Wall clock time and date at job start Mon Mar 30 2020 00:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99997 * 2 1 4 4 H 1.48503 * 109.47166 * 240.00101 * 3 2 1 5 5 H 1.48495 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47006 * 120.00347 * 3 2 1 7 7 C 1.37877 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99696 * 186.62209 * 7 2 1 9 9 C 1.50701 * 120.00353 * 6.61859 * 7 2 1 10 10 C 1.52997 * 112.99995 * 65.39751 * 9 7 2 11 11 O 1.45203 * 109.47027 * 53.52122 * 10 9 7 12 12 C 1.34225 * 116.99947 * 180.02562 * 11 10 9 13 13 O 1.20824 * 120.00289 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00093 * 180.02562 * 12 11 10 15 15 H 1.09004 * 109.57945 * 304.83355 * 14 12 11 16 16 C 1.53147 * 109.52673 * 64.99607 * 14 12 11 17 17 O 1.43073 * 109.20548 * 175.24830 * 16 14 12 18 18 C 1.43077 * 113.59305 * 302.01434 * 17 16 14 19 19 C 1.53138 * 109.14874 * 57.95324 * 18 17 16 20 20 O 1.43073 * 109.15148 * 304.68698 * 19 18 17 21 21 C 1.54037 * 113.92685 * 197.33245 * 9 7 2 22 22 O 1.44175 * 85.51887 * 91.65678 * 21 9 7 23 23 C 1.44176 * 93.34057 * 24.19453 * 22 21 9 24 24 H 0.96999 * 119.99784 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47171 * 293.52175 * 10 9 7 26 26 H 1.08997 * 109.47409 * 173.52334 * 10 9 7 27 27 H 1.09004 * 109.51879 * 55.31149 * 16 14 12 28 28 H 1.08998 * 109.52161 * 295.18865 * 16 14 12 29 29 H 1.08997 * 109.52111 * 177.85809 * 18 17 16 30 30 H 1.09002 * 109.52133 * 298.05292 * 18 17 16 31 31 H 1.09003 * 109.52472 * 64.58878 * 19 18 17 32 32 H 1.09001 * 109.52665 * 184.78198 * 19 18 17 33 33 H 1.08995 * 113.86212 * 205.80971 * 21 9 7 34 34 H 1.09002 * 113.86224 * 337.51248 * 21 9 7 35 35 H 1.09004 * 113.86495 * 221.65970 * 23 22 21 36 36 H 1.09001 * 113.87063 * 89.94993 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1973 0.1073 9 6 1.2586 -2.4948 -0.1515 10 6 0.5844 -2.6422 -1.5170 11 8 1.5662 -2.4345 -2.5665 12 6 1.1333 -2.5296 -3.8334 13 8 -0.0275 -2.7786 -4.0582 14 6 2.0952 -2.3269 -4.9756 15 1 2.5872 -1.3598 -4.8716 16 6 3.1468 -3.4402 -4.9629 17 8 3.9887 -3.3055 -6.1118 18 6 3.2764 -3.3487 -7.3519 19 6 2.2249 -2.2355 -7.3663 20 8 1.3830 -2.3702 -6.2174 21 6 2.0676 -3.7326 0.2797 22 8 1.4699 -3.5314 1.5762 23 6 0.3354 -2.8239 1.0368 24 1 -0.4850 0.8401 0.0004 25 1 -0.2105 -1.9025 -1.6116 26 1 0.1620 -3.6429 -1.6075 27 1 2.6504 -4.4104 -4.9866 28 1 3.7496 -3.3614 -4.0582 29 1 3.9730 -3.2026 -8.1774 30 1 2.7845 -4.3158 -7.4559 31 1 2.7212 -1.2653 -7.3426 32 1 1.6222 -2.3153 -8.2710 33 1 1.7570 -4.6551 -0.2108 34 1 3.1469 -3.5816 0.2635 35 1 0.0408 -1.9521 1.6211 36 1 -0.5042 -3.4689 0.7775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345269017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:41 Heat of formation + Delta-G solvation = -177.726325 kcal Electronic energy + Delta-G solvation = -21935.379803 eV Core-core repulsion = 18386.961523 eV Total energy + Delta-G solvation = -3548.418280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50061 -39.52006 -38.87194 -36.30718 -35.56861 -32.96704 -31.99527 -30.00688 -28.40503 -25.65054 -25.39451 -25.01014 -24.09984 -22.06938 -20.43553 -19.05484 -17.55885 -17.13292 -16.79741 -16.34804 -16.10980 -15.71235 -15.55263 -15.21314 -14.75695 -14.67354 -14.38180 -14.20019 -13.69134 -13.50134 -12.71626 -12.48749 -12.15553 -11.99915 -11.73690 -11.63599 -11.01865 -10.97769 -10.83868 -10.73853 -10.50882 -10.11036 -9.99076 -9.59071 -9.47394 -9.35010 -9.11459 -8.79646 -8.33581 -6.21005 -4.24046 2.58124 2.70416 3.25737 3.30694 3.33143 3.50553 3.97092 4.31002 4.36649 4.75507 4.82628 4.85014 4.89271 4.94615 5.13949 5.20312 5.33420 5.40388 5.55987 5.65451 5.84653 5.99218 6.14174 6.25951 6.32906 6.49016 6.72933 6.75379 6.91587 7.06397 7.24555 7.25794 7.32757 7.75371 8.12807 8.34959 8.73048 9.39947 10.87443 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.005864 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.641882 B = 4773.878460 C = 5368.300290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.487 4.487 8 H 0.066 0.934 9 C 0.032 3.968 10 C 0.084 3.916 11 O -0.325 6.325 12 C 0.461 3.539 13 O -0.499 6.499 14 C 0.064 3.936 15 H 0.107 0.893 16 C 0.041 3.959 17 O -0.372 6.372 18 C 0.019 3.981 19 C 0.025 3.975 20 O -0.356 6.356 21 C 0.028 3.972 22 O -0.388 6.388 23 C 0.051 3.949 24 H 0.266 0.734 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.085 -5.014 -11.979 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.525 4.525 8 H 0.085 0.915 9 C 0.032 3.968 10 C 0.010 3.990 11 O -0.240 6.240 12 C 0.302 3.698 13 O -0.387 6.387 14 C 0.005 3.995 15 H 0.125 0.875 16 C -0.036 4.036 17 O -0.291 6.291 18 C -0.058 4.058 19 C -0.052 4.052 20 O -0.275 6.275 21 C -0.049 4.049 22 O -0.307 6.307 23 C -0.026 4.026 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.636 -5.029 -11.716 13.567 hybrid contribution 0.029 1.002 -0.326 1.054 sum 4.665 -4.027 -12.042 13.527 Atomic orbital electron populations 1.69877 1.05959 1.27441 1.49338 1.24964 0.94940 0.99380 0.94334 0.86541 0.79603 0.82424 0.78868 1.19999 1.21233 1.20010 1.20508 0.93435 0.88259 1.50272 0.91536 1.21136 0.92732 0.94718 0.88233 1.23544 0.90945 0.99033 0.85459 1.86511 1.43567 1.80343 1.13554 1.22628 0.87679 0.74672 0.84856 1.90638 1.19030 1.43403 1.85623 1.22080 0.91497 1.02117 0.83847 0.87538 1.23152 0.93038 0.96957 0.90487 1.88139 1.32950 1.94288 1.13686 1.23316 0.95884 0.98929 0.87633 1.23346 0.93792 0.98768 0.89294 1.88206 1.32379 1.94505 1.12382 1.24102 0.99278 0.97293 0.84231 1.89498 1.37274 1.77719 1.26194 1.23926 0.88508 0.94323 0.95861 0.92430 0.89522 0.94228 0.91505 0.85706 0.87494 0.91871 0.91670 0.87200 0.92833 0.90296 0.88151 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 11.31 55.43 0.63 -23.24 16 2 C 0.07 1.74 5.25 -17.82 -0.09 1.65 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.49 -12.60 7.92 -34.44 -0.27 -12.88 16 8 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.03 0.76 0.62 -154.58 -0.10 0.67 16 10 C 0.08 1.90 4.67 37.16 0.17 2.07 16 11 O -0.32 -6.91 9.82 -39.24 -0.39 -7.29 16 12 C 0.46 9.12 7.29 36.01 0.26 9.39 16 13 O -0.50 -11.32 16.26 -25.43 -0.41 -11.73 16 14 C 0.06 1.00 3.37 -27.81 -0.09 0.90 16 15 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 16 C 0.04 0.54 6.31 37.23 0.23 0.77 16 17 O -0.37 -4.63 10.85 -48.81 -0.53 -5.16 16 18 C 0.02 0.18 7.05 37.23 0.26 0.45 16 19 C 0.02 0.26 7.05 37.23 0.26 0.52 16 20 O -0.36 -5.51 10.04 -62.50 -0.63 -6.14 16 21 C 0.03 0.59 8.35 37.61 0.31 0.90 16 22 O -0.39 -9.08 12.40 -35.23 -0.44 -9.51 16 23 C 0.05 1.18 7.91 37.61 0.30 1.48 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.09 2.21 7.21 -51.93 -0.37 1.84 16 26 H 0.04 0.83 8.04 -51.93 -0.42 0.42 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.99 8.03 -51.93 -0.42 0.58 16 34 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 35 H 0.10 2.52 7.36 -51.93 -0.38 2.13 16 36 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -30.60 307.30 -5.84 -36.44 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.94 Total: 0.54 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 1.25 Total: 5.92 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.63 Total: -23.24 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -2.39 Total: -39.84 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.60 -5.84 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345269017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.285 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds