Wall clock time and date at job start Mon Mar 30 2020 01:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48493 * 109.47362 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47364 * 300.00508 * 3 2 1 6 6 H 1.48499 * 109.46942 * 60.00233 * 3 2 1 7 7 C 1.37880 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00417 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99505 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47027 * 60.00451 * 9 7 2 11 11 O 1.45200 * 109.46582 * 180.02562 * 9 7 2 12 12 C 1.34229 * 116.99712 * 209.99880 * 11 9 7 13 13 O 1.20828 * 120.00004 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00386 * 180.02562 * 12 11 9 15 15 H 1.09005 * 112.82879 * 51.61321 * 14 12 11 16 16 C 1.52255 * 113.83684 * 182.72187 * 14 12 11 17 17 C 1.50563 * 87.23622 * 114.45431 * 16 14 12 18 18 C 1.38805 * 147.30833 * 179.86689 * 17 16 14 19 19 C 1.38065 * 120.09057 * 180.39782 * 18 17 16 20 20 C 1.38230 * 119.98422 * 359.96963 * 19 18 17 21 21 C 1.38073 * 119.97941 * 0.02562 * 20 19 18 22 22 C 1.37724 * 92.76188 * 0.18453 * 17 16 14 23 23 C 1.53005 * 109.47104 * 299.99930 * 9 7 2 24 24 C 1.52996 * 117.49594 * 248.75035 * 23 9 7 25 25 C 1.52998 * 117.49628 * 180.08651 * 23 9 7 26 26 H 0.96993 * 120.00426 * 359.97438 * 1 2 3 27 27 H 1.09007 * 113.68827 * 359.84898 * 16 14 12 28 28 H 1.08992 * 113.48746 * 229.02995 * 16 14 12 29 29 H 1.07999 * 119.95359 * 0.36948 * 18 17 16 30 30 H 1.07999 * 120.00388 * 179.97438 * 19 18 17 31 31 H 1.07995 * 120.01430 * 179.97438 * 20 19 18 32 32 H 1.07995 * 119.95338 * 179.97438 * 21 20 19 33 33 H 1.09000 * 115.54801 * 34.42244 * 23 9 7 34 34 H 1.08998 * 117.50463 * 0.02562 * 24 23 9 35 35 H 1.09006 * 117.49295 * 145.02881 * 24 23 9 36 36 H 1.09000 * 117.49908 * 214.97825 * 25 23 9 37 37 H 1.09001 * 117.49985 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 8 2.1947 -3.6027 -0.0005 12 6 1.8035 -4.7390 -0.5985 13 8 0.7086 -4.8093 -1.1048 14 6 2.7293 -5.9274 -0.6375 15 1 3.1208 -6.1909 0.3450 16 6 2.1707 -7.1175 -1.4056 17 6 3.2815 -6.9045 -2.3995 18 6 3.8957 -7.3219 -3.5722 19 6 5.0149 -6.6625 -4.0400 20 6 5.5246 -5.5848 -3.3404 21 6 4.9145 -5.1686 -2.1738 22 6 3.7893 -5.8307 -1.7024 23 6 0.3719 -2.5805 1.2491 24 6 0.7540 -3.6085 2.3159 25 6 -0.4765 -3.8400 1.4351 26 1 -0.4850 0.8399 0.0004 27 1 1.1768 -6.9449 -1.8185 28 1 2.2462 -8.0593 -0.8622 29 1 3.4978 -8.1638 -4.1191 30 1 5.4919 -6.9887 -4.9524 31 1 6.4002 -5.0690 -3.7057 32 1 5.3133 -4.3269 -1.6273 33 1 -0.0498 -1.6348 1.5895 34 1 1.6319 -4.2265 2.1278 35 1 0.5831 -3.3392 3.3582 36 1 -1.4562 -3.7231 1.8984 37 1 -0.4080 -4.6109 0.6676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547437.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:05 Heat of formation + Delta-G solvation = 3.001730 kcal Electronic energy + Delta-G solvation = -20628.049270 eV Core-core repulsion = 17530.609961 eV Total energy + Delta-G solvation = -3097.439309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.00765 -39.28726 -36.65373 -35.20004 -34.70029 -32.82046 -30.75378 -28.30403 -27.44256 -25.42111 -23.32992 -22.21266 -21.47848 -21.02421 -19.71280 -18.88370 -17.30820 -16.88037 -16.61128 -15.68549 -15.54447 -15.16841 -14.69943 -14.41425 -13.88371 -13.34440 -13.11731 -12.99925 -12.43967 -12.39160 -12.14123 -11.92350 -11.52682 -11.37362 -11.10799 -10.99636 -10.93865 -10.58495 -10.47242 -10.32083 -10.06911 -9.82578 -9.50518 -9.15457 -8.76992 -8.56983 -8.53961 -8.44586 -6.20204 -4.27143 1.30330 1.40895 2.84569 3.22715 3.29463 3.33562 3.52687 3.84163 4.23253 4.32310 4.44006 4.53070 4.91272 5.04290 5.12557 5.13118 5.26317 5.54020 5.62931 5.68044 5.72406 5.84150 5.88575 6.02666 6.08051 6.12565 6.14809 6.39257 6.44359 6.51425 6.66378 6.75037 6.87095 6.99408 6.99523 7.17625 7.55516 7.57572 7.82025 8.09797 8.57932 8.85615 9.37349 10.87163 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.005751 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.717803 B = 4867.130398 C = 5932.369612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.517 4.517 8 H 0.070 0.930 9 C 0.247 3.753 10 H 0.052 0.948 11 O -0.346 6.346 12 C 0.470 3.530 13 O -0.510 6.510 14 C -0.046 4.046 15 H 0.126 0.874 16 C -0.061 4.061 17 C -0.120 4.120 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.079 4.079 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.194 4.194 25 C -0.210 4.210 26 H 0.266 0.734 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -12.766 -2.793 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.195 3.805 10 H 0.070 0.930 11 O -0.262 6.262 12 C 0.312 3.688 13 O -0.400 6.400 14 C -0.065 4.065 15 H 0.144 0.856 16 C -0.097 4.097 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.097 4.097 22 C -0.116 4.116 23 C -0.135 4.135 24 C -0.231 4.231 25 C -0.247 4.247 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.015 -12.592 -2.937 14.710 hybrid contribution 0.245 1.009 0.080 1.042 sum 7.261 -11.583 -2.857 13.965 Atomic orbital electron populations 1.69983 1.05906 1.27228 1.49156 1.24900 0.95042 0.99280 0.94630 0.86262 0.80003 0.82409 0.77756 1.19440 1.20750 1.20687 1.20980 0.93978 0.88304 1.52193 0.91136 1.20176 0.85989 0.80354 0.93999 0.93039 1.86496 1.49184 1.21947 1.68552 1.22668 0.85913 0.84858 0.75316 1.90578 1.22453 1.83290 1.43641 1.20813 0.92785 0.92807 1.00119 0.85637 1.21485 0.98350 0.96914 0.92998 1.21842 0.97515 0.97418 0.95233 1.20359 0.95879 1.00466 0.95074 1.20987 0.96259 0.96264 0.99799 1.20983 1.00410 0.97474 0.95108 1.20581 0.94133 0.99062 0.95883 1.21291 0.95718 0.97568 0.97066 1.23027 0.99261 0.93790 0.97447 1.22804 0.98515 1.05942 0.95875 1.23159 0.94511 1.03579 1.03481 0.92438 0.87162 0.88324 0.86327 0.85718 0.85535 0.85620 0.85234 0.89817 0.90379 0.90471 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 11.59 55.43 0.64 -24.30 16 2 C 0.06 1.75 5.20 -17.82 -0.09 1.65 16 3 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.35 8.90 -34.44 -0.31 -14.65 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.25 6.54 2.41 -27.88 -0.07 6.48 16 10 H 0.05 1.53 7.16 -51.93 -0.37 1.16 16 11 O -0.35 -8.12 8.38 -39.25 -0.33 -8.45 16 12 C 0.47 9.74 6.43 36.00 0.23 9.97 16 13 O -0.51 -11.70 12.77 -18.75 -0.24 -11.94 16 14 C -0.05 -0.72 4.38 -93.66 -0.41 -1.14 16 15 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 16 C -0.06 -0.81 7.69 -28.62 -0.22 -1.03 16 17 C -0.12 -1.69 7.42 -104.96 -0.78 -2.47 16 18 C -0.10 -1.22 10.06 -39.44 -0.40 -1.62 16 19 C -0.12 -1.31 10.04 -39.65 -0.40 -1.71 16 20 C -0.12 -1.49 10.04 -39.64 -0.40 -1.89 16 21 C -0.08 -1.15 10.06 -39.43 -0.40 -1.54 16 22 C -0.12 -1.81 6.90 -104.96 -0.72 -2.54 16 23 C -0.12 -2.88 5.27 -90.62 -0.48 -3.36 16 24 C -0.19 -4.06 9.80 -26.69 -0.26 -4.32 16 25 C -0.21 -4.57 9.85 -26.69 -0.26 -4.83 16 26 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.11 1.60 7.05 -51.92 -0.37 1.23 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.13 3.49 6.46 -51.93 -0.34 3.15 16 34 H 0.08 1.69 6.91 -51.93 -0.36 1.33 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.09 2.08 5.37 -51.93 -0.28 1.80 16 LS Contribution 311.92 15.07 4.70 4.70 Total: -1.00 -30.54 311.92 -9.85 -40.39 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.64 Total: 6.67 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -4.96 Total: -22.99 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.64 Total: -24.30 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.57 Total: -20.38 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.54 -9.85 -40.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547437.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.391 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds