Wall clock time and date at job start Mon Mar 30 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99497 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00609 * 3 2 1 5 5 H 1.48500 * 109.47256 * 30.00523 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00174 * 3 2 1 7 7 C 1.37873 * 120.00523 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 11 11 O 1.45206 * 109.47021 * 180.02562 * 9 7 2 12 12 C 1.34232 * 116.99890 * 209.99911 * 11 9 7 13 13 O 1.20827 * 119.99958 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99568 * 180.02562 * 12 11 9 15 15 H 1.08997 * 112.50650 * 309.67011 * 14 12 11 16 16 C 1.52891 * 113.16068 * 179.77244 * 14 12 11 17 17 C 1.51430 * 84.72764 * 244.77637 * 16 14 12 18 18 C 1.38951 * 145.52368 * 179.97438 * 17 16 14 19 19 C 1.37985 * 120.32106 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.17433 * 0.02562 * 19 18 17 21 21 C 1.38176 * 119.75451 * 359.92876 * 20 19 18 22 22 C 1.38238 * 120.12102 * 0.09650 * 21 20 19 23 23 C 1.53002 * 109.47389 * 300.00158 * 9 7 2 24 24 C 1.52999 * 117.49989 * 248.75118 * 23 9 7 25 25 C 1.52990 * 117.50203 * 180.08772 * 23 9 7 26 26 H 0.96991 * 120.00899 * 359.97438 * 1 2 3 27 27 H 1.08997 * 113.99027 * 358.72213 * 16 14 12 28 28 H 1.09001 * 113.98590 * 130.83169 * 16 14 12 29 29 H 1.07995 * 119.83939 * 0.06864 * 18 17 16 30 30 H 1.07997 * 119.90630 * 179.97438 * 19 18 17 31 31 H 1.08008 * 120.12259 * 179.97438 * 20 19 18 32 32 H 1.07998 * 119.93944 * 180.02562 * 21 20 19 33 33 H 1.08999 * 115.54665 * 34.41171 * 23 9 7 34 34 H 1.09002 * 117.49886 * 359.97438 * 24 23 9 35 35 H 1.08994 * 117.49912 * 145.01686 * 24 23 9 36 36 H 1.09001 * 117.50599 * 214.97823 * 25 23 9 37 37 H 1.09005 * 117.50105 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 8 2.1949 -3.6027 -0.0005 12 6 1.8037 -4.7390 -0.5985 13 8 0.7092 -4.8090 -1.1056 14 6 2.7297 -5.9273 -0.6374 15 1 3.7252 -5.6689 -0.9983 16 6 2.1254 -7.1374 -1.3502 17 6 2.2034 -7.8010 0.0087 18 6 1.9535 -8.9598 0.7336 19 6 2.2480 -9.0161 2.0805 20 6 2.7937 -7.9181 2.7188 21 6 3.0451 -6.7634 2.0028 22 6 2.7501 -6.7058 0.6535 23 6 0.3720 -2.5805 1.2490 24 6 0.7541 -3.6084 2.3159 25 6 -0.4763 -3.8400 1.4351 26 1 -0.4851 0.8399 0.0004 27 1 1.1082 -6.9786 -1.7082 28 1 2.7801 -7.5830 -2.0992 29 1 1.5275 -9.8209 0.2402 30 1 2.0507 -9.9200 2.6375 31 1 3.0235 -7.9629 3.7732 32 1 3.4719 -5.9040 2.4984 33 1 -0.0497 -1.6348 1.5895 34 1 1.6316 -4.2270 2.1274 35 1 0.5833 -3.3392 3.3582 36 1 -1.4560 -3.7232 1.8984 37 1 -0.4084 -4.6106 0.6672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:07 Heat of formation + Delta-G solvation = -11.307886 kcal Electronic energy + Delta-G solvation = -20858.836930 eV Core-core repulsion = 17760.777110 eV Total energy + Delta-G solvation = -3098.059820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.26051 -40.73146 -38.37092 -36.59224 -36.19701 -34.89390 -31.75548 -30.14139 -28.66147 -26.71884 -25.22939 -23.43285 -23.25537 -22.25647 -21.21152 -20.51612 -18.93392 -18.64447 -17.95252 -17.50665 -17.08584 -16.43172 -16.17706 -15.68798 -15.48364 -14.91890 -14.40263 -14.09990 -13.93982 -13.75728 -13.56577 -13.28636 -13.12683 -12.94509 -12.87139 -12.80300 -12.36368 -12.24251 -11.98980 -11.95164 -11.69595 -11.38111 -11.27647 -11.05824 -10.51024 -10.46282 -9.77618 -9.55787 -8.27894 -6.44766 0.30020 0.43144 1.24376 1.41347 1.43028 1.54533 1.97139 2.40788 2.82647 2.99699 3.07485 3.12716 3.38486 3.44054 3.93972 4.02766 4.16558 4.21438 4.23201 4.25402 4.25510 4.59795 4.69570 4.72474 4.78635 4.86825 4.91793 4.94720 4.98417 5.14976 5.21091 5.25575 5.47135 5.49262 5.54096 5.57089 5.72615 5.87154 6.05462 6.08488 6.59491 6.93563 7.25858 8.79650 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.028965 B = 0.005069 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.436956 B = 5522.605942 C = 5697.396213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.979 3.021 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.254 3.746 10 H 0.006 0.994 11 O -0.355 6.355 12 C 0.462 3.538 13 O -0.539 6.539 14 C -0.045 4.045 15 H 0.144 0.856 16 C -0.052 4.052 17 C -0.128 4.128 18 C -0.108 4.108 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.094 4.094 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.165 4.165 25 C -0.200 4.200 26 H 0.270 0.730 27 H 0.096 0.904 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 -16.407 3.668 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.201 3.799 10 H 0.024 0.976 11 O -0.271 6.271 12 C 0.306 3.694 13 O -0.430 6.430 14 C -0.064 4.064 15 H 0.161 0.839 16 C -0.089 4.089 17 C -0.128 4.128 18 C -0.126 4.126 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.112 4.112 22 C -0.148 4.148 23 C -0.163 4.163 24 C -0.201 4.201 25 C -0.237 4.237 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.176 0.824 31 H 0.172 0.828 32 H 0.139 0.861 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.651 -16.266 3.551 17.582 hybrid contribution -0.155 1.337 -0.190 1.359 sum 5.495 -14.930 3.361 16.260 Atomic orbital electron populations 1.70104 1.07452 1.28387 1.49149 1.25791 0.95871 1.02713 0.93630 0.85240 0.78547 0.77366 0.78616 1.19710 1.20120 1.18704 1.21229 0.93972 0.89582 1.53473 0.91492 1.19758 0.85990 0.81274 0.92900 0.97606 1.86491 1.48581 1.22459 1.69561 1.23858 0.86792 0.84790 0.73911 1.90549 1.23887 1.83607 1.44927 1.21239 1.00096 0.89811 0.95264 0.83867 1.21817 1.03336 0.89612 0.94090 1.22465 0.98611 0.94896 0.96871 1.20866 1.00279 0.97095 0.94350 1.21412 0.97766 0.99588 0.93998 1.21367 0.99266 0.92219 1.00943 1.20521 0.99783 0.99261 0.91639 1.21228 1.02726 0.96673 0.94201 1.22718 1.01162 0.93780 0.98599 1.22855 0.98077 1.03087 0.96120 1.23089 0.95692 1.01406 1.03506 0.92117 0.88578 0.84518 0.84007 0.82413 0.82838 0.86133 0.87731 0.89358 0.87965 0.88886 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.95 11.59 21.45 0.25 -52.71 16 2 C 0.02 1.12 5.20 84.65 0.44 1.55 16 3 Si 0.98 43.12 29.54 68.60 2.03 45.14 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.55 -31.23 8.90 25.60 0.23 -31.01 16 8 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 9 C 0.25 14.10 2.41 29.85 0.07 14.17 16 10 H 0.01 0.39 7.16 -2.38 -0.02 0.38 16 11 O -0.35 -17.32 8.38 -51.43 -0.43 -17.75 16 12 C 0.46 19.78 6.40 71.24 0.46 20.23 16 13 O -0.54 -25.87 12.72 21.96 0.28 -25.59 16 14 C -0.05 -1.41 4.26 -14.66 -0.06 -1.48 16 15 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 16 C -0.05 -1.32 7.91 30.04 0.24 -1.09 16 17 C -0.13 -3.35 7.32 -21.79 -0.16 -3.51 16 18 C -0.11 -2.29 10.05 22.38 0.22 -2.06 16 19 C -0.11 -2.05 10.03 22.21 0.22 -1.82 16 20 C -0.12 -2.50 10.06 22.25 0.22 -2.27 16 21 C -0.09 -2.52 10.04 22.26 0.22 -2.29 16 22 C -0.15 -4.39 7.05 -19.82 -0.14 -4.52 16 23 C -0.14 -7.41 5.27 -10.80 -0.06 -7.47 16 24 C -0.16 -7.01 9.80 30.62 0.30 -6.71 16 25 C -0.20 -9.08 9.85 30.62 0.30 -8.78 16 26 H 0.27 14.63 8.31 -92.72 -0.77 13.86 16 27 H 0.10 2.78 7.02 -2.39 -0.02 2.76 16 28 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.10 5.90 6.46 -2.39 -0.02 5.88 16 34 H 0.09 3.71 6.90 -2.39 -0.02 3.69 16 35 H 0.10 3.81 8.14 -2.39 -0.02 3.80 16 36 H 0.09 3.84 8.14 -2.39 -0.02 3.82 16 37 H 0.08 3.87 5.37 -2.38 -0.01 3.85 16 Total: -1.00 -68.73 311.92 5.71 -63.02 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 1.08 Total: 24.94 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 2.51 Total: -37.05 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.25 Total: -52.71 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.15 Total: -43.34 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -68.73 5.71 -63.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.712 kcal (2) G-P(sol) polarization free energy of solvation -68.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds