Wall clock time and date at job start Mon Mar 30 2020 01:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30504 * 125.72154 * 2 1 4 4 C 1.34142 * 109.35707 * 180.24933 * 3 2 1 5 5 C 1.34648 * 108.20770 * 359.75693 * 4 3 2 6 6 N 1.35889 * 125.71850 * 179.83757 * 2 1 3 7 7 C 1.39959 * 126.47675 * 0.02562 * 6 2 1 8 8 C 1.39145 * 120.89028 * 244.95263 * 7 6 2 9 9 C 1.38083 * 119.17650 * 180.30132 * 8 7 6 10 10 N 1.31975 * 121.02318 * 359.69889 * 9 8 7 11 11 C 1.31839 * 121.95815 * 0.02870 * 10 9 8 12 12 C 1.38864 * 120.70685 * 359.97438 * 11 10 9 13 13 N 1.39549 * 120.54270 * 179.97438 * 12 11 10 14 14 C 1.34781 * 120.00189 * 24.77241 * 13 12 11 15 15 O 1.21757 * 120.00082 * 5.53825 * 14 13 12 16 16 C 1.46119 * 120.00002 * 185.53728 * 14 13 12 17 17 H 1.07995 * 119.99922 * 354.98377 * 16 14 13 18 18 C 1.40133 * 119.99885 * 174.70052 * 16 14 13 19 19 N 1.30630 * 120.00069 * 5.02252 * 18 16 14 20 20 Si 1.86799 * 120.00080 * 185.02282 * 18 16 14 21 21 H 1.48504 * 109.47111 * 95.00017 * 20 18 16 22 22 H 1.48500 * 109.47085 * 215.00184 * 20 18 16 23 23 H 1.48499 * 109.46901 * 335.00290 * 20 18 16 24 24 H 1.08999 * 109.47483 * 270.16249 * 1 2 3 25 25 H 1.09007 * 109.46590 * 30.16186 * 1 2 3 26 26 H 1.08997 * 109.47194 * 150.15270 * 1 2 3 27 27 H 1.08004 * 125.89540 * 179.77731 * 4 3 2 28 28 H 1.08000 * 126.58216 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.41049 * 0.02562 * 8 7 6 30 30 H 1.08005 * 119.48575 * 179.72642 * 9 8 7 31 31 H 1.07999 * 119.64501 * 180.02562 * 11 10 9 32 32 H 0.97004 * 119.99975 * 204.77108 * 13 12 11 33 33 H 0.96995 * 120.00349 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2690 1.0595 0.0000 4 6 3.5560 0.6816 -0.0055 5 6 3.5994 -0.6642 -0.0037 6 7 2.3003 -1.1033 0.0031 7 6 1.8724 -2.4358 0.0064 8 6 2.1349 -3.2678 1.0904 9 6 1.7017 -4.5784 1.0536 10 7 1.0407 -5.0472 0.0119 11 6 0.7643 -4.2954 -1.0352 12 6 1.1637 -2.9661 -1.0791 13 7 0.8697 -2.1736 -2.1894 14 6 -0.1803 -2.4798 -2.9770 15 8 -0.9316 -3.3857 -2.6650 16 6 -0.4170 -1.7246 -4.2053 17 1 0.1999 -0.8701 -4.4412 18 6 -1.4407 -2.1126 -5.0800 19 7 -2.2458 -3.0874 -4.7517 20 14 -1.6540 -1.2357 -6.7156 21 1 -0.9431 -1.9908 -7.7785 22 1 -3.0989 -1.1538 -7.0486 23 1 -1.0896 0.1345 -6.6199 24 1 -0.3634 0.0029 1.0276 25 1 -0.3633 0.8886 -0.5164 26 1 -0.3633 -0.8913 -0.5114 27 1 4.4101 1.3427 -0.0102 28 1 4.4868 -1.2796 -0.0065 29 1 2.6746 -2.8943 1.9481 30 1 1.9066 -5.2297 1.8904 31 1 0.2206 -4.7176 -1.8674 32 1 1.4211 -1.4022 -2.3944 33 1 -2.9547 -3.3558 -5.3570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338266724.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:47 Heat of formation + Delta-G solvation = 66.391310 kcal Electronic energy + Delta-G solvation = -20567.819931 eV Core-core repulsion = 17401.881808 eV Total energy + Delta-G solvation = -3165.938123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.20163 -39.92689 -37.69015 -34.75522 -33.55392 -32.64455 -31.48208 -30.43688 -29.37717 -26.78252 -26.47372 -23.72519 -23.15541 -21.12056 -20.33012 -19.99528 -18.11455 -17.73830 -16.45452 -16.26802 -15.43464 -14.98176 -14.83535 -14.44188 -14.21669 -13.84087 -13.59216 -13.43056 -12.92104 -12.84487 -12.72807 -12.43494 -12.05697 -11.97453 -11.48647 -11.25689 -10.84916 -10.47003 -10.45186 -10.01505 -9.74829 -9.29219 -9.17076 -9.09072 -8.25027 -8.05320 -7.50142 -6.55891 -5.03719 1.18321 1.46833 2.15403 2.82163 2.97556 3.06093 3.09713 3.23510 3.79907 3.96070 4.15080 4.28321 4.64929 4.83718 4.93503 4.96060 5.20726 5.41187 5.43543 5.49248 5.54868 5.74562 5.87784 5.93826 5.96740 6.17852 6.29007 6.44561 6.85448 6.86361 7.11380 7.30391 7.39635 7.63239 7.89810 8.18979 8.32614 8.64596 8.84216 10.06852 10.33146 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.006763 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.973344 B = 4138.964091 C = 5277.543430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.228 3.772 3 N -0.490 5.490 4 C -0.028 4.028 5 C -0.055 4.055 6 N -0.405 5.405 7 C 0.070 3.930 8 C -0.136 4.136 9 C 0.049 3.951 10 N -0.455 5.455 11 C 0.094 3.906 12 C 0.164 3.836 13 N -0.680 5.680 14 C 0.537 3.463 15 O -0.554 6.554 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.087 3.913 19 N -0.751 5.751 20 Si 0.915 3.085 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.262 1.262 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.172 0.828 29 H 0.132 0.868 30 H 0.155 0.845 31 H 0.193 0.807 32 H 0.396 0.604 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.342 2.567 7.321 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.033 4.033 3 N -0.209 5.209 4 C -0.175 4.175 5 C -0.186 4.186 6 N -0.085 5.085 7 C -0.032 4.032 8 C -0.157 4.157 9 C -0.108 4.108 10 N -0.164 5.164 11 C -0.069 4.069 12 C 0.058 3.942 13 N -0.320 5.320 14 C 0.346 3.654 15 O -0.436 6.436 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.136 4.136 19 N -0.378 5.378 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.186 1.186 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.187 0.813 28 H 0.190 0.810 29 H 0.150 0.850 30 H 0.172 0.828 31 H 0.209 0.791 32 H 0.230 0.770 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.001 1.685 7.374 10.306 hybrid contribution 1.041 0.944 -0.769 1.602 sum 8.042 2.629 6.605 10.733 Atomic orbital electron populations 1.20310 0.84633 1.05192 1.03244 1.23727 0.95776 0.80428 1.03385 1.70286 1.02177 1.27782 1.20667 1.22248 0.94843 0.92506 1.07921 1.22773 0.86747 0.96664 1.12428 1.42733 1.06540 1.04401 1.54848 1.17662 1.07261 0.83241 0.95061 1.21833 1.01884 0.95061 0.96948 1.22434 0.97776 0.92879 0.97663 1.67748 1.10128 1.38131 1.00399 1.23673 0.97751 0.87896 0.97588 1.19262 0.95064 0.92473 0.87437 1.44410 1.32485 1.29880 1.25273 1.18489 0.78167 0.85269 0.83490 1.90607 1.46566 1.33630 1.72785 1.20837 1.17482 1.14816 1.03286 0.90731 1.25751 0.94038 0.94300 0.99487 1.69953 1.11662 1.21502 1.34717 0.86211 0.78328 0.80402 0.81180 1.19464 1.20040 1.18555 0.90514 0.88959 0.89749 0.81255 0.81038 0.84970 0.82815 0.79101 0.76960 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.16 36.01 0.37 -0.85 16 2 C 0.23 3.86 7.22 -154.63 -1.12 2.75 16 3 N -0.49 -8.36 11.24 -10.62 -0.12 -8.48 16 4 C -0.03 -0.40 11.85 -17.81 -0.21 -0.61 16 5 C -0.06 -0.77 11.50 -16.46 -0.19 -0.96 16 6 N -0.40 -6.47 2.39 -57.48 -0.14 -6.60 16 7 C 0.07 1.17 5.49 -83.13 -0.46 0.72 16 8 C -0.14 -1.94 10.02 -39.30 -0.39 -2.33 16 9 C 0.05 0.73 11.17 -17.55 -0.20 0.53 16 10 N -0.46 -8.36 10.35 -13.10 -0.14 -8.49 16 11 C 0.09 1.93 9.90 -17.32 -0.17 1.76 16 12 C 0.16 3.20 5.70 -83.43 -0.48 2.73 16 13 N -0.68 -14.33 4.00 -10.99 -0.04 -14.37 16 14 C 0.54 13.67 7.54 -13.10 -0.10 13.57 16 15 O -0.55 -15.70 12.22 5.14 0.06 -15.64 16 16 C -0.53 -13.57 9.53 -35.71 -0.34 -13.91 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 18 C 0.09 2.20 5.50 -17.35 -0.10 2.11 16 19 N -0.75 -20.42 11.84 55.55 0.66 -19.76 16 20 Si 0.92 18.62 29.56 -169.99 -5.03 13.60 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.09 1.41 8.14 -51.92 -0.42 0.98 16 26 H 0.08 1.56 6.09 -51.93 -0.32 1.25 16 27 H 0.17 1.87 8.06 -52.48 -0.42 1.45 16 28 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.19 4.47 5.79 -52.49 -0.30 4.17 16 32 H 0.40 7.90 7.98 -40.82 -0.33 7.57 16 33 H 0.28 6.79 8.29 -40.82 -0.34 6.45 16 LS Contribution 293.01 15.07 4.42 4.42 Total: -1.00 -30.25 293.01 -6.73 -36.99 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.03 Total: 12.85 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -3.38 Total: 5.50 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.22 Total: -57.72 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.06 Total: -15.64 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.25 -6.73 -36.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338266724.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.378 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds