 * 64.99831 * 7 4 3 30 30 H 1.09004 * 109.46796 * 305.00347 * 7 4 3 31 31 H 1.08001 * 126.91913 * 0.04070 * 9 8 7 32 32 H 1.09004 * 109.47205 * 334.71228 * 11 10 9 33 33 H 1.09005 * 109.47240 * 214.71438 * 11 10 9 34 34 H 0.96999 * 119.99984 * 0.02562 * 12 11 10 35 35 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1609 1.4704 -0.8909 6 8 4.2921 1.3242 1.1658 7 6 4.0866 3.4307 -0.0013 8 7 5.5370 3.5970 -0.1223 9 6 6.1750 4.3335 -1.0612 10 6 7.4980 4.2058 -0.8057 11 6 8.6300 4.8356 -1.5757 12 7 9.0189 6.0926 -0.9315 13 6 10.0339 6.8462 -1.4579 14 1 10.5506 6.5119 -2.3453 15 6 10.4021 8.0376 -0.8478 16 7 9.7759 8.4425 0.2367 17 14 11.7871 9.0653 -1.5654 18 1 11.4392 9.4652 -2.9526 19 1 11.9839 10.2801 -0.7342 20 1 13.0394 8.2675 -1.5796 21 7 7.6030 3.4152 0.2684 22 7 6.4233 3.0714 0.6490 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8032 2.2371 0.8899 27 1 1.8031 2.2372 -0.8900 28 1 3.9634 1.6929 1.9971 29 1 3.7454 3.8827 0.9300 30 1 3.5936 3.9170 -0.8431 31 1 5.7202 4.9060 -1.8561 32 1 8.3074 5.0356 -2.5975 33 1 9.4821 4.1559 -1.5901 34 1 8.5575 6.3910 -0.1322 35 1 10.0334 9.2748 0.6632 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336895130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:16 Heat of formation + Delta-G solvation = 66.206003 kcal Electronic energy + Delta-G solvation = -18052.440682 eV Core-core repulsion = 15021.938475 eV Total energy + Delta-G solvation = -3030.502207 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.88987 -38.28376 -35.03516 -33.98925 -31.90500 -31.52094 -29.84022 -29.41817 -27.51267 -25.71295 -23.02830 -22.69782 -21.53880 -20.54001 -17.93328 -17.13295 -16.93795 -16.33856 -16.01871 -15.77581 -14.96546 -14.52483 -14.51404 -14.22775 -14.11312 -13.70897 -13.29385 -13.06991 -12.67575 -12.64706 -12.44078 -11.88133 -11.79560 -11.18562 -10.85133 -10.76640 -10.69823 -10.41665 -10.36190 -10.09481 -9.79762 -9.63424 -8.84622 -8.76308 -8.10418 -6.88472 -5.71040 -3.00425 1.07958 1.91414 2.09141 2.43218 3.00202 3.48316 3.52486 3.53887 3.82460 3.98711 4.25791 4.33769 4.42446 4.63557 4.65371 4.66713 4.73139 4.83722 4.90378 5.21455 5.31245 5.37366 5.53054 5.67845 5.88982 6.21671 6.46464 6.71502 6.80052 6.84998 7.30476 7.73506 8.46444 8.94319 9.57995 10.14290 10.50384 11.51803 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.064008 B = 0.002797 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.337250 B =10008.557048 C =10058.110993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.223 6.223 3 C -0.128 4.128 4 C 0.117 3.883 5 H 0.114 0.886 6 O -0.525 6.525 7 C 0.091 3.909 8 N -0.300 5.300 9 C -0.052 4.052 10 C -0.005 4.005 11 C 0.232 3.768 12 N -0.726 5.726 13 C -0.239 4.239 14 H 0.073 0.927 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.910 3.090 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.285 1.285 21 N -0.258 5.258 22 N -0.071 5.071 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.376 0.624 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.187 0.813 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.385 0.615 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.026 -13.533 -1.903 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.003 5.997 3 C -0.278 4.278 4 C 0.055 3.945 5 H 0.131 0.869 6 O -0.329 6.329 7 C -0.034 4.034 8 N -0.095 5.095 9 C -0.201 4.201 10 C -0.142 4.142 11 C 0.103 3.897 12 N -0.371 5.371 13 C -0.370 4.370 14 H 0.091 0.909 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.741 3.259 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.212 1.212 21 N -0.126 5.126 22 N -0.050 5.050 23 H 0.094 0.906 24 H 0.121 0.879 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.224 0.776 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.204 0.796 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.219 0.781 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.686 -15.607 -1.220 26.746 hybrid contribution -1.114 2.937 -0.642 3.206 sum -22.800 -12.669 -1.862 26.150 Atomic orbital electron populations 1.23459 0.95049 1.06714 1.04855 1.87386 1.05898 1.08452 1.97971 1.24178 1.00222 0.97247 1.06112 1.21813 0.89703 0.90826 0.92179 0.86857 1.86811 1.69409 1.61898 1.14808 1.22693 0.75981 0.98813 1.05873 1.47074 1.07962 1.33408 1.21008 1.23397 0.93696 1.03576 0.99469 1.22458 0.94610 1.00247 0.96885 1.18944 0.90108 0.88076 0.92532 1.42303 1.41762 1.20368 1.32625 1.19198 1.09223 1.00649 1.07946 0.90933 1.24763 1.00004 0.98444 0.97799 1.69673 1.43787 1.23626 1.21088 0.86223 0.82070 0.79655 0.77962 1.21261 1.21761 1.21177 1.75145 1.13356 1.12835 1.11238 1.78397 0.92245 1.18019 1.16317 0.90550 0.87902 0.90476 0.89215 0.88718 0.77640 0.88052 0.86864 0.79579 0.94542 0.94331 0.78127 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.61 10.76 101.05 1.09 0.48 16 2 S -0.22 -1.74 22.02 -107.50 -2.37 -4.11 16 3 C -0.13 -0.68 5.64 37.16 0.21 -0.47 16 4 C 0.12 0.92 3.21 -26.73 -0.09 0.83 16 5 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 6 O -0.53 -5.46 11.96 -35.23 -0.42 -5.88 16 7 C 0.09 0.70 6.14 -4.04 -0.02 0.68 16 8 N -0.30 -4.16 3.44 -61.26 -0.21 -4.37 16 9 C -0.05 -0.79 11.50 -17.05 -0.20 -0.98 16 10 C 0.00 -0.09 6.61 -82.78 -0.55 -0.64 16 11 C 0.23 5.02 6.82 -5.20 -0.04 4.98 16 12 N -0.73 -19.36 5.59 -61.08 -0.34 -19.70 16 13 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 14 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 17 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 N -0.26 -5.46 12.41 33.29 0.41 -5.04 16 22 N -0.07 -1.27 12.09 60.35 0.73 -0.54 16 23 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 24 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.38 2.66 9.05 45.56 0.41 3.07 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.11 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.19 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.39 11.06 7.66 -40.82 -0.31 10.75 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -36.87 319.87 -5.61 -42.48 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.09 Total: 5.60 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.16 Total: -2.63 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 1.31 Total: -57.99 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.42 Total: -5.88 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.37 Total: -4.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.87 -5.61 -42.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336895130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.688 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds