Wall clock time and date at job start Mon Mar 30 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47553 * 269.99642 * 3 2 1 5 5 H 1.48501 * 109.47447 * 29.99706 * 3 2 1 6 6 H 1.48506 * 109.47085 * 149.99919 * 3 2 1 7 7 C 1.37875 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00256 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47073 * 299.99933 * 9 7 2 11 11 O 1.45203 * 109.46765 * 179.97438 * 9 7 2 12 12 C 1.34233 * 116.99705 * 149.99969 * 11 9 7 13 13 O 1.20828 * 119.99727 * 0.02562 * 12 11 9 14 14 C 1.50698 * 119.99888 * 179.97438 * 12 11 9 15 15 H 1.08995 * 112.83102 * 51.62203 * 14 12 11 16 16 C 1.52265 * 113.81768 * 182.72999 * 14 12 11 17 17 C 1.50563 * 87.23336 * 114.46232 * 16 14 12 18 18 C 1.38813 * 147.30830 * 179.84459 * 17 16 14 19 19 C 1.38065 * 120.09273 * 180.29928 * 18 17 16 20 20 C 1.38235 * 119.97994 * 0.07837 * 19 18 17 21 21 C 1.38064 * 119.98180 * 359.97190 * 20 19 18 22 22 C 1.37725 * 92.76671 * 0.17339 * 17 16 14 23 23 C 1.52995 * 109.46810 * 60.00214 * 9 7 2 24 24 C 1.53004 * 117.49664 * 248.74254 * 23 9 7 25 25 C 1.53001 * 117.49583 * 180.08412 * 23 9 7 26 26 H 0.96998 * 119.99951 * 359.97438 * 1 2 3 27 27 H 1.08997 * 113.42941 * 359.90167 * 16 14 12 28 28 H 1.08993 * 113.74664 * 229.07155 * 16 14 12 29 29 H 1.08001 * 119.95436 * 0.37560 * 18 17 16 30 30 H 1.08001 * 120.01064 * 180.02562 * 19 18 17 31 31 H 1.08008 * 120.00690 * 179.97438 * 20 19 18 32 32 H 1.08002 * 119.95583 * 180.02562 * 21 20 19 33 33 H 1.08999 * 115.55447 * 34.41317 * 23 9 7 34 34 H 1.08998 * 117.49959 * 0.02562 * 24 23 9 35 35 H 1.09002 * 117.49549 * 145.02210 * 24 23 9 36 36 H 1.09004 * 117.50127 * 214.97432 * 25 23 9 37 37 H 1.09001 * 117.50558 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8902 11 8 2.1946 -3.6028 0.0005 12 6 1.8034 -4.7390 0.5986 13 8 0.7085 -4.8092 1.1048 14 6 2.7292 -5.9275 0.6375 15 1 3.7197 -5.6796 1.0188 16 6 2.1199 -7.1604 1.2910 17 6 2.2021 -7.8258 -0.0572 18 6 1.9693 -8.9666 -0.8130 19 6 2.2918 -8.9853 -2.1554 20 6 2.8488 -7.8673 -2.7476 21 6 3.0817 -6.7324 -1.9967 22 6 2.7570 -6.7120 -0.6473 23 6 0.3720 -2.5804 -1.2490 24 6 -1.1438 -2.5128 -1.0520 25 6 -0.4795 -3.8382 -1.4331 26 1 -0.4850 0.8400 0.0004 27 1 1.0988 -7.0062 1.6397 28 1 2.7602 -7.6198 2.0439 29 1 1.5342 -9.8403 -0.3507 30 1 2.1098 -9.8734 -2.7423 31 1 3.1016 -7.8816 -3.7976 32 1 3.5165 -5.8590 -2.4599 33 1 0.7842 -2.1162 -2.1449 34 1 -1.5147 -2.4100 -0.0323 35 1 -1.7287 -2.0044 -1.8185 36 1 -0.6278 -4.2012 -2.4502 37 1 -0.4131 -4.6080 -0.6643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:02 Heat of formation + Delta-G solvation = -12.283716 kcal Electronic energy + Delta-G solvation = -20697.757129 eV Core-core repulsion = 17599.654994 eV Total energy + Delta-G solvation = -3098.102136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.24928 -40.70478 -38.30612 -36.80519 -36.24146 -34.72741 -31.73185 -30.12023 -28.66923 -26.69371 -25.13654 -23.40556 -23.09691 -22.22444 -21.33127 -20.62986 -19.06285 -18.49519 -17.82612 -17.56687 -16.81149 -16.45025 -16.17941 -15.76378 -15.48698 -14.98966 -14.54830 -14.09752 -13.92945 -13.72299 -13.51008 -13.27224 -13.12896 -12.91159 -12.85652 -12.80187 -12.31505 -12.18882 -11.95980 -11.79816 -11.65948 -11.39074 -11.24295 -10.96990 -10.64010 -10.45986 -9.76477 -9.57295 -8.22856 -6.40196 0.29719 0.43337 1.26639 1.42070 1.43202 1.53905 1.96584 2.41791 2.82301 3.04262 3.14941 3.20083 3.39981 3.44145 3.96151 4.06849 4.17375 4.21539 4.25994 4.26771 4.40826 4.61116 4.67748 4.71816 4.75748 4.80639 4.93032 4.98264 5.07425 5.14964 5.21889 5.34844 5.44978 5.46826 5.54168 5.56895 5.73570 5.82789 6.05745 6.11795 6.62262 6.96169 7.29677 8.83573 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.004948 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.465780 B = 5658.008269 C = 5766.321900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.063 0.937 9 C 0.254 3.746 10 H 0.008 0.992 11 O -0.359 6.359 12 C 0.467 3.533 13 O -0.540 6.540 14 C -0.049 4.049 15 H 0.147 0.853 16 C -0.051 4.051 17 C -0.128 4.128 18 C -0.104 4.104 19 C -0.108 4.108 20 C -0.123 4.123 21 C -0.100 4.100 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.199 4.199 26 H 0.268 0.732 27 H 0.093 0.907 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 -16.187 -3.315 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.595 4.595 8 H 0.081 0.919 9 C 0.201 3.799 10 H 0.026 0.974 11 O -0.275 6.275 12 C 0.311 3.689 13 O -0.431 6.431 14 C -0.068 4.068 15 H 0.164 0.836 16 C -0.087 4.087 17 C -0.128 4.128 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.236 4.236 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.178 0.822 31 H 0.170 0.830 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.618 -16.041 -3.192 16.995 hybrid contribution 0.042 1.448 0.092 1.452 sum 4.660 -14.593 -3.100 15.629 Atomic orbital electron populations 1.70162 1.07021 1.28002 1.47863 1.25714 0.95945 1.02268 0.93629 0.85308 0.78431 0.77787 0.78606 1.19535 1.20307 1.19246 1.21168 0.93762 0.89683 1.54855 0.91882 1.19875 0.86168 0.81253 0.92616 0.97390 1.86482 1.48805 1.22539 1.69650 1.23697 0.86659 0.84685 0.73849 1.90539 1.23797 1.83614 1.45133 1.20996 1.00120 0.89921 0.95714 0.83571 1.21481 1.03347 0.89515 0.94405 1.21997 0.98573 0.94939 0.97244 1.20763 1.00349 0.97158 0.93900 1.21446 0.97543 0.99296 0.94313 1.21330 0.99508 0.92391 1.00823 1.20760 0.99718 0.99354 0.91961 1.21360 1.02659 0.96502 0.94260 1.22399 0.93357 0.99716 0.99391 1.22294 0.94780 0.97981 1.00693 1.23202 1.06768 0.91713 1.01911 0.92338 0.88822 0.84811 0.83720 0.82213 0.83031 0.86394 0.90344 0.91547 0.89146 0.88301 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.58 11.43 21.45 0.25 -50.33 16 2 C 0.03 1.47 5.30 84.65 0.45 1.91 16 3 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.56 -31.96 8.88 25.60 0.23 -31.73 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.25 14.05 2.25 29.85 0.07 14.11 16 10 H 0.01 0.52 6.91 -2.39 -0.02 0.50 16 11 O -0.36 -17.82 9.84 -51.45 -0.51 -18.33 16 12 C 0.47 20.13 6.71 71.24 0.48 20.60 16 13 O -0.54 -25.79 12.75 21.96 0.28 -25.51 16 14 C -0.05 -1.54 4.38 -12.76 -0.06 -1.59 16 15 H 0.15 3.86 8.14 -2.39 -0.02 3.84 16 16 C -0.05 -1.30 7.70 29.37 0.23 -1.08 16 17 C -0.13 -3.34 7.42 -20.08 -0.15 -3.49 16 18 C -0.10 -2.19 10.06 22.37 0.22 -1.96 16 19 C -0.11 -2.02 10.04 22.23 0.22 -1.79 16 20 C -0.12 -2.62 10.04 22.23 0.22 -2.39 16 21 C -0.10 -2.76 10.06 22.36 0.22 -2.54 16 22 C -0.15 -4.45 6.90 -20.08 -0.14 -4.58 16 23 C -0.13 -6.63 4.47 -10.79 -0.05 -6.68 16 24 C -0.12 -5.75 9.04 30.62 0.28 -5.47 16 25 C -0.20 -8.89 9.80 30.62 0.30 -8.59 16 26 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.09 2.71 7.03 -2.39 -0.02 2.70 16 28 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.08 4.12 8.11 -2.39 -0.02 4.10 16 34 H 0.07 3.45 8.05 -2.39 -0.02 3.43 16 35 H 0.09 3.97 8.14 -2.39 -0.02 3.95 16 36 H 0.10 3.84 8.14 -2.38 -0.02 3.82 16 37 H 0.08 3.87 5.37 -2.39 -0.01 3.86 16 Total: -1.00 -67.68 314.34 5.64 -62.04 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.07 Total: 22.26 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 2.53 Total: -35.26 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.25 Total: -50.33 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -0.23 Total: -43.83 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -67.68 5.64 -62.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.756 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds