Wall clock time and date at job start Mon Mar 30 2020 01:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35745 * 125.89483 * 2 1 4 4 C 1.35969 * 107.75921 * 180.14027 * 3 2 1 5 5 N 1.39895 * 126.16672 * 179.83637 * 4 3 2 6 6 C 1.34777 * 120.00292 * 359.69016 * 5 4 3 7 7 O 1.21785 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.41775 * 119.99702 * 179.97438 * 6 5 4 9 9 H 1.07995 * 120.00226 * 359.71998 * 8 6 5 10 10 C 1.40139 * 119.99497 * 179.97438 * 8 6 5 11 11 N 1.30627 * 120.00531 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99896 * 179.97438 * 10 8 6 13 13 H 1.48511 * 109.47049 * 90.00082 * 12 10 8 14 14 H 1.48497 * 109.47719 * 210.00154 * 12 10 8 15 15 H 1.48494 * 109.47227 * 330.00673 * 12 10 8 16 16 C 1.41416 * 107.65781 * 359.57087 * 4 3 2 17 17 C 1.48227 * 125.99406 * 180.24361 * 16 4 3 18 18 C 1.39408 * 119.73398 * 154.72647 * 17 16 4 19 19 C 1.38364 * 119.06137 * 179.73160 * 18 17 16 20 20 C 1.38817 * 118.51654 * 0.53255 * 19 18 17 21 21 C 1.38223 * 119.38254 * 359.73115 * 20 19 18 22 22 N 1.31783 * 120.89805 * 359.97438 * 21 20 19 23 23 N 1.31630 * 108.01000 * 0.26389 * 16 4 3 24 24 H 1.08999 * 109.47591 * 270.31205 * 1 2 3 25 25 H 1.09000 * 109.47529 * 30.31728 * 1 2 3 26 26 H 1.08996 * 109.46932 * 150.31589 * 1 2 3 27 27 H 1.07994 * 126.11935 * 359.96704 * 3 2 1 28 28 H 0.96999 * 119.99661 * 179.68572 * 5 4 3 29 29 H 0.96996 * 120.00085 * 179.97438 * 11 10 8 30 30 H 1.08003 * 120.46675 * 0.02562 * 18 17 16 31 31 H 1.08004 * 120.73665 * 180.26227 * 19 18 17 32 32 H 1.08004 * 120.30208 * 179.70651 * 20 19 18 33 33 H 1.08002 * 119.54659 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2609 1.0997 0.0000 4 6 3.5530 0.6764 -0.0032 5 7 4.6891 1.4927 -0.0075 6 6 4.5553 2.8338 -0.0151 7 8 3.4454 3.3351 -0.0187 8 6 5.7068 3.6610 -0.0189 9 1 6.6910 3.2165 -0.0111 10 6 5.5677 5.0554 -0.0274 11 7 4.3772 5.5931 -0.0313 12 14 7.0847 6.1454 -0.0317 13 1 7.4887 6.4259 -1.4330 14 1 6.7784 7.4231 0.6603 15 1 8.1932 5.4537 0.6738 16 6 3.5412 -0.7376 0.0049 17 6 4.7332 -1.6187 0.0099 18 6 4.6386 -2.9070 0.5341 19 6 5.7585 -3.7196 0.5266 20 6 6.9411 -3.2134 0.0049 21 6 6.9655 -1.9244 -0.4937 22 7 5.8830 -1.1730 -0.4801 23 7 2.2861 -1.1342 0.0068 24 1 -0.3634 0.0056 1.0276 25 1 -0.3634 0.8871 -0.5187 26 1 -0.3633 -0.8928 -0.5089 27 1 1.9274 2.1268 -0.0005 28 1 5.5731 1.0935 -0.0049 29 1 4.2810 6.5583 -0.0368 30 1 3.7031 -3.2673 0.9360 31 1 5.7145 -4.7237 0.9219 32 1 7.8339 -3.8210 -0.0109 33 1 7.8843 -1.5278 -0.8998 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338272190.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:17 Heat of formation + Delta-G solvation = 82.874600 kcal Electronic energy + Delta-G solvation = -19916.680040 eV Core-core repulsion = 16751.456687 eV Total energy + Delta-G solvation = -3165.223354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68642 -39.57019 -37.34604 -33.81701 -32.83608 -32.33802 -31.99355 -30.68086 -28.67647 -26.78214 -25.65206 -23.37456 -23.22828 -21.17019 -20.01927 -19.19096 -17.36401 -16.64526 -16.27913 -15.77118 -15.45291 -15.18347 -14.98695 -14.41095 -13.88374 -13.76123 -13.58083 -13.09150 -12.92117 -12.54819 -12.29876 -12.14205 -12.03294 -11.54125 -11.29495 -11.07167 -10.56040 -10.39828 -10.17724 -9.86167 -9.48196 -9.42626 -9.24793 -8.80751 -8.28366 -7.61712 -6.50593 -6.28470 -4.76288 0.99266 1.38713 2.50823 2.92588 3.10223 3.18318 3.22167 3.42116 4.06246 4.10962 4.31446 4.57368 4.81620 4.90651 5.01488 5.15274 5.19567 5.25111 5.43246 5.60659 5.63057 5.73812 5.88242 5.88749 6.12134 6.21773 6.41054 6.61455 6.72652 6.93921 7.33798 7.64101 8.01562 8.08494 8.17015 8.29271 8.45834 8.91155 9.54230 10.49226 10.71873 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016006 B = 0.006073 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.924458 B = 4609.413385 C = 6294.558476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.370 5.370 3 C 0.002 3.998 4 C 0.081 3.919 5 N -0.667 5.667 6 C 0.549 3.451 7 O -0.578 6.578 8 C -0.536 4.536 9 H 0.070 0.930 10 C 0.090 3.910 11 N -0.752 5.752 12 Si 0.911 3.089 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.263 1.263 16 C 0.058 3.942 17 C 0.224 3.776 18 C -0.151 4.151 19 C -0.076 4.076 20 C -0.183 4.183 21 C 0.108 3.892 22 N -0.471 5.471 23 N -0.284 5.284 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.207 0.793 28 H 0.401 0.599 29 H 0.270 0.730 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 -14.058 0.770 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.159 5.159 3 C -0.144 4.144 4 C -0.028 4.028 5 N -0.312 5.312 6 C 0.358 3.642 7 O -0.462 6.462 8 C -0.572 4.572 9 H 0.088 0.912 10 C -0.132 4.132 11 N -0.380 5.380 12 Si 0.735 3.265 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.187 1.187 16 C -0.107 4.107 17 C 0.086 3.914 18 C -0.172 4.172 19 C -0.102 4.102 20 C -0.204 4.204 21 C -0.050 4.050 22 N -0.182 5.182 23 N -0.111 5.111 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.223 0.777 28 H 0.236 0.764 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.229 -13.534 0.436 13.596 hybrid contribution 1.655 0.123 0.327 1.691 sum 0.426 -13.411 0.763 13.439 Atomic orbital electron populations 1.21698 0.74463 1.03924 1.02778 1.48189 1.05928 1.03586 1.58157 1.23378 0.89437 0.93433 1.08176 1.17858 0.89153 0.88296 1.07447 1.43554 1.05359 1.06457 1.75793 1.16992 0.90815 0.78683 0.77708 1.90441 1.27376 1.72293 1.56131 1.19995 0.93191 0.91096 1.52902 0.91209 1.25729 0.96651 0.98483 0.92375 1.70007 1.23080 1.11741 1.33165 0.86316 0.81968 0.79189 0.79015 1.19547 1.20361 1.18717 1.19862 0.90653 0.91271 1.08881 1.18546 0.89483 0.90016 0.93309 1.22059 0.99914 0.94212 1.01051 1.21488 0.92452 0.99649 0.96644 1.22136 0.98993 0.97684 1.01591 1.22742 0.96212 0.90625 0.95456 1.67528 0.98678 1.37017 1.14932 1.77110 0.99766 1.09051 1.25218 0.91313 0.89474 0.90014 0.77695 0.76417 0.91872 0.84503 0.84914 0.84940 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.43 11.47 59.85 0.69 2.12 16 2 N -0.37 -6.94 4.03 -67.78 -0.27 -7.21 16 3 C 0.00 0.03 10.36 -16.63 -0.17 -0.14 16 4 C 0.08 1.90 6.87 -83.78 -0.58 1.32 16 5 N -0.67 -16.78 5.40 -12.46 -0.07 -16.85 16 6 C 0.55 15.88 7.54 -14.91 -0.11 15.77 16 7 O -0.58 -17.95 12.01 5.11 0.06 -17.89 16 8 C -0.54 -15.15 9.31 -37.52 -0.35 -15.50 16 9 H 0.07 1.83 7.85 -52.49 -0.41 1.41 16 10 C 0.09 2.46 5.50 -17.35 -0.10 2.36 16 11 N -0.75 -21.82 11.73 55.55 0.65 -21.17 16 12 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 15 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 16 C 0.06 1.20 6.91 -82.64 -0.57 0.63 16 17 C 0.22 4.04 6.72 -82.95 -0.56 3.48 16 18 C -0.15 -2.18 9.74 -39.10 -0.38 -2.56 16 19 C -0.08 -0.86 10.16 -39.32 -0.40 -1.26 16 20 C -0.18 -1.99 10.11 -39.37 -0.40 -2.39 16 21 C 0.11 1.43 11.17 -17.58 -0.20 1.24 16 22 N -0.47 -8.27 8.56 -9.79 -0.08 -8.36 16 23 N -0.28 -5.55 12.43 33.50 0.42 -5.13 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.21 4.98 5.82 -52.49 -0.31 4.68 16 28 H 0.40 9.40 7.06 -40.82 -0.29 9.11 16 29 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 30 H 0.14 1.84 8.02 -52.48 -0.42 1.42 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 296.56 15.07 4.47 4.47 Total: -1.00 -35.11 296.56 -6.07 -41.18 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -3.10 Total: 11.14 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -3.12 Total: 5.07 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.64 Total: -58.72 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.06 Total: -17.89 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.11 -6.07 -41.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338272190.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.059 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds