Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48500 * 109.46968 * 240.00028 * 3 2 1 5 5 H 1.48498 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47182 * 119.99835 * 3 2 1 7 7 C 1.37875 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00249 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.47265 * 300.00123 * 9 7 2 11 11 O 1.45197 * 109.47403 * 180.02562 * 9 7 2 12 12 C 1.34227 * 117.00250 * 149.99774 * 11 9 7 13 13 O 1.20823 * 119.99979 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00201 * 179.97438 * 12 11 9 15 15 H 1.08997 * 112.88688 * 308.33521 * 14 12 11 16 16 C 1.52265 * 113.43441 * 177.08203 * 14 12 11 17 17 C 1.50563 * 87.23336 * 245.27787 * 16 14 12 18 18 C 1.38813 * 147.30830 * 179.84459 * 17 16 14 19 19 C 1.38066 * 120.09275 * 180.34245 * 18 17 16 20 20 C 1.38235 * 119.97996 * 0.03518 * 19 18 17 21 21 C 1.38064 * 119.98145 * 359.97190 * 20 19 18 22 22 C 1.37725 * 92.76671 * 0.17339 * 17 16 14 23 23 C 1.53003 * 109.47198 * 59.99904 * 9 7 2 24 24 C 1.52997 * 117.49762 * 248.62446 * 23 9 7 25 25 C 1.52998 * 117.49806 * 180.02562 * 23 9 7 26 26 H 0.97001 * 119.99729 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.42941 * 130.71721 * 16 14 12 28 28 H 1.08993 * 113.74664 * 359.88710 * 16 14 12 29 29 H 1.08001 * 119.95436 * 0.37560 * 18 17 16 30 30 H 1.08002 * 120.01097 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00952 * 179.97438 * 20 19 18 32 32 H 1.08002 * 119.95549 * 180.02562 * 21 20 19 33 33 H 1.08997 * 115.54904 * 34.33127 * 23 9 7 34 34 H 1.08995 * 117.50482 * 0.02562 * 24 23 9 35 35 H 1.09008 * 117.49979 * 145.02022 * 24 23 9 36 36 H 1.09003 * 117.49522 * 214.97697 * 25 23 9 37 37 H 1.09000 * 117.50406 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0018 12 6 1.8028 -4.7387 0.6000 13 8 0.7076 -4.8087 1.1055 14 6 2.7285 -5.9272 0.6402 15 1 3.1205 -6.1925 -0.3417 16 6 2.1624 -7.1098 1.4144 17 6 3.2781 -6.9024 2.4039 18 6 3.8904 -7.3181 3.5783 19 6 5.0095 -6.6589 4.0465 20 6 5.5209 -5.5827 3.3457 21 6 4.9127 -5.1681 2.1776 22 6 3.7877 -5.8301 1.7058 23 6 0.3718 -2.5804 -1.2490 24 6 -1.1440 -2.5157 -1.0517 25 6 -0.4786 -3.8388 -1.4338 26 1 -0.4850 0.8401 -0.0004 27 1 2.2290 -8.0538 0.8736 28 1 1.1714 -6.9283 1.8302 29 1 3.4912 -8.1589 4.1262 30 1 5.4846 -6.9832 4.9606 31 1 6.3960 -5.0663 3.7118 32 1 5.3129 -4.3275 1.6302 33 1 0.7835 -2.1150 -2.1445 34 1 -1.5150 -2.4147 -0.0318 35 1 -1.7300 -2.0074 -1.8175 36 1 -0.6266 -4.2013 -2.4511 37 1 -0.4114 -4.6090 -0.6654 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = 1.922265 kcal Electronic energy + Delta-G solvation = -20558.897854 eV Core-core repulsion = 17461.411736 eV Total energy + Delta-G solvation = -3097.486118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.97308 -39.16190 -36.55675 -35.22814 -34.81385 -32.64379 -30.74087 -28.25973 -27.41852 -25.38935 -23.22971 -22.16544 -21.26267 -20.96594 -19.64826 -19.06965 -17.41579 -16.75927 -16.51426 -15.70373 -15.37265 -15.07103 -14.62430 -14.36784 -13.86318 -13.40609 -13.10526 -12.98432 -12.47057 -12.41519 -12.09161 -11.88643 -11.48217 -11.35340 -11.04615 -10.94041 -10.89641 -10.51269 -10.38746 -10.28457 -9.84489 -9.78541 -9.38322 -9.03067 -8.75576 -8.65473 -8.54740 -8.41320 -6.14503 -4.22425 1.31736 1.42108 2.88517 3.27098 3.30773 3.32052 3.54620 3.85736 4.25205 4.35043 4.45599 4.55224 5.03023 5.05274 5.14250 5.17163 5.29816 5.56648 5.65834 5.70847 5.75767 5.90129 5.95269 6.05911 6.15198 6.17251 6.39067 6.40422 6.52582 6.55072 6.68130 6.77091 7.00218 7.00812 7.16022 7.27296 7.40131 7.62882 7.85828 8.11601 8.62272 8.89099 9.42005 10.92254 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.005670 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.576485 B = 4937.267662 C = 6067.716044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.249 3.751 10 H 0.048 0.952 11 O -0.347 6.347 12 C 0.472 3.528 13 O -0.513 6.513 14 C -0.046 4.046 15 H 0.127 0.873 16 C -0.061 4.061 17 C -0.120 4.120 18 C -0.100 4.100 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.079 4.079 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.230 4.230 26 H 0.264 0.736 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 -12.644 3.033 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.196 3.804 10 H 0.065 0.935 11 O -0.262 6.262 12 C 0.315 3.685 13 O -0.403 6.403 14 C -0.065 4.065 15 H 0.145 0.855 16 C -0.098 4.098 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.097 4.097 22 C -0.116 4.116 23 C -0.134 4.134 24 C -0.160 4.160 25 C -0.267 4.267 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.309 -12.463 3.175 14.325 hybrid contribution 0.314 1.117 -0.086 1.163 sum 6.623 -11.346 3.089 13.496 Atomic orbital electron populations 1.70039 1.05738 1.27091 1.48032 1.24872 0.95028 0.99029 0.94558 0.86426 0.79393 0.82014 0.78821 1.20007 1.21087 1.20065 1.20857 0.93761 0.88392 1.53552 0.91392 1.20223 0.86126 0.80432 0.93576 0.93465 1.86484 1.49164 1.21928 1.68642 1.22646 0.85874 0.84805 0.75219 1.90563 1.22513 1.83291 1.43965 1.20828 0.92734 0.92818 1.00078 0.85520 1.21493 0.98243 0.97027 0.92999 1.21853 0.97511 0.97457 0.95226 1.20360 0.95926 1.00475 0.95032 1.20986 0.96274 0.96293 0.99796 1.20981 1.00418 0.97488 0.95108 1.20580 0.94156 0.99066 0.95879 1.21306 0.95714 0.97509 0.97089 1.22602 0.92934 0.97428 1.00468 1.22342 0.95519 0.96760 1.01409 1.23271 1.09483 0.93047 1.00862 0.92576 0.88388 0.87115 0.86348 0.85739 0.85555 0.85623 0.89290 0.89357 0.90770 0.90990 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.28 11.44 55.43 0.63 -23.65 16 2 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 3 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.71 8.87 -34.44 -0.31 -15.02 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.59 2.25 -27.88 -0.06 6.52 16 10 H 0.05 1.40 6.91 -51.92 -0.36 1.04 16 11 O -0.35 -8.25 9.85 -39.25 -0.39 -8.64 16 12 C 0.47 9.83 6.70 36.00 0.24 10.07 16 13 O -0.51 -11.74 12.73 -18.75 -0.24 -11.98 16 14 C -0.05 -0.72 4.40 -93.66 -0.41 -1.13 16 15 H 0.13 1.67 8.14 -51.93 -0.42 1.24 16 16 C -0.06 -0.81 7.68 -28.62 -0.22 -1.03 16 17 C -0.12 -1.70 7.42 -104.95 -0.78 -2.48 16 18 C -0.10 -1.23 10.06 -39.43 -0.40 -1.62 16 19 C -0.12 -1.32 10.04 -39.65 -0.40 -1.72 16 20 C -0.12 -1.50 10.04 -39.65 -0.40 -1.90 16 21 C -0.08 -1.15 10.06 -39.44 -0.40 -1.55 16 22 C -0.12 -1.82 6.90 -104.96 -0.72 -2.54 16 23 C -0.12 -2.84 4.48 -90.62 -0.41 -3.24 16 24 C -0.12 -2.85 9.05 -26.76 -0.24 -3.09 16 25 C -0.23 -4.94 9.80 -26.76 -0.26 -5.20 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.11 1.61 7.02 -51.93 -0.36 1.25 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.09 2.25 8.11 -51.93 -0.42 1.83 16 34 H 0.09 2.19 8.05 -51.93 -0.42 1.77 16 35 H 0.07 1.61 8.14 -51.92 -0.42 1.19 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.09 2.07 5.37 -51.93 -0.28 1.79 16 LS Contribution 314.30 15.07 4.74 4.74 Total: -1.00 -30.42 314.30 -9.90 -40.32 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.77 Total: 5.36 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -4.86 Total: -22.14 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.63 Total: -23.65 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.63 Total: -20.62 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.42 -9.90 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.246 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds