Wall clock time and date at job start Mon Mar 30 2020 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35745 * 125.89483 * 2 1 4 4 C 1.35969 * 107.75921 * 180.14027 * 3 2 1 5 5 N 1.39895 * 126.16672 * 179.83637 * 4 3 2 6 6 C 1.34777 * 120.00292 * 359.69016 * 5 4 3 7 7 O 1.21785 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.41775 * 119.99702 * 179.97438 * 6 5 4 9 9 H 1.07995 * 120.00226 * 359.71998 * 8 6 5 10 10 C 1.40139 * 119.99497 * 179.97438 * 8 6 5 11 11 N 1.30627 * 120.00531 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99896 * 179.97438 * 10 8 6 13 13 H 1.48511 * 109.47049 * 90.00082 * 12 10 8 14 14 H 1.48497 * 109.47719 * 210.00154 * 12 10 8 15 15 H 1.48494 * 109.47227 * 330.00673 * 12 10 8 16 16 C 1.41416 * 107.65781 * 359.57087 * 4 3 2 17 17 C 1.48227 * 125.99406 * 180.24361 * 16 4 3 18 18 C 1.39408 * 119.73398 * 154.72647 * 17 16 4 19 19 C 1.38364 * 119.06137 * 179.73160 * 18 17 16 20 20 C 1.38817 * 118.51654 * 0.53255 * 19 18 17 21 21 C 1.38223 * 119.38254 * 359.73115 * 20 19 18 22 22 N 1.31783 * 120.89805 * 359.97438 * 21 20 19 23 23 N 1.31630 * 108.01000 * 0.26389 * 16 4 3 24 24 H 1.08999 * 109.47591 * 270.31205 * 1 2 3 25 25 H 1.09000 * 109.47529 * 30.31728 * 1 2 3 26 26 H 1.08996 * 109.46932 * 150.31589 * 1 2 3 27 27 H 1.07994 * 126.11935 * 359.96704 * 3 2 1 28 28 H 0.96999 * 119.99661 * 179.68572 * 5 4 3 29 29 H 0.96996 * 120.00085 * 179.97438 * 11 10 8 30 30 H 1.08003 * 120.46675 * 0.02562 * 18 17 16 31 31 H 1.08004 * 120.73665 * 180.26227 * 19 18 17 32 32 H 1.08004 * 120.30208 * 179.70651 * 20 19 18 33 33 H 1.08002 * 119.54659 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2609 1.0997 0.0000 4 6 3.5530 0.6764 -0.0032 5 7 4.6891 1.4927 -0.0075 6 6 4.5553 2.8338 -0.0151 7 8 3.4454 3.3351 -0.0187 8 6 5.7068 3.6610 -0.0189 9 1 6.6910 3.2165 -0.0111 10 6 5.5677 5.0554 -0.0274 11 7 4.3772 5.5931 -0.0313 12 14 7.0847 6.1454 -0.0317 13 1 7.4887 6.4259 -1.4330 14 1 6.7784 7.4231 0.6603 15 1 8.1932 5.4537 0.6738 16 6 3.5412 -0.7376 0.0049 17 6 4.7332 -1.6187 0.0099 18 6 4.6386 -2.9070 0.5341 19 6 5.7585 -3.7196 0.5266 20 6 6.9411 -3.2134 0.0049 21 6 6.9655 -1.9244 -0.4937 22 7 5.8830 -1.1730 -0.4801 23 7 2.2861 -1.1342 0.0068 24 1 -0.3634 0.0056 1.0276 25 1 -0.3634 0.8871 -0.5187 26 1 -0.3633 -0.8928 -0.5089 27 1 1.9274 2.1268 -0.0005 28 1 5.5731 1.0935 -0.0049 29 1 4.2810 6.5583 -0.0368 30 1 3.7031 -3.2673 0.9360 31 1 5.7145 -4.7237 0.9219 32 1 7.8339 -3.8210 -0.0109 33 1 7.8843 -1.5278 -0.8998 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338272190.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:16 Heat of formation + Delta-G solvation = 57.122309 kcal Electronic energy + Delta-G solvation = -19917.796744 eV Core-core repulsion = 16751.456687 eV Total energy + Delta-G solvation = -3166.340057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.22387 -40.71326 -39.40457 -35.53200 -34.66953 -33.89229 -33.35430 -31.84181 -30.42914 -28.57102 -27.18871 -24.49050 -24.40832 -22.97513 -21.50814 -20.99738 -19.17758 -18.23473 -17.56777 -17.37301 -16.87907 -16.49547 -16.40090 -15.99996 -15.67080 -14.98344 -14.83633 -14.76049 -14.42376 -14.05273 -13.68275 -13.49060 -13.47109 -13.17149 -12.78455 -12.67189 -12.59670 -12.06912 -11.85939 -11.31258 -10.91629 -10.86191 -10.68622 -10.37124 -9.80736 -9.60068 -8.35207 -8.33877 -6.93646 -0.14288 0.40171 0.96922 1.40181 1.40788 1.54707 1.58320 1.78633 2.24661 2.51333 2.90833 2.99011 3.41688 3.69226 3.72883 3.87586 4.09957 4.23530 4.24979 4.30968 4.45213 4.59713 4.66089 4.75960 4.86926 4.94338 5.15827 5.25562 5.26623 5.35243 5.80739 5.92950 6.08165 6.20055 6.48510 6.60957 6.77882 7.07219 7.52857 8.43148 8.61007 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016006 B = 0.006073 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.924458 B = 4609.413385 C = 6294.558476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.365 5.365 3 C -0.008 4.008 4 C 0.037 3.963 5 N -0.663 5.663 6 C 0.531 3.469 7 O -0.614 6.614 8 C -0.566 4.566 9 H 0.083 0.917 10 C 0.035 3.965 11 N -0.800 5.800 12 Si 1.000 3.000 13 H -0.260 1.260 14 H -0.268 1.268 15 H -0.250 1.250 16 C 0.061 3.939 17 C 0.179 3.821 18 C -0.152 4.152 19 C -0.068 4.068 20 C -0.158 4.158 21 C 0.091 3.909 22 N -0.511 5.511 23 N -0.277 5.277 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.183 0.817 28 H 0.406 0.594 29 H 0.279 0.721 30 H 0.141 0.859 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -16.208 1.044 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.154 5.154 3 C -0.155 4.155 4 C -0.071 4.071 5 N -0.308 5.308 6 C 0.340 3.660 7 O -0.502 6.502 8 C -0.601 4.601 9 H 0.101 0.899 10 C -0.183 4.183 11 N -0.428 5.428 12 Si 0.819 3.181 13 H -0.184 1.184 14 H -0.193 1.193 15 H -0.174 1.174 16 C -0.104 4.104 17 C 0.043 3.957 18 C -0.173 4.173 19 C -0.094 4.094 20 C -0.178 4.178 21 C -0.067 4.067 22 N -0.222 5.222 23 N -0.104 5.104 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.200 0.800 28 H 0.242 0.758 29 H 0.089 0.911 30 H 0.159 0.841 31 H 0.193 0.807 32 H 0.196 0.804 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.741 -15.748 0.711 15.782 hybrid contribution 1.008 0.595 0.235 1.194 sum 1.749 -15.153 0.947 15.283 Atomic orbital electron populations 1.22183 0.71107 1.05842 1.04761 1.48585 1.07601 1.02132 1.57041 1.23011 0.90194 0.93624 1.08668 1.18229 0.88961 0.89854 1.10009 1.43182 1.06262 1.05608 1.75707 1.17394 0.90808 0.80025 0.77766 1.90408 1.28434 1.73486 1.57835 1.20473 0.93571 0.92321 1.53723 0.89891 1.26959 1.00651 0.99739 0.90927 1.70140 1.26185 1.12705 1.33799 0.84982 0.76838 0.76669 0.79611 1.18423 1.19273 1.17379 1.20310 0.92068 0.90439 1.07548 1.18530 0.89019 0.91332 0.96840 1.22179 1.01505 0.93128 1.00506 1.21989 0.91188 1.00857 0.95339 1.22634 1.00359 0.96615 0.98232 1.23304 0.95800 0.91813 0.95762 1.67387 0.99642 1.38997 1.16166 1.77051 0.99563 1.09070 1.24729 0.89236 0.88191 0.87527 0.79998 0.75818 0.91086 0.84067 0.80652 0.80434 0.80115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.48 11.47 127.77 1.47 3.95 16 2 N -0.37 -14.00 4.03 -368.37 -1.48 -15.48 16 3 C -0.01 -0.39 10.36 83.56 0.87 0.47 16 4 C 0.04 1.82 6.87 38.11 0.26 2.09 16 5 N -0.66 -35.29 5.40 -311.53 -1.68 -36.97 16 6 C 0.53 32.44 7.54 85.12 0.64 33.08 16 7 O -0.61 -40.62 12.01 -4.62 -0.06 -40.68 16 8 C -0.57 -33.03 9.31 23.61 0.22 -32.81 16 9 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 10 C 0.04 1.96 5.50 85.33 0.47 2.43 16 11 N -0.80 -48.00 11.73 21.85 0.26 -47.74 16 12 Si 1.00 40.67 29.56 68.60 2.03 42.70 16 13 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 14 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 15 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 16 C 0.06 2.63 6.91 42.61 0.29 2.92 16 17 C 0.18 6.50 6.72 41.95 0.28 6.78 16 18 C -0.15 -4.13 9.74 22.58 0.22 -3.91 16 19 C -0.07 -1.27 10.16 22.44 0.23 -1.04 16 20 C -0.16 -2.76 10.11 22.40 0.23 -2.54 16 21 C 0.09 2.24 11.17 84.70 0.95 3.19 16 22 N -0.51 -17.98 8.56 -184.89 -1.58 -19.56 16 23 N -0.28 -10.95 12.43 -47.93 -0.60 -11.55 16 24 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.18 9.60 5.82 -2.91 -0.02 9.58 16 28 H 0.41 20.05 7.06 -92.71 -0.65 19.40 16 29 H 0.28 14.99 8.29 -92.71 -0.77 14.22 16 30 H 0.14 3.59 8.02 -2.91 -0.02 3.56 16 31 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -82.16 296.56 3.51 -78.65 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.51 Total: 36.02 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.12 Total: 14.61 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -5.09 Total: -131.31 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.06 Total: -40.68 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -82.16 3.51 -78.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338272190.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.776 kcal (2) G-P(sol) polarization free energy of solvation -82.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds