Wall clock time and date at job start Mon Mar 30 2020 00:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00214 * 2 1 4 4 H 1.48496 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47152 * 299.99918 * 3 2 1 6 6 H 1.48496 * 109.46906 * 59.99733 * 3 2 1 7 7 C 1.37881 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99538 * 186.63401 * 7 2 1 9 9 C 1.50697 * 120.00067 * 6.63219 * 7 2 1 10 10 C 1.53002 * 112.99966 * 65.40016 * 9 7 2 11 11 O 1.45197 * 109.47199 * 53.51852 * 10 9 7 12 12 C 1.34222 * 116.99787 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00421 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00001 * 180.02562 * 12 11 10 15 15 H 1.08993 * 109.57794 * 54.83071 * 14 12 11 16 16 C 1.53150 * 109.52144 * 294.66949 * 14 12 11 17 17 O 1.43068 * 109.15030 * 184.78420 * 16 14 12 18 18 C 1.43077 * 113.59412 * 57.95633 * 17 16 14 19 19 C 1.53140 * 109.14893 * 302.04583 * 18 17 16 20 20 O 1.43077 * 109.52438 * 175.00166 * 14 12 11 21 21 C 1.54035 * 113.92220 * 197.33274 * 9 7 2 22 22 O 1.44177 * 85.52116 * 91.65988 * 21 9 7 23 23 C 1.44179 * 93.33786 * 24.19081 * 22 21 9 24 24 H 0.96998 * 119.99776 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47140 * 293.51440 * 10 9 7 26 26 H 1.09004 * 109.46354 * 173.52055 * 10 9 7 27 27 H 1.09000 * 109.52048 * 304.69159 * 16 14 12 28 28 H 1.09003 * 109.52049 * 64.87897 * 16 14 12 29 29 H 1.08995 * 109.53088 * 182.14581 * 18 17 16 30 30 H 1.09000 * 109.52602 * 61.94278 * 18 17 16 31 31 H 1.08998 * 109.52567 * 295.40995 * 19 18 17 32 32 H 1.08997 * 109.58200 * 175.24437 * 19 18 17 33 33 H 1.09003 * 113.86135 * 205.80698 * 21 9 7 34 34 H 1.08993 * 113.87003 * 337.50633 * 21 9 7 35 35 H 1.08998 * 113.86538 * 221.66406 * 23 22 21 36 36 H 1.08998 * 113.86159 * 89.95694 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1973 0.1075 9 6 1.2585 -2.4947 -0.1518 10 6 0.5847 -2.6420 -1.5176 11 8 1.5666 -2.4342 -2.5667 12 6 1.1339 -2.5291 -3.8337 13 8 -0.0269 -2.7781 -4.0588 14 6 2.0961 -2.3263 -4.9758 15 1 2.9426 -3.0039 -4.8649 16 6 2.5957 -0.8786 -4.9732 17 8 3.4196 -0.6643 -6.1230 18 6 2.7543 -0.9289 -7.3617 19 6 2.2547 -2.3766 -7.3643 20 8 1.4307 -2.5909 -6.2144 21 6 2.0675 -3.7326 0.2794 22 8 1.4695 -3.5316 1.5758 23 6 0.3351 -2.8240 1.0362 24 1 -0.4850 0.8400 0.0004 25 1 -0.2102 -1.9023 -1.6121 26 1 0.1623 -3.6428 -1.6081 27 1 1.7438 -0.1993 -5.0036 28 1 3.1767 -0.6954 -4.0693 29 1 3.4501 -0.7823 -8.1876 30 1 1.9077 -0.2513 -7.4725 31 1 3.1065 -3.0560 -7.3338 32 1 1.6740 -2.5610 -8.2680 33 1 1.7570 -4.6551 -0.2112 34 1 3.1468 -3.5817 0.2634 35 1 0.0404 -1.9523 1.6205 36 1 -0.5043 -3.4691 0.7768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345269018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:42 Heat of formation + Delta-G solvation = -177.988964 kcal Electronic energy + Delta-G solvation = -22015.444745 eV Core-core repulsion = 18467.015077 eV Total energy + Delta-G solvation = -3548.429669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48882 -39.51253 -38.86403 -36.28611 -35.56476 -32.97418 -31.96386 -30.00690 -28.37433 -25.63020 -25.38416 -25.01456 -24.09438 -22.04031 -20.42748 -19.06325 -17.54901 -17.10658 -16.76673 -16.30924 -16.10344 -15.78337 -15.43900 -15.19498 -14.82269 -14.59827 -14.38276 -14.23180 -13.61256 -13.49240 -12.79868 -12.35267 -12.16905 -12.00533 -11.72891 -11.61311 -11.05129 -10.97662 -10.79423 -10.69437 -10.51791 -10.09819 -9.99736 -9.59336 -9.45155 -9.32273 -9.11462 -8.81001 -8.34181 -6.22257 -4.25113 2.59450 2.68988 3.21551 3.30909 3.34834 3.57020 3.99204 4.29820 4.40170 4.78481 4.84561 4.86963 4.91214 4.97058 5.13103 5.20165 5.35452 5.45409 5.59950 5.78928 5.84714 5.99698 6.14835 6.26150 6.33313 6.48781 6.75471 6.80108 6.91664 7.05998 7.24584 7.25552 7.32632 7.74618 8.12342 8.34715 8.72796 9.38872 10.86184 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.018756 B = 0.006402 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.505553 B = 4372.490426 C = 5286.217245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.486 4.486 8 H 0.068 0.932 9 C 0.032 3.968 10 C 0.084 3.916 11 O -0.325 6.325 12 C 0.460 3.540 13 O -0.499 6.499 14 C 0.066 3.934 15 H 0.104 0.896 16 C 0.039 3.961 17 O -0.372 6.372 18 C 0.018 3.982 19 C 0.026 3.974 20 O -0.356 6.356 21 C 0.028 3.972 22 O -0.388 6.388 23 C 0.051 3.949 24 H 0.265 0.735 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 -2.867 -11.962 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.523 4.523 8 H 0.086 0.914 9 C 0.031 3.969 10 C 0.010 3.990 11 O -0.240 6.240 12 C 0.301 3.699 13 O -0.387 6.387 14 C 0.007 3.993 15 H 0.122 0.878 16 C -0.038 4.038 17 O -0.291 6.291 18 C -0.059 4.059 19 C -0.051 4.051 20 O -0.275 6.275 21 C -0.049 4.049 22 O -0.307 6.307 23 C -0.026 4.026 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.197 -2.882 -11.699 12.759 hybrid contribution 0.030 0.868 -0.316 0.924 sum 4.227 -2.014 -12.015 12.896 Atomic orbital electron populations 1.69896 1.05951 1.27201 1.49522 1.24963 0.94923 0.99353 0.94390 0.86454 0.80341 0.83144 0.77711 1.19396 1.20854 1.20913 1.20592 0.93511 0.88215 1.49992 0.91421 1.21149 0.92745 0.94762 0.88241 1.23540 0.90910 0.99063 0.85453 1.86508 1.43596 1.80321 1.13564 1.22656 0.87648 0.74741 0.84864 1.90640 1.18973 1.43447 1.85622 1.22041 0.93986 0.99439 0.83852 0.87803 1.23192 0.96958 0.93275 0.90412 1.88138 1.38531 1.88697 1.13702 1.23308 0.98682 0.96110 0.87768 1.23339 0.96075 0.96443 0.89244 1.88183 1.37973 1.88884 1.12476 1.24100 0.99281 0.97316 0.84202 1.89499 1.37266 1.77722 1.26211 1.23923 0.88516 0.94323 0.95847 0.92551 0.89519 0.94224 0.91278 0.85403 0.87537 0.91847 0.91759 0.87240 0.92834 0.90296 0.88147 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 11.31 55.43 0.63 -22.95 16 2 C 0.07 1.71 5.25 -17.82 -0.09 1.62 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.49 -12.45 7.92 -34.44 -0.27 -12.73 16 8 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.03 0.74 0.62 -154.58 -0.10 0.65 16 10 C 0.08 1.90 4.67 37.16 0.17 2.08 16 11 O -0.32 -6.89 9.82 -39.24 -0.39 -7.28 16 12 C 0.46 9.09 7.29 36.01 0.26 9.36 16 13 O -0.50 -11.31 16.26 -25.46 -0.41 -11.72 16 14 C 0.07 1.03 3.37 -27.80 -0.09 0.94 16 15 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 16 C 0.04 0.57 6.32 37.23 0.24 0.81 16 17 O -0.37 -5.01 10.85 -48.80 -0.53 -5.54 16 18 C 0.02 0.19 7.05 37.23 0.26 0.45 16 19 C 0.03 0.27 7.05 37.23 0.26 0.53 16 20 O -0.36 -5.48 10.03 -62.53 -0.63 -6.11 16 21 C 0.03 0.59 8.35 37.61 0.31 0.91 16 22 O -0.39 -9.09 12.40 -35.23 -0.44 -9.53 16 23 C 0.05 1.18 7.91 37.61 0.30 1.48 16 24 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 25 H 0.09 2.19 7.21 -51.93 -0.37 1.82 16 26 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.01 8.03 -51.93 -0.42 0.59 16 34 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 35 H 0.10 2.51 7.36 -51.93 -0.38 2.13 16 36 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -30.23 307.28 -5.84 -36.07 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.94 Total: 1.06 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 1.25 Total: 6.07 kcal Atomic # 7 Polarization: -23.58 SS G_CDS: 0.63 Total: -22.95 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -2.39 Total: -40.18 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.23 -5.84 -36.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345269018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.915 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds