Wall clock time and date at job start Mon Mar 30 2020 01:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99747 * 2 1 4 4 H 1.48504 * 109.46952 * 239.99920 * 3 2 1 5 5 H 1.48497 * 109.47047 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47483 * 120.00201 * 3 2 1 7 7 C 1.37875 * 120.00740 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00776 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99544 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47560 * 59.99620 * 9 7 2 11 11 O 1.42904 * 109.47327 * 180.02562 * 9 7 2 12 12 C 1.34903 * 116.99919 * 210.00078 * 11 9 7 13 13 O 1.21621 * 120.00519 * 359.97438 * 12 11 9 14 14 C 1.46245 * 119.99712 * 180.02562 * 12 11 9 15 15 C 1.34914 * 119.99700 * 187.31561 * 14 12 11 16 16 C 1.47175 * 120.00205 * 10.19962 * 15 14 12 17 17 C 1.39859 * 120.16903 * 43.75937 * 16 15 14 18 18 C 1.37885 * 119.82166 * 179.97438 * 17 16 15 19 19 C 1.38407 * 120.17406 * 359.97438 * 18 17 16 20 20 C 1.38402 * 120.34749 * 0.02562 * 19 18 17 21 21 C 1.37892 * 120.17483 * 0.02562 * 20 19 18 22 22 C 1.53007 * 109.47480 * 299.99985 * 9 7 2 23 23 C 1.52996 * 117.50101 * 248.75104 * 22 9 7 24 24 C 1.52996 * 117.50318 * 180.08698 * 22 9 7 25 25 H 0.96996 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.99902 * 7.30509 * 14 12 11 27 27 H 1.07997 * 119.99730 * 190.20496 * 15 14 12 28 28 H 1.07991 * 120.08439 * 359.95212 * 17 16 15 29 29 H 1.07996 * 119.91137 * 179.97438 * 18 17 16 30 30 H 1.07994 * 119.82395 * 179.74021 * 19 18 17 31 31 H 1.08004 * 119.91453 * 179.97438 * 20 19 18 32 32 H 1.08001 * 120.08535 * 180.02562 * 21 20 19 33 33 H 1.09001 * 115.54621 * 34.41384 * 22 9 7 34 34 H 1.09003 * 117.49856 * 359.97438 * 23 22 9 35 35 H 1.08998 * 117.50091 * 145.01660 * 23 22 9 36 36 H 1.08994 * 117.49809 * 214.98139 * 24 22 9 37 37 H 1.09002 * 117.49686 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6241 -2.5575 -0.8879 11 8 2.1798 -3.5852 0.0027 12 6 1.7866 -4.7277 -0.5973 13 8 0.6846 -4.7990 -1.1069 14 6 2.6851 -5.8810 -0.6340 15 6 2.3550 -6.9704 -1.3582 16 6 1.2130 -6.9196 -2.2851 17 6 1.0320 -5.8102 -3.1173 18 6 -0.0402 -5.7704 -3.9834 19 6 -0.9357 -6.8246 -4.0309 20 6 -0.7634 -7.9260 -3.2106 21 6 0.3032 -7.9804 -2.3383 22 6 0.3720 -2.5794 1.2514 23 6 0.7540 -3.6064 2.3191 24 6 -0.4763 -3.8388 1.4386 25 1 -0.4851 0.8400 -0.0004 26 1 3.6128 -5.8605 -0.0816 27 1 2.9288 -7.8798 -1.2577 28 1 1.7299 -4.9869 -3.0814 29 1 -0.1816 -4.9143 -4.6263 30 1 -1.7758 -6.7856 -4.7083 31 1 -1.4667 -8.7446 -3.2531 32 1 0.4365 -8.8407 -1.6991 33 1 -0.0497 -1.6334 1.5910 34 1 1.6315 -4.2252 2.1312 35 1 0.5833 -3.3363 3.3612 36 1 -1.4560 -3.7214 1.9018 37 1 -0.4085 -4.6100 0.6713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347936818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:34 Heat of formation + Delta-G solvation = -6.622793 kcal Electronic energy + Delta-G solvation = -20753.502356 eV Core-core repulsion = 17655.645697 eV Total energy + Delta-G solvation = -3097.856659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06181 -38.70571 -36.57400 -34.74638 -33.62410 -32.78915 -30.67683 -29.64733 -27.85141 -24.48799 -23.10527 -22.26429 -21.65574 -21.36968 -19.48518 -18.72973 -17.39416 -16.74465 -16.29894 -15.83240 -15.31262 -14.75717 -14.65725 -14.24867 -13.84429 -13.69454 -13.22362 -12.88263 -12.61592 -12.47318 -12.18719 -11.51348 -11.37989 -11.10097 -10.97044 -10.93121 -10.91410 -10.56803 -10.30348 -10.05585 -9.90045 -9.57994 -9.44249 -9.10485 -8.58143 -8.47784 -8.40785 -7.92394 -6.17192 -4.24543 0.85498 1.71682 2.04034 3.26666 3.30549 3.32620 3.58276 3.77758 4.09175 4.35314 4.82111 4.96707 5.07576 5.15405 5.17123 5.30624 5.40105 5.63282 5.67332 5.82099 5.89202 6.08429 6.10612 6.15780 6.19051 6.29558 6.40595 6.49232 6.67759 6.72190 6.75555 6.83020 6.94220 7.05452 7.23000 7.23403 7.59710 7.62298 7.86846 8.14419 8.65798 8.91976 9.40329 10.89866 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.022549 B = 0.005303 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.462452 B = 5278.631856 C = 5565.039482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.069 0.931 9 C 0.246 3.754 10 H 0.050 0.950 11 O -0.342 6.342 12 C 0.472 3.528 13 O -0.497 6.497 14 C -0.176 4.176 15 C -0.034 4.034 16 C -0.075 4.075 17 C -0.034 4.034 18 C -0.130 4.130 19 C -0.109 4.109 20 C -0.139 4.139 21 C -0.101 4.101 22 C -0.116 4.116 23 C -0.195 4.195 24 C -0.209 4.209 25 H 0.266 0.734 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 -13.709 -3.882 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.192 3.808 10 H 0.068 0.932 11 O -0.258 6.258 12 C 0.318 3.682 13 O -0.389 6.389 14 C -0.195 4.195 15 C -0.052 4.052 16 C -0.075 4.075 17 C -0.052 4.052 18 C -0.148 4.148 19 C -0.128 4.128 20 C -0.157 4.157 21 C -0.119 4.119 22 C -0.135 4.135 23 C -0.232 4.232 24 C -0.246 4.246 25 H 0.076 0.924 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.591 -13.528 -4.009 14.199 hybrid contribution 0.150 1.016 0.286 1.066 sum 1.742 -12.512 -3.723 13.170 Atomic orbital electron populations 1.69969 1.05904 1.27354 1.49008 1.24893 0.95010 0.99233 0.94641 0.86393 0.79367 0.81844 0.78893 1.19990 1.21066 1.19921 1.20926 0.93833 0.88458 1.52412 0.91326 1.19697 0.86369 0.80839 0.93874 0.93218 1.86202 1.48693 1.21801 1.69058 1.21303 0.86410 0.84355 0.76146 1.90873 1.22269 1.83046 1.42694 1.22540 1.00447 0.92501 1.04017 1.22414 0.94105 0.96817 0.91912 1.18884 0.96114 0.95233 0.97223 1.21133 0.97018 0.94680 0.92381 1.20969 0.95381 0.98545 0.99876 1.21151 0.98627 0.93994 0.98981 1.20887 0.98421 0.98689 0.97662 1.21102 0.94863 0.97545 0.98418 1.23045 0.99287 0.93608 0.97532 1.22791 0.98598 1.06039 0.95784 1.23144 0.94327 1.03659 1.03505 0.92396 0.84150 0.84335 0.86750 0.86285 0.86620 0.86544 0.86416 0.85508 0.89822 0.90553 0.90752 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 11.59 55.43 0.64 -24.38 16 2 C 0.06 1.77 5.20 -17.82 -0.09 1.68 16 3 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.39 8.89 -34.44 -0.31 -14.70 16 8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.47 2.37 -27.88 -0.07 6.40 16 10 H 0.05 1.46 7.11 -51.93 -0.37 1.09 16 11 O -0.34 -7.97 8.29 -41.05 -0.34 -8.31 16 12 C 0.47 9.57 5.80 33.95 0.20 9.77 16 13 O -0.50 -10.94 9.16 -19.36 -0.18 -11.12 16 14 C -0.18 -2.65 10.05 -37.55 -0.38 -3.03 16 15 C -0.03 -0.44 9.81 -37.13 -0.36 -0.80 16 16 C -0.07 -1.11 4.55 -105.06 -0.48 -1.59 16 17 C -0.03 -0.56 6.58 -39.10 -0.26 -0.82 16 18 C -0.13 -1.99 10.03 -39.65 -0.40 -2.39 16 19 C -0.11 -1.49 10.04 -39.46 -0.40 -1.88 16 20 C -0.14 -1.78 10.03 -39.65 -0.40 -2.18 16 21 C -0.10 -1.35 9.80 -39.11 -0.38 -1.73 16 22 C -0.12 -2.91 5.27 -90.62 -0.48 -3.38 16 23 C -0.20 -4.20 9.79 -26.69 -0.26 -4.46 16 24 C -0.21 -4.69 9.84 -26.69 -0.26 -4.95 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.11 2.00 6.98 -52.49 -0.37 1.64 16 29 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 3.47 6.46 -51.93 -0.34 3.13 16 34 H 0.08 1.76 6.92 -51.93 -0.36 1.40 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.09 2.19 5.32 -51.93 -0.28 1.91 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -30.38 311.50 -9.16 -39.54 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.63 Total: 7.73 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -4.32 Total: -24.07 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.64 Total: -24.38 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.52 Total: -19.43 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.38 -9.16 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.917 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds