Wall clock time and date at job start Mon Mar 30 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47553 * 269.99642 * 3 2 1 5 5 H 1.48501 * 109.47447 * 29.99706 * 3 2 1 6 6 H 1.48506 * 109.47085 * 149.99919 * 3 2 1 7 7 C 1.37875 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00256 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47073 * 299.99933 * 9 7 2 11 11 O 1.45203 * 109.46765 * 179.97438 * 9 7 2 12 12 C 1.34233 * 116.99705 * 149.99969 * 11 9 7 13 13 O 1.20828 * 119.99727 * 0.02562 * 12 11 9 14 14 C 1.50698 * 119.99888 * 179.97438 * 12 11 9 15 15 H 1.08995 * 112.83102 * 51.62203 * 14 12 11 16 16 C 1.52265 * 113.81768 * 182.72999 * 14 12 11 17 17 C 1.50563 * 87.23336 * 114.46232 * 16 14 12 18 18 C 1.38813 * 147.30830 * 179.84459 * 17 16 14 19 19 C 1.38065 * 120.09273 * 180.29928 * 18 17 16 20 20 C 1.38235 * 119.97994 * 0.07837 * 19 18 17 21 21 C 1.38064 * 119.98180 * 359.97190 * 20 19 18 22 22 C 1.37725 * 92.76671 * 0.17339 * 17 16 14 23 23 C 1.52995 * 109.46810 * 60.00214 * 9 7 2 24 24 C 1.53004 * 117.49664 * 248.74254 * 23 9 7 25 25 C 1.53001 * 117.49583 * 180.08412 * 23 9 7 26 26 H 0.96998 * 119.99951 * 359.97438 * 1 2 3 27 27 H 1.08997 * 113.42941 * 359.90167 * 16 14 12 28 28 H 1.08993 * 113.74664 * 229.07155 * 16 14 12 29 29 H 1.08001 * 119.95436 * 0.37560 * 18 17 16 30 30 H 1.08001 * 120.01064 * 180.02562 * 19 18 17 31 31 H 1.08008 * 120.00690 * 179.97438 * 20 19 18 32 32 H 1.08002 * 119.95583 * 180.02562 * 21 20 19 33 33 H 1.08999 * 115.55447 * 34.41317 * 23 9 7 34 34 H 1.08998 * 117.49959 * 0.02562 * 24 23 9 35 35 H 1.09002 * 117.49549 * 145.02210 * 24 23 9 36 36 H 1.09004 * 117.50127 * 214.97432 * 25 23 9 37 37 H 1.09001 * 117.50558 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8902 11 8 2.1946 -3.6028 0.0005 12 6 1.8034 -4.7390 0.5986 13 8 0.7085 -4.8092 1.1048 14 6 2.7292 -5.9275 0.6375 15 1 3.7197 -5.6796 1.0188 16 6 2.1199 -7.1604 1.2910 17 6 2.2021 -7.8258 -0.0572 18 6 1.9693 -8.9666 -0.8130 19 6 2.2918 -8.9853 -2.1554 20 6 2.8488 -7.8673 -2.7476 21 6 3.0817 -6.7324 -1.9967 22 6 2.7570 -6.7120 -0.6473 23 6 0.3720 -2.5804 -1.2490 24 6 -1.1438 -2.5128 -1.0520 25 6 -0.4795 -3.8382 -1.4331 26 1 -0.4850 0.8400 0.0004 27 1 1.0988 -7.0062 1.6397 28 1 2.7602 -7.6198 2.0439 29 1 1.5342 -9.8403 -0.3507 30 1 2.1098 -9.8734 -2.7423 31 1 3.1016 -7.8816 -3.7976 32 1 3.5165 -5.8590 -2.4599 33 1 0.7842 -2.1162 -2.1449 34 1 -1.5147 -2.4100 -0.0323 35 1 -1.7287 -2.0044 -1.8185 36 1 -0.6278 -4.2012 -2.4502 37 1 -0.4131 -4.6080 -0.6643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:02 Heat of formation + Delta-G solvation = 1.991034 kcal Electronic energy + Delta-G solvation = -20697.138130 eV Core-core repulsion = 17599.654994 eV Total energy + Delta-G solvation = -3097.483136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98113 -39.15801 -36.54999 -35.23367 -34.80818 -32.64260 -30.75834 -28.25344 -27.43462 -25.39708 -23.23445 -22.17203 -21.23270 -20.97729 -19.66749 -19.05078 -17.40560 -16.73114 -16.53100 -15.86456 -15.32202 -14.97569 -14.56232 -14.40927 -13.91757 -13.51384 -13.01352 -12.91527 -12.62602 -12.35142 -12.09817 -11.89773 -11.47935 -11.32596 -11.02911 -10.98832 -10.89754 -10.49499 -10.40480 -10.27682 -9.82184 -9.78197 -9.37923 -9.02112 -8.77143 -8.64493 -8.55552 -8.41502 -6.14822 -4.22882 1.30372 1.40450 2.88449 3.25325 3.30994 3.33722 3.54156 3.84162 4.24200 4.35308 4.44068 4.55413 5.03280 5.04679 5.12681 5.16690 5.30625 5.55930 5.64852 5.69573 5.75412 5.88942 5.96457 6.05184 6.14425 6.18543 6.38735 6.40475 6.50633 6.58738 6.68196 6.76122 6.98861 7.01761 7.17806 7.27651 7.40815 7.62896 7.85580 8.11415 8.62176 8.89125 9.41728 10.91918 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.004948 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.465780 B = 5658.008269 C = 5766.321900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.248 3.752 10 H 0.048 0.952 11 O -0.347 6.347 12 C 0.472 3.528 13 O -0.513 6.513 14 C -0.046 4.046 15 H 0.127 0.873 16 C -0.061 4.061 17 C -0.120 4.120 18 C -0.100 4.100 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.079 4.079 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.227 4.227 26 H 0.264 0.736 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 -14.628 -2.214 15.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.196 3.804 10 H 0.066 0.934 11 O -0.262 6.262 12 C 0.315 3.685 13 O -0.403 6.403 14 C -0.065 4.065 15 H 0.144 0.856 16 C -0.098 4.098 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.134 4.134 20 C -0.140 4.140 21 C -0.097 4.097 22 C -0.114 4.114 23 C -0.133 4.133 24 C -0.161 4.161 25 C -0.264 4.264 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.011 -14.458 -2.093 15.150 hybrid contribution 0.243 1.059 -0.239 1.113 sum 4.255 -13.399 -2.332 14.251 Atomic orbital electron populations 1.70054 1.05750 1.26986 1.48079 1.24877 0.95023 0.99051 0.94552 0.86360 0.79697 0.82325 0.78246 1.20461 1.21035 1.19674 1.20905 0.93811 0.88372 1.53489 0.91305 1.20239 0.86134 0.80408 0.93623 0.93383 1.86488 1.49163 1.21855 1.68710 1.22629 0.86037 0.84568 0.75277 1.90566 1.22266 1.83287 1.44218 1.20809 1.00308 0.91643 0.93785 0.85553 1.21490 1.03795 0.90884 0.93624 1.21852 0.98370 0.94499 0.97259 1.20361 1.00954 0.96981 0.93471 1.20979 0.99428 0.98526 0.94420 1.20972 1.00315 0.93046 0.99693 1.20555 0.98813 0.98345 0.91962 1.21289 1.00342 0.95958 0.93813 1.22579 0.92880 0.97406 1.00415 1.22367 0.95554 0.96781 1.01378 1.23254 1.09404 0.92943 1.00801 0.92631 0.87182 0.88305 0.86359 0.85766 0.85612 0.85734 0.89413 0.89348 0.90809 0.91157 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.22 11.43 55.43 0.63 -23.59 16 2 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 3 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.65 8.88 -34.44 -0.31 -14.96 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.25 6.57 2.25 -27.89 -0.06 6.50 16 10 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 11 O -0.35 -8.24 9.84 -39.27 -0.39 -8.62 16 12 C 0.47 9.83 6.71 36.00 0.24 10.07 16 13 O -0.51 -11.74 12.75 -18.75 -0.24 -11.98 16 14 C -0.05 -0.73 4.38 -93.66 -0.41 -1.14 16 15 H 0.13 1.68 8.14 -51.93 -0.42 1.25 16 16 C -0.06 -0.81 7.70 -28.62 -0.22 -1.03 16 17 C -0.12 -1.66 7.42 -104.95 -0.78 -2.44 16 18 C -0.10 -1.20 10.06 -39.43 -0.40 -1.60 16 19 C -0.12 -1.29 10.04 -39.65 -0.40 -1.68 16 20 C -0.12 -1.46 10.04 -39.65 -0.40 -1.86 16 21 C -0.08 -1.12 10.06 -39.44 -0.40 -1.51 16 22 C -0.11 -1.74 6.90 -104.96 -0.72 -2.47 16 23 C -0.11 -2.83 4.47 -90.62 -0.41 -3.24 16 24 C -0.12 -2.90 9.04 -26.69 -0.24 -3.15 16 25 C -0.23 -5.06 9.80 -26.69 -0.26 -5.32 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.11 1.59 7.03 -51.93 -0.37 1.23 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.09 2.25 8.11 -51.93 -0.42 1.83 16 34 H 0.09 2.21 8.05 -51.93 -0.42 1.79 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.09 2.15 5.37 -51.93 -0.28 1.87 16 LS Contribution 314.34 15.07 4.74 4.74 Total: -1.00 -30.31 314.34 -9.90 -40.21 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.77 Total: 5.41 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -4.85 Total: -22.04 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.63 Total: -23.59 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.63 Total: -20.60 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.31 -9.90 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.196 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds