Wall clock time and date at job start Mon Mar 30 2020 00:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99997 * 2 1 4 4 H 1.48503 * 109.47166 * 240.00101 * 3 2 1 5 5 H 1.48495 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47006 * 120.00347 * 3 2 1 7 7 C 1.37877 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99696 * 186.62209 * 7 2 1 9 9 C 1.50701 * 120.00353 * 6.61859 * 7 2 1 10 10 C 1.52997 * 112.99995 * 65.39751 * 9 7 2 11 11 O 1.45203 * 109.47027 * 53.52122 * 10 9 7 12 12 C 1.34225 * 116.99947 * 180.02562 * 11 10 9 13 13 O 1.20824 * 120.00289 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00093 * 180.02562 * 12 11 10 15 15 H 1.09004 * 109.57945 * 304.83355 * 14 12 11 16 16 C 1.53147 * 109.52673 * 64.99607 * 14 12 11 17 17 O 1.43073 * 109.20548 * 175.24830 * 16 14 12 18 18 C 1.43077 * 113.59305 * 302.01434 * 17 16 14 19 19 C 1.53138 * 109.14874 * 57.95324 * 18 17 16 20 20 O 1.43073 * 109.15148 * 304.68698 * 19 18 17 21 21 C 1.54037 * 113.92685 * 197.33245 * 9 7 2 22 22 O 1.44175 * 85.51887 * 91.65678 * 21 9 7 23 23 C 1.44176 * 93.34057 * 24.19453 * 22 21 9 24 24 H 0.96999 * 119.99784 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47171 * 293.52175 * 10 9 7 26 26 H 1.08997 * 109.47409 * 173.52334 * 10 9 7 27 27 H 1.09004 * 109.51879 * 55.31149 * 16 14 12 28 28 H 1.08998 * 109.52161 * 295.18865 * 16 14 12 29 29 H 1.08997 * 109.52111 * 177.85809 * 18 17 16 30 30 H 1.09002 * 109.52133 * 298.05292 * 18 17 16 31 31 H 1.09003 * 109.52472 * 64.58878 * 19 18 17 32 32 H 1.09001 * 109.52665 * 184.78198 * 19 18 17 33 33 H 1.08995 * 113.86212 * 205.80971 * 21 9 7 34 34 H 1.09002 * 113.86224 * 337.51248 * 21 9 7 35 35 H 1.09004 * 113.86495 * 221.65970 * 23 22 21 36 36 H 1.09001 * 113.87063 * 89.94993 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1973 0.1073 9 6 1.2586 -2.4948 -0.1515 10 6 0.5844 -2.6422 -1.5170 11 8 1.5662 -2.4345 -2.5665 12 6 1.1333 -2.5296 -3.8334 13 8 -0.0275 -2.7786 -4.0582 14 6 2.0952 -2.3269 -4.9756 15 1 2.5872 -1.3598 -4.8716 16 6 3.1468 -3.4402 -4.9629 17 8 3.9887 -3.3055 -6.1118 18 6 3.2764 -3.3487 -7.3519 19 6 2.2249 -2.2355 -7.3663 20 8 1.3830 -2.3702 -6.2174 21 6 2.0676 -3.7326 0.2797 22 8 1.4699 -3.5314 1.5762 23 6 0.3354 -2.8239 1.0368 24 1 -0.4850 0.8401 0.0004 25 1 -0.2105 -1.9025 -1.6116 26 1 0.1620 -3.6429 -1.6075 27 1 2.6504 -4.4104 -4.9866 28 1 3.7496 -3.3614 -4.0582 29 1 3.9730 -3.2026 -8.1774 30 1 2.7845 -4.3158 -7.4559 31 1 2.7212 -1.2653 -7.3426 32 1 1.6222 -2.3153 -8.2710 33 1 1.7570 -4.6551 -0.2108 34 1 3.1469 -3.5816 0.2635 35 1 0.0408 -1.9521 1.6211 36 1 -0.5042 -3.4689 0.7775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345269017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:40 Heat of formation + Delta-G solvation = -198.526309 kcal Electronic energy + Delta-G solvation = -21936.281758 eV Core-core repulsion = 18386.961523 eV Total energy + Delta-G solvation = -3549.320235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.87758 -41.08826 -40.34103 -37.60683 -36.97274 -34.89928 -33.09734 -31.77322 -29.44029 -27.37690 -27.12133 -26.45770 -25.65655 -23.14821 -21.82012 -20.89431 -18.96424 -18.61069 -17.97978 -17.94649 -17.30228 -17.10012 -16.96005 -16.60816 -16.29366 -16.20226 -16.11747 -15.91031 -14.94666 -14.57739 -14.35305 -13.99342 -13.74517 -13.45048 -13.27991 -12.84140 -12.67233 -12.64342 -12.35441 -12.09857 -11.85329 -11.81283 -11.57531 -11.31972 -11.18233 -10.92578 -10.69936 -10.35651 -10.19691 -8.18826 -6.26810 1.04238 1.32847 1.43657 1.44278 1.51278 2.41007 2.57672 2.86310 3.01387 3.23105 3.33206 3.56077 3.76938 3.93284 4.07199 4.13485 4.21866 4.24912 4.44620 4.46396 4.49417 4.56007 4.57998 4.74177 4.77149 4.79828 5.13444 5.21220 5.47345 5.50103 5.57738 5.72966 5.76193 5.86400 6.22350 6.70287 6.75089 7.39296 8.88072 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.005864 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.641882 B = 4773.878460 C = 5368.300290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.499 4.499 8 H 0.062 0.938 9 C 0.016 3.984 10 C 0.094 3.906 11 O -0.329 6.329 12 C 0.459 3.541 13 O -0.533 6.533 14 C 0.070 3.930 15 H 0.116 0.884 16 C 0.049 3.951 17 O -0.380 6.380 18 C 0.016 3.984 19 C 0.017 3.983 20 O -0.385 6.385 21 C 0.038 3.962 22 O -0.403 6.403 23 C 0.054 3.946 24 H 0.263 0.737 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 -5.525 -13.428 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.016 3.984 10 C 0.020 3.980 11 O -0.244 6.244 12 C 0.302 3.698 13 O -0.423 6.423 14 C 0.011 3.989 15 H 0.133 0.867 16 C -0.028 4.028 17 O -0.299 6.299 18 C -0.060 4.060 19 C -0.058 4.058 20 O -0.305 6.305 21 C -0.038 4.038 22 O -0.323 6.323 23 C -0.023 4.023 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.149 0.851 29 H 0.158 0.842 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.169 -5.548 -13.180 15.574 hybrid contribution -0.443 1.141 0.032 1.225 sum 5.726 -4.407 -13.148 15.002 Atomic orbital electron populations 1.69985 1.06987 1.27721 1.50283 1.25614 0.95601 1.02106 0.94322 0.85726 0.78542 0.79161 0.79028 1.19326 1.21343 1.19649 1.20770 0.93435 0.89574 1.49912 0.91962 1.21211 0.93446 0.95176 0.88611 1.23240 0.90273 0.98697 0.85796 1.86508 1.43115 1.80554 1.14206 1.23507 0.88062 0.73182 0.85051 1.90613 1.20747 1.45051 1.85898 1.22090 0.90565 1.03537 0.82684 0.86702 1.23064 0.92412 0.95915 0.91419 1.88135 1.33208 1.94232 1.14303 1.23572 0.96361 0.98813 0.87290 1.23708 0.94166 0.99675 0.88279 1.88165 1.34318 1.94785 1.13254 1.24218 0.99550 0.97264 0.82767 1.89471 1.37493 1.77735 1.27576 1.23831 0.89203 0.93990 0.95270 0.92766 0.92925 0.92679 0.91251 0.85071 0.84192 0.91398 0.90792 0.84671 0.89812 0.89345 0.90722 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.83 11.31 21.45 0.24 -49.59 16 2 C 0.02 1.24 5.25 84.65 0.44 1.69 16 3 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.50 -25.80 7.92 25.60 0.20 -25.60 16 8 H 0.06 3.19 7.82 -2.91 -0.02 3.17 16 9 C 0.02 0.76 0.62 -52.23 -0.03 0.72 16 10 C 0.09 4.27 4.67 71.98 0.34 4.60 16 11 O -0.33 -13.87 9.82 -51.37 -0.50 -14.38 16 12 C 0.46 18.06 7.29 71.24 0.52 18.58 16 13 O -0.53 -24.40 16.26 28.36 0.46 -23.93 16 14 C 0.07 2.12 3.37 29.90 0.10 2.22 16 15 H 0.12 3.23 8.14 -2.38 -0.02 3.21 16 16 C 0.05 1.20 6.31 72.03 0.45 1.66 16 17 O -0.38 -8.45 10.85 -136.00 -1.48 -9.93 16 18 C 0.02 0.25 7.05 72.03 0.51 0.76 16 19 C 0.02 0.31 7.05 72.03 0.51 0.82 16 20 O -0.39 -11.43 10.04 -122.91 -1.23 -12.66 16 21 C 0.04 1.54 8.35 72.27 0.60 2.14 16 22 O -0.40 -18.46 12.40 -148.98 -1.85 -20.31 16 23 C 0.05 2.50 7.91 72.28 0.57 3.08 16 24 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.05 2.75 7.21 -2.39 -0.02 2.73 16 26 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 27 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 2.86 8.03 -2.39 -0.02 2.84 16 34 H 0.09 3.36 8.09 -2.39 -0.02 3.34 16 35 H 0.07 3.82 7.36 -2.39 -0.02 3.80 16 36 H 0.07 2.84 8.10 -2.39 -0.02 2.82 16 Total: -1.00 -65.65 307.30 2.97 -62.69 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.08 Total: 13.28 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 4.22 Total: 10.68 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.24 Total: -49.59 kcal Atomic # 8 Polarization: -76.61 SS G_CDS: -4.60 Total: -81.21 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -65.65 2.97 -62.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345269017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.837 kcal (2) G-P(sol) polarization free energy of solvation -65.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds