Wall clock time and date at job start Mon Mar 30 2020 01:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81398 * 102.99842 * 2 1 4 4 C 1.53008 * 109.46987 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46920 * 59.99764 * 4 3 2 6 6 O 1.42898 * 109.47027 * 300.00082 * 4 3 2 7 7 C 1.53000 * 109.47236 * 179.97438 * 4 3 2 8 8 N 1.46497 * 109.47224 * 185.00110 * 7 4 3 9 9 C 1.35313 * 125.86667 * 125.29209 * 8 7 4 10 10 C 1.35349 * 106.17218 * 180.18574 * 9 8 7 11 11 C 1.50697 * 126.75364 * 179.85517 * 10 9 8 12 12 N 1.46499 * 109.47276 * 94.71254 * 11 10 9 13 13 C 1.36935 * 119.99938 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 11 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47028 * 60.00888 * 17 15 13 19 19 H 1.48503 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47412 * 300.00497 * 17 15 13 21 21 N 1.33776 * 106.49865 * 359.59278 * 10 9 8 22 22 N 1.28634 * 108.88055 * 0.26390 * 21 10 9 23 23 H 1.08999 * 109.47120 * 59.99684 * 1 2 3 24 24 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46999 * 299.99835 * 1 2 3 26 26 H 1.08994 * 109.47311 * 60.00152 * 3 2 1 27 27 H 1.09004 * 109.47451 * 299.99771 * 3 2 1 28 28 H 0.96701 * 113.99673 * 299.99824 * 6 4 3 29 29 H 1.08997 * 109.46709 * 64.99831 * 7 4 3 30 30 H 1.09004 * 109.46796 * 305.00347 * 7 4 3 31 31 H 1.08001 * 126.91913 * 0.04070 * 9 8 7 32 32 H 1.09004 * 109.47205 * 334.71228 * 11 10 9 33 33 H 1.09005 * 109.47240 * 214.71438 * 11 10 9 34 34 H 0.96999 * 119.99984 * 0.02562 * 12 11 10 35 35 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1609 1.4704 -0.8909 6 8 4.2921 1.3242 1.1658 7 6 4.0866 3.4307 -0.0013 8 7 5.5370 3.5970 -0.1223 9 6 6.1750 4.3335 -1.0612 10 6 7.4980 4.2058 -0.8057 11 6 8.6300 4.8356 -1.5757 12 7 9.0189 6.0926 -0.9315 13 6 10.0339 6.8462 -1.4579 14 1 10.5506 6.5119 -2.3453 15 6 10.4021 8.0376 -0.8478 16 7 9.7759 8.4425 0.2367 17 14 11.7871 9.0653 -1.5654 18 1 11.4392 9.4652 -2.9526 19 1 11.9839 10.2801 -0.7342 20 1 13.0394 8.2675 -1.5796 21 7 7.6030 3.4152 0.2684 22 7 6.4233 3.0714 0.6490 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8032 2.2371 0.8899 27 1 1.8031 2.2372 -0.8900 28 1 3.9634 1.6929 1.9971 29 1 3.7454 3.8827 0.9300 30 1 3.5936 3.9170 -0.8431 31 1 5.7202 4.9060 -1.8561 32 1 8.3074 5.0356 -2.5975 33 1 9.4821 4.1559 -1.5901 34 1 8.5575 6.3910 -0.1322 35 1 10.0334 9.2748 0.6632 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336895130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:15 Heat of formation + Delta-G solvation = 36.377941 kcal Electronic energy + Delta-G solvation = -18053.734123 eV Core-core repulsion = 15021.938475 eV Total energy + Delta-G solvation = -3031.795649 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.15740 -38.99657 -36.80439 -35.23357 -33.64370 -32.33982 -31.54554 -29.79595 -28.33493 -27.47719 -24.76687 -23.72155 -22.69935 -21.81693 -19.38348 -18.67291 -17.83096 -17.11109 -16.86110 -16.61774 -16.46297 -15.82575 -15.60627 -15.45891 -15.02845 -14.61244 -14.52512 -14.28418 -13.87394 -13.50724 -13.12397 -13.06590 -12.99601 -12.71930 -12.53571 -12.36950 -12.10988 -11.87493 -11.73351 -11.47666 -10.94260 -10.88917 -10.76745 -10.13388 -9.01246 -8.67171 -7.92534 -5.22947 0.56667 0.76823 1.47783 1.51186 1.54535 1.56259 1.61371 1.68209 2.60539 3.23900 3.38625 3.41553 3.47743 3.74922 3.81290 3.96597 4.08935 4.22990 4.25722 4.31645 4.35381 4.36113 4.50958 4.62716 4.78084 4.89605 4.90641 5.18650 5.22296 5.51244 5.74281 6.27194 6.76671 7.33843 7.61367 8.05417 8.31817 9.31343 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.064008 B = 0.002797 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.337250 B =10008.557048 C =10058.110993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.305 6.305 3 C -0.104 4.104 4 C 0.121 3.879 5 H 0.091 0.909 6 O -0.556 6.556 7 C 0.080 3.920 8 N -0.283 5.283 9 C -0.026 4.026 10 C -0.043 4.043 11 C 0.236 3.764 12 N -0.739 5.739 13 C -0.245 4.245 14 H 0.084 0.916 15 C -0.079 4.079 16 N -0.974 5.974 17 Si 0.981 3.019 18 H -0.271 1.271 19 H -0.297 1.297 20 H -0.280 1.280 21 N -0.310 5.310 22 N -0.088 5.088 23 H 0.089 0.911 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.387 0.613 29 H 0.125 0.875 30 H 0.158 0.842 31 H 0.230 0.770 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.371 0.629 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.197 -12.799 -3.295 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.080 6.080 3 C -0.253 4.253 4 C 0.059 3.941 5 H 0.109 0.891 6 O -0.363 6.363 7 C -0.041 4.041 8 N -0.077 5.077 9 C -0.177 4.177 10 C -0.181 4.181 11 C 0.108 3.892 12 N -0.381 5.381 13 C -0.376 4.376 14 H 0.102 0.898 15 C -0.271 4.271 16 N -0.624 5.624 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.223 1.223 20 H -0.206 1.206 21 N -0.178 5.178 22 N -0.067 5.067 23 H 0.108 0.892 24 H 0.123 0.877 25 H 0.107 0.893 26 H 0.130 0.870 27 H 0.138 0.862 28 H 0.237 0.763 29 H 0.142 0.858 30 H 0.176 0.824 31 H 0.247 0.753 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.202 0.798 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.890 -14.928 -2.627 28.292 hybrid contribution -0.591 2.600 -0.222 2.675 sum -24.481 -12.328 -2.848 27.558 Atomic orbital electron populations 1.23449 0.91462 1.07292 1.06023 1.87698 1.09997 1.12075 1.98211 1.24048 0.98026 0.94847 1.08387 1.21744 0.91312 0.90429 0.90590 0.89066 1.86776 1.70400 1.62969 1.16121 1.23303 0.72475 0.99235 1.09126 1.47509 1.09782 1.31222 1.19211 1.23875 0.92264 1.02089 0.99465 1.22299 0.95958 1.02041 0.97783 1.18950 0.90728 0.85871 0.93657 1.42508 1.41412 1.21858 1.32361 1.19675 1.09298 1.00727 1.07931 0.89832 1.25664 1.02891 1.00034 0.98477 1.69851 1.45743 1.24013 1.22817 0.85108 0.78914 0.77498 0.77598 1.19636 1.22336 1.20590 1.75065 1.15409 1.14579 1.12722 1.78279 0.92209 1.18893 1.17346 0.89245 0.87717 0.89327 0.87015 0.86216 0.76343 0.85750 0.82448 0.75330 0.91922 0.95758 0.79836 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.76 113.37 1.22 0.42 16 2 S -0.31 -4.43 22.02 -56.49 -1.24 -5.67 16 3 C -0.10 -0.78 5.64 71.98 0.41 -0.38 16 4 C 0.12 1.64 3.21 30.60 0.10 1.74 16 5 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 6 O -0.56 -11.22 11.96 -148.98 -1.78 -13.00 16 7 C 0.08 0.94 6.14 86.38 0.53 1.47 16 8 N -0.28 -7.22 3.44 -347.74 -1.20 -8.42 16 9 C -0.03 -0.72 11.50 83.49 0.96 0.24 16 10 C -0.04 -1.66 6.61 41.59 0.28 -1.38 16 11 C 0.24 10.17 6.82 85.63 0.58 10.75 16 12 N -0.74 -39.72 5.59 -347.17 -1.94 -41.66 16 13 C -0.24 -14.01 9.99 84.04 0.84 -13.17 16 14 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 15 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 16 N -0.97 -61.51 13.06 21.65 0.28 -61.23 16 17 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 N -0.31 -13.39 12.41 -48.60 -0.60 -14.00 16 22 N -0.09 -3.15 12.09 37.02 0.45 -2.71 16 23 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.39 5.16 9.05 -74.06 -0.67 4.49 16 29 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.16 0.51 8.07 -2.39 -0.02 0.49 16 31 H 0.23 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.37 21.73 7.66 -92.71 -0.71 21.02 16 35 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -83.34 319.87 1.10 -82.25 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -0.27 Total: 20.12 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.38 Total: -4.48 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -3.01 Total: -128.01 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.78 Total: -13.00 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.24 Total: -5.67 kcal Total: -83.34 1.10 -82.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336895130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.623 kcal (2) G-P(sol) polarization free energy of solvation -83.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds