Wall clock time and date at job start Mon Mar 30 2020 00:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00214 * 2 1 4 4 H 1.48496 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47152 * 299.99918 * 3 2 1 6 6 H 1.48496 * 109.46906 * 59.99733 * 3 2 1 7 7 C 1.37881 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99538 * 186.63401 * 7 2 1 9 9 C 1.50697 * 120.00067 * 6.63219 * 7 2 1 10 10 C 1.53002 * 112.99966 * 65.40016 * 9 7 2 11 11 O 1.45197 * 109.47199 * 53.51852 * 10 9 7 12 12 C 1.34222 * 116.99787 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00421 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00001 * 180.02562 * 12 11 10 15 15 H 1.08993 * 109.57794 * 54.83071 * 14 12 11 16 16 C 1.53150 * 109.52144 * 294.66949 * 14 12 11 17 17 O 1.43068 * 109.15030 * 184.78420 * 16 14 12 18 18 C 1.43077 * 113.59412 * 57.95633 * 17 16 14 19 19 C 1.53140 * 109.14893 * 302.04583 * 18 17 16 20 20 O 1.43077 * 109.52438 * 175.00166 * 14 12 11 21 21 C 1.54035 * 113.92220 * 197.33274 * 9 7 2 22 22 O 1.44177 * 85.52116 * 91.65988 * 21 9 7 23 23 C 1.44179 * 93.33786 * 24.19081 * 22 21 9 24 24 H 0.96998 * 119.99776 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47140 * 293.51440 * 10 9 7 26 26 H 1.09004 * 109.46354 * 173.52055 * 10 9 7 27 27 H 1.09000 * 109.52048 * 304.69159 * 16 14 12 28 28 H 1.09003 * 109.52049 * 64.87897 * 16 14 12 29 29 H 1.08995 * 109.53088 * 182.14581 * 18 17 16 30 30 H 1.09000 * 109.52602 * 61.94278 * 18 17 16 31 31 H 1.08998 * 109.52567 * 295.40995 * 19 18 17 32 32 H 1.08997 * 109.58200 * 175.24437 * 19 18 17 33 33 H 1.09003 * 113.86135 * 205.80698 * 21 9 7 34 34 H 1.08993 * 113.87003 * 337.50633 * 21 9 7 35 35 H 1.08998 * 113.86538 * 221.66406 * 23 22 21 36 36 H 1.08998 * 113.86159 * 89.95694 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1973 0.1075 9 6 1.2585 -2.4947 -0.1518 10 6 0.5847 -2.6420 -1.5176 11 8 1.5666 -2.4342 -2.5667 12 6 1.1339 -2.5291 -3.8337 13 8 -0.0269 -2.7781 -4.0588 14 6 2.0961 -2.3263 -4.9758 15 1 2.9426 -3.0039 -4.8649 16 6 2.5957 -0.8786 -4.9732 17 8 3.4196 -0.6643 -6.1230 18 6 2.7543 -0.9289 -7.3617 19 6 2.2547 -2.3766 -7.3643 20 8 1.4307 -2.5909 -6.2144 21 6 2.0675 -3.7326 0.2794 22 8 1.4695 -3.5316 1.5758 23 6 0.3351 -2.8240 1.0362 24 1 -0.4850 0.8400 0.0004 25 1 -0.2102 -1.9023 -1.6121 26 1 0.1623 -3.6428 -1.6081 27 1 1.7438 -0.1993 -5.0036 28 1 3.1767 -0.6954 -4.0693 29 1 3.4501 -0.7823 -8.1876 30 1 1.9077 -0.2513 -7.4725 31 1 3.1065 -3.0560 -7.3338 32 1 1.6740 -2.5610 -8.2680 33 1 1.7570 -4.6551 -0.2112 34 1 3.1468 -3.5817 0.2634 35 1 0.0404 -1.9523 1.6205 36 1 -0.5043 -3.4691 0.7768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345269018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:42 Heat of formation + Delta-G solvation = -198.434403 kcal Electronic energy + Delta-G solvation = -22016.331326 eV Core-core repulsion = 18467.015077 eV Total energy + Delta-G solvation = -3549.316249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88349 -41.09593 -40.35067 -37.61498 -36.98431 -34.89691 -33.10389 -31.77343 -29.44292 -27.37576 -27.12088 -26.49360 -25.65727 -23.15530 -21.82192 -20.90138 -18.96069 -18.60317 -18.03123 -17.87786 -17.42143 -17.07147 -16.90146 -16.64298 -16.28716 -16.20989 -16.10415 -15.95343 -14.86783 -14.64662 -14.40209 -13.92259 -13.78261 -13.45696 -13.28340 -12.88397 -12.70031 -12.60073 -12.35222 -12.09857 -11.85586 -11.80413 -11.58972 -11.30071 -11.18539 -10.92471 -10.71093 -10.36765 -10.19865 -8.18475 -6.26307 1.04289 1.32460 1.40790 1.45441 1.55261 2.41328 2.55892 2.86051 3.01452 3.23189 3.32294 3.55854 3.74325 3.92112 4.05595 4.12742 4.20406 4.25130 4.44573 4.45378 4.48918 4.55676 4.57816 4.73575 4.76775 4.78812 5.12953 5.21070 5.47277 5.49595 5.57534 5.73911 5.76544 5.83731 6.22718 6.70819 6.75480 7.39854 8.88828 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.018756 B = 0.006402 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.505553 B = 4372.490426 C = 5286.217245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.497 4.497 8 H 0.062 0.938 9 C 0.016 3.984 10 C 0.094 3.906 11 O -0.329 6.329 12 C 0.458 3.542 13 O -0.533 6.533 14 C 0.076 3.924 15 H 0.132 0.868 16 C 0.045 3.955 17 O -0.379 6.379 18 C 0.012 3.988 19 C 0.020 3.980 20 O -0.384 6.384 21 C 0.038 3.962 22 O -0.403 6.403 23 C 0.054 3.946 24 H 0.263 0.737 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.143 0.857 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.143 -3.314 -13.503 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.535 4.535 8 H 0.080 0.920 9 C 0.016 3.984 10 C 0.020 3.980 11 O -0.244 6.244 12 C 0.301 3.699 13 O -0.423 6.423 14 C 0.017 3.983 15 H 0.149 0.851 16 C -0.033 4.033 17 O -0.297 6.297 18 C -0.064 4.064 19 C -0.055 4.055 20 O -0.304 6.304 21 C -0.039 4.039 22 O -0.323 6.323 23 C -0.023 4.023 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.160 0.840 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.726 -3.333 -13.256 14.819 hybrid contribution -0.436 0.979 0.064 1.074 sum 5.290 -2.354 -13.192 14.407 Atomic orbital electron populations 1.69995 1.06972 1.27583 1.50358 1.25585 0.95560 1.01988 0.94318 0.85643 0.79639 0.79908 0.77429 1.18621 1.20743 1.21038 1.20813 0.93423 0.89475 1.49755 0.91967 1.21220 0.93416 0.95196 0.88616 1.23236 0.90288 0.98668 0.85806 1.86506 1.43131 1.80520 1.14218 1.23546 0.88045 0.73246 0.85076 1.90617 1.20703 1.45089 1.85897 1.22030 0.93048 1.00492 0.82717 0.85117 1.23021 0.96523 0.92410 0.91309 1.88133 1.38618 1.88733 1.14264 1.23610 0.99537 0.96011 0.87274 1.23698 0.96740 0.96847 0.88248 1.88148 1.39801 1.89156 1.13306 1.24212 0.99535 0.97312 0.82820 1.89472 1.37502 1.77744 1.27536 1.23832 0.89179 0.93995 0.95278 0.92764 0.92754 0.92868 0.92784 0.85636 0.83965 0.92166 0.89939 0.84623 0.89973 0.89408 0.90641 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.23 11.31 21.45 0.24 -48.99 16 2 C 0.03 1.33 5.25 84.66 0.44 1.78 16 3 Si 0.95 41.69 29.54 68.60 2.03 43.72 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.50 -25.50 7.92 25.60 0.20 -25.29 16 8 H 0.06 3.19 7.82 -2.91 -0.02 3.16 16 9 C 0.02 0.75 0.62 -52.23 -0.03 0.72 16 10 C 0.09 4.27 4.67 71.98 0.34 4.61 16 11 O -0.33 -13.84 9.82 -51.34 -0.50 -14.35 16 12 C 0.46 17.96 7.29 71.24 0.52 18.48 16 13 O -0.53 -24.36 16.26 28.35 0.46 -23.90 16 14 C 0.08 2.27 3.37 29.90 0.10 2.37 16 15 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 16 C 0.04 1.28 6.32 72.03 0.45 1.73 16 17 O -0.38 -9.36 10.85 -136.01 -1.48 -10.83 16 18 C 0.01 0.21 7.05 72.03 0.51 0.72 16 19 C 0.02 0.36 7.05 72.03 0.51 0.86 16 20 O -0.38 -11.17 10.03 -122.88 -1.23 -12.40 16 21 C 0.04 1.52 8.35 72.27 0.60 2.13 16 22 O -0.40 -18.50 12.40 -148.98 -1.85 -20.35 16 23 C 0.05 2.51 7.91 72.27 0.57 3.08 16 24 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 25 H 0.05 2.81 7.21 -2.39 -0.02 2.80 16 26 H 0.05 2.23 8.04 -2.38 -0.02 2.21 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 29 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 32 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 2.86 8.03 -2.39 -0.02 2.84 16 34 H 0.09 3.38 8.09 -2.39 -0.02 3.36 16 35 H 0.08 3.85 7.36 -2.39 -0.02 3.83 16 36 H 0.07 2.82 8.10 -2.39 -0.02 2.80 16 Total: -1.00 -64.93 307.28 2.97 -61.97 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.08 Total: 13.95 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 4.22 Total: 11.18 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.24 Total: -48.99 kcal Atomic # 8 Polarization: -77.23 SS G_CDS: -4.60 Total: -81.83 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -64.93 2.97 -61.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345269018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.466 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds