Wall clock time and date at job start Mon Mar 30 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48500 * 109.46968 * 240.00028 * 3 2 1 5 5 H 1.48498 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47182 * 119.99835 * 3 2 1 7 7 C 1.37875 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00249 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.47265 * 300.00123 * 9 7 2 11 11 O 1.45197 * 109.47403 * 180.02562 * 9 7 2 12 12 C 1.34227 * 117.00250 * 149.99774 * 11 9 7 13 13 O 1.20823 * 119.99979 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00201 * 179.97438 * 12 11 9 15 15 H 1.08997 * 112.88688 * 308.33521 * 14 12 11 16 16 C 1.52265 * 113.43441 * 177.08203 * 14 12 11 17 17 C 1.50563 * 87.23336 * 245.27787 * 16 14 12 18 18 C 1.38813 * 147.30830 * 179.84459 * 17 16 14 19 19 C 1.38066 * 120.09275 * 180.34245 * 18 17 16 20 20 C 1.38235 * 119.97996 * 0.03518 * 19 18 17 21 21 C 1.38064 * 119.98145 * 359.97190 * 20 19 18 22 22 C 1.37725 * 92.76671 * 0.17339 * 17 16 14 23 23 C 1.53003 * 109.47198 * 59.99904 * 9 7 2 24 24 C 1.52997 * 117.49762 * 248.62446 * 23 9 7 25 25 C 1.52998 * 117.49806 * 180.02562 * 23 9 7 26 26 H 0.97001 * 119.99729 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.42941 * 130.71721 * 16 14 12 28 28 H 1.08993 * 113.74664 * 359.88710 * 16 14 12 29 29 H 1.08001 * 119.95436 * 0.37560 * 18 17 16 30 30 H 1.08002 * 120.01097 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00952 * 179.97438 * 20 19 18 32 32 H 1.08002 * 119.95549 * 180.02562 * 21 20 19 33 33 H 1.08997 * 115.54904 * 34.33127 * 23 9 7 34 34 H 1.08995 * 117.50482 * 0.02562 * 24 23 9 35 35 H 1.09008 * 117.49979 * 145.02022 * 24 23 9 36 36 H 1.09003 * 117.49522 * 214.97697 * 25 23 9 37 37 H 1.09000 * 117.50406 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0018 12 6 1.8028 -4.7387 0.6000 13 8 0.7076 -4.8087 1.1055 14 6 2.7285 -5.9272 0.6402 15 1 3.1205 -6.1925 -0.3417 16 6 2.1624 -7.1098 1.4144 17 6 3.2781 -6.9024 2.4039 18 6 3.8904 -7.3181 3.5783 19 6 5.0095 -6.6589 4.0465 20 6 5.5209 -5.5827 3.3457 21 6 4.9127 -5.1681 2.1776 22 6 3.7877 -5.8301 1.7058 23 6 0.3718 -2.5804 -1.2490 24 6 -1.1440 -2.5157 -1.0517 25 6 -0.4786 -3.8388 -1.4338 26 1 -0.4850 0.8401 -0.0004 27 1 2.2290 -8.0538 0.8736 28 1 1.1714 -6.9283 1.8302 29 1 3.4912 -8.1589 4.1262 30 1 5.4846 -6.9832 4.9606 31 1 6.3960 -5.0663 3.7118 32 1 5.3129 -4.3275 1.6302 33 1 0.7835 -2.1150 -2.1445 34 1 -1.5150 -2.4147 -0.0318 35 1 -1.7300 -2.0074 -1.8175 36 1 -0.6266 -4.2013 -2.4511 37 1 -0.4114 -4.6090 -0.6654 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:03 Heat of formation + Delta-G solvation = -12.588236 kcal Electronic energy + Delta-G solvation = -20559.527076 eV Core-core repulsion = 17461.411736 eV Total energy + Delta-G solvation = -3098.115341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.25425 -40.71679 -38.29678 -36.79957 -36.25039 -34.73192 -31.74791 -30.12732 -28.67652 -26.69715 -25.13413 -23.40577 -23.08643 -22.22724 -21.30943 -20.64245 -19.09711 -18.47889 -17.89564 -17.39924 -16.84536 -16.55026 -16.27046 -15.69341 -15.43404 -14.92804 -14.63486 -14.08920 -13.94868 -13.71359 -13.51479 -13.26270 -13.14127 -12.93069 -12.87620 -12.77560 -12.29848 -12.19340 -11.95763 -11.82093 -11.66595 -11.38702 -11.24406 -10.95290 -10.62497 -10.45814 -9.78582 -9.58977 -8.23367 -6.40610 0.27697 0.41219 1.26458 1.40377 1.43393 1.50860 1.96804 2.40976 2.80460 3.03817 3.13100 3.22834 3.39049 3.43191 3.97039 4.10119 4.16557 4.19644 4.25311 4.29729 4.42088 4.60543 4.68246 4.70860 4.78877 4.80205 4.91976 4.98481 5.10132 5.13319 5.24094 5.38344 5.44694 5.47078 5.53389 5.54871 5.71488 5.82808 6.04027 6.12010 6.61416 6.96060 7.29035 8.82776 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.005670 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.576485 B = 4937.267662 C = 6067.716044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.061 0.939 9 C 0.255 3.745 10 H 0.004 0.996 11 O -0.359 6.359 12 C 0.466 3.534 13 O -0.539 6.539 14 C -0.046 4.046 15 H 0.151 0.849 16 C -0.049 4.049 17 C -0.128 4.128 18 C -0.104 4.104 19 C -0.109 4.109 20 C -0.124 4.124 21 C -0.103 4.103 22 C -0.154 4.154 23 C -0.135 4.135 24 C -0.122 4.122 25 C -0.198 4.198 26 H 0.268 0.732 27 H 0.136 0.864 28 H 0.095 0.905 29 H 0.147 0.853 30 H 0.161 0.839 31 H 0.152 0.848 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.936 -13.834 3.340 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.595 4.595 8 H 0.079 0.921 9 C 0.202 3.798 10 H 0.022 0.978 11 O -0.275 6.275 12 C 0.311 3.689 13 O -0.431 6.431 14 C -0.065 4.065 15 H 0.169 0.831 16 C -0.086 4.086 17 C -0.128 4.128 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.142 4.142 21 C -0.121 4.121 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.235 4.235 26 H 0.077 0.923 27 H 0.154 0.846 28 H 0.113 0.887 29 H 0.165 0.835 30 H 0.179 0.821 31 H 0.169 0.831 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.439 -13.675 3.482 15.953 hybrid contribution -0.006 1.434 -0.083 1.436 sum 7.434 -12.241 3.399 14.720 Atomic orbital electron populations 1.70152 1.06976 1.28047 1.47801 1.25706 0.95961 1.02236 0.93665 0.85391 0.78256 0.77621 0.79053 1.19097 1.20140 1.19726 1.21131 0.93685 0.89811 1.54923 0.92069 1.19846 0.86124 0.81221 0.92626 0.97816 1.86479 1.48848 1.22619 1.69553 1.23716 0.86432 0.84958 0.73831 1.90537 1.24020 1.83678 1.44821 1.21027 0.92306 0.91090 1.02029 0.83140 1.21488 0.97019 0.97436 0.92636 1.22053 0.97632 0.97209 0.95955 1.20783 0.95902 1.01171 0.94342 1.21460 0.95579 0.95134 1.00474 1.21339 1.00925 0.97822 0.94118 1.20791 0.94718 0.99411 0.97221 1.21451 0.96730 0.99254 0.97939 1.22403 0.93363 1.00290 0.99301 1.22261 0.94679 0.98434 1.00593 1.23274 1.06107 0.91657 1.02434 0.92331 0.84609 0.88706 0.83548 0.82132 0.83079 0.86491 0.90132 0.91809 0.89155 0.87557 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.79 11.44 21.45 0.25 -50.55 16 2 C 0.03 1.47 5.30 84.65 0.45 1.92 16 3 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.56 -32.26 8.87 25.60 0.23 -32.03 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.48 16 9 C 0.25 14.13 2.25 29.85 0.07 14.20 16 10 H 0.00 0.26 6.91 -2.38 -0.02 0.24 16 11 O -0.36 -17.85 9.85 -51.39 -0.51 -18.35 16 12 C 0.47 20.07 6.70 71.23 0.48 20.54 16 13 O -0.54 -25.70 12.73 21.97 0.28 -25.42 16 14 C -0.05 -1.44 4.40 -12.76 -0.06 -1.50 16 15 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 16 C -0.05 -1.26 7.68 29.37 0.23 -1.03 16 17 C -0.13 -3.45 7.42 -20.08 -0.15 -3.60 16 18 C -0.10 -2.28 10.06 22.37 0.22 -2.05 16 19 C -0.11 -2.15 10.04 22.23 0.22 -1.93 16 20 C -0.12 -2.84 10.04 22.23 0.22 -2.62 16 21 C -0.10 -3.03 10.06 22.36 0.22 -2.81 16 22 C -0.15 -4.79 6.90 -20.08 -0.14 -4.93 16 23 C -0.13 -6.79 4.48 -10.79 -0.05 -6.84 16 24 C -0.12 -5.76 9.05 30.58 0.28 -5.48 16 25 C -0.20 -8.45 9.80 30.58 0.30 -8.15 16 26 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.09 2.73 7.02 -2.39 -0.02 2.72 16 29 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 30 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.12 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.08 4.16 8.11 -2.39 -0.02 4.14 16 34 H 0.06 3.29 8.05 -2.39 -0.02 3.27 16 35 H 0.09 3.90 8.14 -2.38 -0.02 3.88 16 36 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 37 H 0.09 3.86 5.37 -2.39 -0.01 3.85 16 Total: -1.00 -68.58 314.30 5.64 -62.93 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.07 Total: 22.27 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 2.53 Total: -36.30 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.25 Total: -50.55 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -0.23 Total: -43.77 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.58 5.64 -62.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.346 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds