Wall clock time and date at job start Mon Mar 30 2020 01:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81393 * 102.99693 * 2 1 4 4 C 1.53002 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47644 * 305.00282 * 4 3 2 6 6 O 1.42903 * 109.47042 * 65.00353 * 4 3 2 7 7 C 1.53005 * 109.47300 * 184.99783 * 4 3 2 8 8 N 1.46499 * 109.47396 * 175.00109 * 7 4 3 9 9 C 1.35308 * 125.86944 * 124.99861 * 8 7 4 10 10 C 1.35347 * 106.17713 * 180.02562 * 9 8 7 11 11 C 1.50700 * 126.75515 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47207 * 94.99691 * 11 10 9 13 13 C 1.36935 * 120.00353 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99991 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00217 * 180.02562 * 13 12 11 16 16 N 1.31626 * 120.00287 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99886 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47214 * 90.00052 * 17 15 13 19 19 H 1.48507 * 109.46914 * 209.99701 * 17 15 13 20 20 H 1.48490 * 109.47014 * 329.99453 * 17 15 13 21 21 N 1.33774 * 106.49812 * 0.02562 * 10 9 8 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 10 9 23 23 H 1.08997 * 109.47497 * 299.99670 * 1 2 3 24 24 H 1.08999 * 109.46904 * 60.00370 * 1 2 3 25 25 H 1.09000 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47520 * 60.00097 * 3 2 1 27 27 H 1.08998 * 109.47280 * 299.99856 * 3 2 1 28 28 H 0.96703 * 114.00307 * 59.99474 * 6 4 3 29 29 H 1.09001 * 109.46828 * 55.00574 * 7 4 3 30 30 H 1.08993 * 109.47081 * 295.00464 * 7 4 3 31 31 H 1.07997 * 126.91159 * 0.02959 * 9 8 7 32 32 H 1.09000 * 109.47363 * 214.99779 * 11 10 9 33 33 H 1.09004 * 109.47108 * 335.00124 * 11 10 9 34 34 H 0.97004 * 119.99915 * 0.02562 * 12 11 10 35 35 H 0.96992 * 119.99965 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1695 1.3953 0.8426 6 8 4.2803 1.4278 -1.2202 7 6 4.0870 3.4253 0.1263 8 7 5.5387 3.5813 0.2470 9 6 6.3221 4.3494 -0.5449 10 6 7.5858 4.2002 -0.0837 11 6 8.8286 4.8536 -0.6312 12 7 9.1125 6.0749 0.1265 13 6 10.2009 6.8417 -0.1935 14 1 10.8498 6.5465 -1.0048 15 6 10.4702 7.9986 0.5247 16 7 11.5167 8.7355 0.2175 17 14 9.3482 8.5090 1.9284 18 1 9.8348 7.9061 3.1953 19 1 9.3511 9.9889 2.0514 20 1 7.9670 8.0378 1.6543 21 7 7.5147 3.3587 0.9537 22 7 6.2883 3.0095 1.1233 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8031 2.2371 0.8900 27 1 1.8031 2.2371 -0.8900 28 1 3.9436 1.8670 -2.0132 29 1 3.6026 3.8371 1.0117 30 1 3.7370 3.9557 -0.7592 31 1 6.0032 4.9591 -1.3773 32 1 9.6699 4.1665 -0.5415 33 1 8.6748 5.1047 -1.6807 34 1 8.5295 6.3403 0.8549 35 1 11.7050 9.5436 0.7196 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336895132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:17 Heat of formation + Delta-G solvation = 37.267103 kcal Electronic energy + Delta-G solvation = -18133.524562 eV Core-core repulsion = 15101.767470 eV Total energy + Delta-G solvation = -3031.757092 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.22862 -39.09381 -37.00397 -35.30610 -33.79163 -32.44374 -31.92135 -29.82038 -28.43078 -27.71166 -24.42299 -23.76253 -22.80856 -21.83502 -19.91389 -18.76681 -17.70950 -17.39896 -17.01444 -16.63601 -16.39129 -16.01324 -15.75617 -15.46061 -14.97076 -14.63875 -14.55403 -14.40092 -14.01396 -13.64294 -13.41298 -13.27014 -12.97876 -12.91069 -12.65663 -12.37699 -12.11530 -11.82135 -11.79628 -11.66705 -11.02394 -10.91608 -10.81261 -10.20755 -9.31929 -8.69929 -8.02243 -5.35801 0.52487 0.73934 1.34452 1.40723 1.43537 1.45946 1.49810 1.65837 2.47817 3.18047 3.27998 3.30311 3.43025 3.73419 3.76142 3.83338 3.95615 4.06019 4.26138 4.28943 4.33984 4.34616 4.45689 4.53296 4.76836 4.89225 4.89928 5.13270 5.18215 5.68090 5.75543 6.21324 6.71859 7.05685 7.52585 7.80575 8.00883 9.18936 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048774 B = 0.003126 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.939330 B = 8954.720339 C = 9212.802013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.311 6.311 3 C -0.103 4.103 4 C 0.120 3.880 5 H 0.089 0.911 6 O -0.565 6.565 7 C 0.081 3.919 8 N -0.277 5.277 9 C -0.012 4.012 10 C -0.047 4.047 11 C 0.240 3.760 12 N -0.752 5.752 13 C -0.231 4.231 14 H 0.067 0.933 15 C -0.060 4.060 16 N -0.980 5.980 17 Si 0.953 3.047 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.257 1.257 21 N -0.302 5.302 22 N -0.112 5.112 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.392 0.608 29 H 0.130 0.870 30 H 0.158 0.842 31 H 0.234 0.766 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.363 0.637 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.807 -13.498 -3.913 33.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.085 6.085 3 C -0.252 4.252 4 C 0.058 3.942 5 H 0.107 0.893 6 O -0.372 6.372 7 C -0.041 4.041 8 N -0.071 5.071 9 C -0.164 4.164 10 C -0.186 4.186 11 C 0.112 3.888 12 N -0.398 5.398 13 C -0.362 4.362 14 H 0.084 0.916 15 C -0.252 4.252 16 N -0.631 5.631 17 Si 0.781 3.219 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.182 1.182 21 N -0.169 5.169 22 N -0.091 5.091 23 H 0.106 0.894 24 H 0.109 0.891 25 H 0.123 0.877 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.242 0.758 29 H 0.148 0.852 30 H 0.176 0.824 31 H 0.251 0.749 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.195 0.805 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -29.658 -15.707 -2.426 33.647 hybrid contribution -1.157 2.415 -0.175 2.683 sum -30.815 -13.292 -2.601 33.660 Atomic orbital electron populations 1.23445 0.91240 1.07324 1.06071 1.87714 1.10296 1.12293 1.98220 1.24029 0.97944 0.94756 1.08465 1.21753 0.91552 0.91937 0.88945 0.89269 1.86766 1.70473 1.64025 1.15972 1.23315 0.72478 0.99101 1.09179 1.47437 1.10507 1.29138 1.19993 1.23902 0.89751 1.01125 1.01629 1.22253 0.97099 1.01708 0.97524 1.18892 0.89756 0.85590 0.94520 1.42680 1.30902 1.26190 1.40039 1.19060 1.01832 1.02204 1.13089 0.91550 1.25415 0.99519 0.97959 1.02264 1.69863 1.30663 1.17737 1.44809 0.85441 0.79784 0.76969 0.79724 1.21474 1.21525 1.18159 1.75037 1.10719 1.13884 1.17250 1.78125 0.96701 1.19745 1.14541 0.89389 0.89056 0.87732 0.86747 0.86234 0.75755 0.85198 0.82406 0.74926 0.95222 0.91366 0.80491 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.76 113.37 1.22 0.51 16 2 S -0.31 -4.32 22.16 -56.49 -1.25 -5.57 16 3 C -0.10 -0.66 5.60 71.98 0.40 -0.26 16 4 C 0.12 1.46 3.04 30.60 0.09 1.55 16 5 H 0.09 1.77 8.00 -2.39 -0.02 1.76 16 6 O -0.56 -8.91 13.04 -148.98 -1.94 -10.85 16 7 C 0.08 0.75 6.09 86.38 0.53 1.27 16 8 N -0.28 -6.26 3.39 -347.74 -1.18 -7.43 16 9 C -0.01 -0.29 11.50 83.49 0.96 0.67 16 10 C -0.05 -1.66 6.61 41.60 0.28 -1.39 16 11 C 0.24 9.68 6.82 85.63 0.58 10.27 16 12 N -0.75 -36.92 5.40 -347.17 -1.87 -38.80 16 13 C -0.23 -13.44 10.47 84.03 0.88 -12.56 16 14 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 15 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 16 N -0.98 -63.40 13.97 21.65 0.30 -63.10 16 17 Si 0.95 47.11 27.74 68.60 1.90 49.01 16 18 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 19 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 21 N -0.30 -11.97 12.41 -48.60 -0.60 -12.57 16 22 N -0.11 -3.69 12.82 37.02 0.47 -3.22 16 23 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.11 0.35 8.14 -2.39 -0.02 0.34 16 27 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.39 2.41 9.05 -74.06 -0.67 1.74 16 29 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.16 0.01 8.07 -2.39 -0.02 -0.01 16 31 H 0.23 3.35 8.06 -2.91 -0.02 3.32 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.36 17.59 5.52 -92.71 -0.51 17.08 16 35 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -85.42 318.25 1.11 -84.31 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -0.13 Total: 11.28 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.41 Total: -3.07 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -2.88 Total: -125.11 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.94 Total: -10.85 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.90 Total: 49.01 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -1.25 Total: -5.57 kcal Total: -85.42 1.11 -84.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336895132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.577 kcal (2) G-P(sol) polarization free energy of solvation -85.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds