Wall clock time and date at job start Mon Mar 30 2020 01:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30504 * 125.72154 * 2 1 4 4 C 1.34142 * 109.35707 * 180.24933 * 3 2 1 5 5 C 1.34648 * 108.20770 * 359.75693 * 4 3 2 6 6 N 1.35889 * 125.71850 * 179.83757 * 2 1 3 7 7 C 1.39959 * 126.47675 * 0.02562 * 6 2 1 8 8 C 1.39145 * 120.89028 * 244.95263 * 7 6 2 9 9 C 1.38083 * 119.17650 * 180.30132 * 8 7 6 10 10 N 1.31975 * 121.02318 * 359.69889 * 9 8 7 11 11 C 1.31839 * 121.95815 * 0.02870 * 10 9 8 12 12 C 1.38864 * 120.70685 * 359.97438 * 11 10 9 13 13 N 1.39549 * 120.54270 * 179.97438 * 12 11 10 14 14 C 1.34781 * 120.00189 * 24.77241 * 13 12 11 15 15 O 1.21757 * 120.00082 * 5.53825 * 14 13 12 16 16 C 1.46119 * 120.00002 * 185.53728 * 14 13 12 17 17 H 1.07995 * 119.99922 * 354.98377 * 16 14 13 18 18 C 1.40133 * 119.99885 * 174.70052 * 16 14 13 19 19 N 1.30630 * 120.00069 * 5.02252 * 18 16 14 20 20 Si 1.86799 * 120.00080 * 185.02282 * 18 16 14 21 21 H 1.48504 * 109.47111 * 95.00017 * 20 18 16 22 22 H 1.48500 * 109.47085 * 215.00184 * 20 18 16 23 23 H 1.48499 * 109.46901 * 335.00290 * 20 18 16 24 24 H 1.08999 * 109.47483 * 270.16249 * 1 2 3 25 25 H 1.09007 * 109.46590 * 30.16186 * 1 2 3 26 26 H 1.08997 * 109.47194 * 150.15270 * 1 2 3 27 27 H 1.08004 * 125.89540 * 179.77731 * 4 3 2 28 28 H 1.08000 * 126.58216 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.41049 * 0.02562 * 8 7 6 30 30 H 1.08005 * 119.48575 * 179.72642 * 9 8 7 31 31 H 1.07999 * 119.64501 * 180.02562 * 11 10 9 32 32 H 0.97004 * 119.99975 * 204.77108 * 13 12 11 33 33 H 0.96995 * 120.00349 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2690 1.0595 0.0000 4 6 3.5560 0.6816 -0.0055 5 6 3.5994 -0.6642 -0.0037 6 7 2.3003 -1.1033 0.0031 7 6 1.8724 -2.4358 0.0064 8 6 2.1349 -3.2678 1.0904 9 6 1.7017 -4.5784 1.0536 10 7 1.0407 -5.0472 0.0119 11 6 0.7643 -4.2954 -1.0352 12 6 1.1637 -2.9661 -1.0791 13 7 0.8697 -2.1736 -2.1894 14 6 -0.1803 -2.4798 -2.9770 15 8 -0.9316 -3.3857 -2.6650 16 6 -0.4170 -1.7246 -4.2053 17 1 0.1999 -0.8701 -4.4412 18 6 -1.4407 -2.1126 -5.0800 19 7 -2.2458 -3.0874 -4.7517 20 14 -1.6540 -1.2357 -6.7156 21 1 -0.9431 -1.9908 -7.7785 22 1 -3.0989 -1.1538 -7.0486 23 1 -1.0896 0.1345 -6.6199 24 1 -0.3634 0.0029 1.0276 25 1 -0.3633 0.8886 -0.5164 26 1 -0.3633 -0.8913 -0.5114 27 1 4.4101 1.3427 -0.0102 28 1 4.4868 -1.2796 -0.0065 29 1 2.6746 -2.8943 1.9481 30 1 1.9066 -5.2297 1.8904 31 1 0.2206 -4.7176 -1.8674 32 1 1.4211 -1.4022 -2.3944 33 1 -2.9547 -3.3558 -5.3570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338266724.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:46 Heat of formation + Delta-G solvation = 46.786775 kcal Electronic energy + Delta-G solvation = -20568.670047 eV Core-core repulsion = 17401.881808 eV Total energy + Delta-G solvation = -3166.788239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.43009 -41.36591 -39.43448 -36.23360 -35.18204 -34.52934 -32.70765 -31.74292 -30.90774 -28.41855 -27.89903 -25.09583 -24.62835 -22.30763 -22.04434 -21.31991 -19.74438 -19.05059 -18.02486 -17.95738 -17.13084 -16.25680 -16.12627 -15.99749 -15.55167 -15.20893 -15.01340 -14.73001 -14.64391 -14.39103 -14.02276 -13.74733 -13.44034 -13.33593 -13.22146 -12.90094 -12.76968 -12.07600 -11.92571 -11.39018 -11.06542 -10.99255 -10.65668 -10.45411 -10.00117 -9.38993 -9.09395 -8.46250 -7.04226 -0.16475 0.09689 0.95728 1.36734 1.37992 1.53917 1.58195 2.06687 2.13806 2.26299 2.53561 2.71673 3.41757 3.44140 3.59330 3.64100 3.77373 3.90142 4.20569 4.35970 4.43588 4.50581 4.55495 4.70439 4.74796 4.89976 4.97196 5.18249 5.23135 5.41121 5.56932 5.75983 5.89297 5.99796 6.20842 6.69495 6.94193 7.00337 7.04583 8.16163 8.46060 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.006763 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.973344 B = 4138.964091 C = 5277.543430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.206 3.794 3 N -0.510 5.510 4 C -0.036 4.036 5 C -0.047 4.047 6 N -0.410 5.410 7 C 0.086 3.914 8 C -0.117 4.117 9 C 0.066 3.934 10 N -0.473 5.473 11 C 0.069 3.931 12 C 0.136 3.864 13 N -0.674 5.674 14 C 0.532 3.468 15 O -0.593 6.593 16 C -0.558 4.558 17 H 0.086 0.914 18 C 0.037 3.963 19 N -0.802 5.802 20 Si 0.996 3.004 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.251 1.251 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.201 0.799 28 H 0.207 0.793 29 H 0.175 0.825 30 H 0.202 0.798 31 H 0.150 0.850 32 H 0.400 0.600 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 3.598 8.714 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 N -0.230 5.230 4 C -0.182 4.182 5 C -0.177 4.177 6 N -0.091 5.091 7 C -0.017 4.017 8 C -0.138 4.138 9 C -0.092 4.092 10 N -0.182 5.182 11 C -0.092 4.092 12 C 0.033 3.967 13 N -0.315 5.315 14 C 0.341 3.659 15 O -0.478 6.478 16 C -0.593 4.593 17 H 0.104 0.896 18 C -0.181 4.181 19 N -0.430 5.430 20 Si 0.815 3.185 21 H -0.186 1.186 22 H -0.193 1.193 23 H -0.175 1.175 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.218 0.782 28 H 0.223 0.777 29 H 0.192 0.808 30 H 0.219 0.781 31 H 0.167 0.833 32 H 0.235 0.765 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.375 2.727 8.784 13.134 hybrid contribution 0.466 0.599 -0.964 1.227 sum 9.842 3.326 7.820 13.003 Atomic orbital electron populations 1.20216 0.84991 1.03733 1.03890 1.23750 0.95939 0.80946 1.04862 1.70274 1.03617 1.28096 1.20965 1.22829 0.94625 0.93392 1.07373 1.23374 0.86603 0.97021 1.10657 1.42814 1.07388 1.03731 1.55168 1.17770 1.05538 0.83860 0.94514 1.22276 1.00417 0.94259 0.96828 1.23259 0.94980 0.93801 0.97141 1.67710 1.11238 1.38394 1.00871 1.23007 0.99483 0.88803 0.97877 1.19248 0.97197 0.92130 0.88165 1.43810 1.31770 1.30190 1.25771 1.18642 0.78644 0.84644 0.83962 1.90582 1.48253 1.35080 1.73906 1.21295 1.18388 1.15554 1.04065 0.89586 1.26881 0.93104 0.94709 1.03427 1.70086 1.12717 1.23544 1.36656 0.85014 0.78546 0.79281 0.75665 1.18641 1.19316 1.17468 0.88849 0.88831 0.92696 0.78228 0.77668 0.80787 0.78120 0.83264 0.76500 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.16 71.24 0.72 -1.54 16 2 C 0.21 6.73 7.22 137.86 0.99 7.73 16 3 N -0.51 -16.48 11.24 -187.52 -2.11 -18.59 16 4 C -0.04 -0.92 11.85 83.52 0.99 0.07 16 5 C -0.05 -1.13 11.50 83.04 0.96 -0.17 16 6 N -0.41 -12.17 2.39 -335.76 -0.80 -12.97 16 7 C 0.09 2.71 5.49 38.50 0.21 2.92 16 8 C -0.12 -2.86 10.02 22.45 0.22 -2.64 16 9 C 0.07 1.73 11.17 84.63 0.95 2.67 16 10 N -0.47 -17.16 10.35 -195.36 -2.02 -19.18 16 11 C 0.07 2.97 9.90 84.84 0.84 3.81 16 12 C 0.14 5.45 5.70 38.51 0.22 5.67 16 13 N -0.67 -29.69 4.00 -306.88 -1.23 -30.92 16 14 C 0.53 28.74 7.54 86.29 0.65 29.39 16 15 O -0.59 -36.13 12.22 -4.53 -0.06 -36.19 16 16 C -0.56 -29.75 9.53 24.78 0.24 -29.52 16 17 H 0.09 4.21 7.85 -2.91 -0.02 4.19 16 18 C 0.04 1.92 5.50 85.33 0.47 2.39 16 19 N -0.80 -45.68 11.84 21.85 0.26 -45.42 16 20 Si 1.00 38.73 29.56 68.60 2.03 40.76 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 23 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 26 H 0.05 2.11 6.09 -2.39 -0.01 2.10 16 27 H 0.20 3.64 8.06 -2.91 -0.02 3.61 16 28 H 0.21 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.20 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.15 7.69 5.79 -2.91 -0.02 7.67 16 32 H 0.40 16.47 7.98 -92.71 -0.74 15.73 16 33 H 0.28 14.48 8.29 -92.71 -0.77 13.71 16 Total: -1.00 -70.55 293.01 3.96 -66.59 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.43 Total: 35.15 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 7.46 Total: 20.78 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -5.90 Total: -127.09 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.06 Total: -36.19 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -70.55 3.96 -66.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338266724.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.380 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds