Wall clock time and date at job start Mon Mar 30 2020 01:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99747 * 2 1 4 4 H 1.48504 * 109.46952 * 239.99920 * 3 2 1 5 5 H 1.48497 * 109.47047 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47483 * 120.00201 * 3 2 1 7 7 C 1.37875 * 120.00740 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00776 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99544 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47560 * 59.99620 * 9 7 2 11 11 O 1.42904 * 109.47327 * 180.02562 * 9 7 2 12 12 C 1.34903 * 116.99919 * 210.00078 * 11 9 7 13 13 O 1.21621 * 120.00519 * 359.97438 * 12 11 9 14 14 C 1.46245 * 119.99712 * 180.02562 * 12 11 9 15 15 C 1.34914 * 119.99700 * 187.31561 * 14 12 11 16 16 C 1.47175 * 120.00205 * 10.19962 * 15 14 12 17 17 C 1.39859 * 120.16903 * 43.75937 * 16 15 14 18 18 C 1.37885 * 119.82166 * 179.97438 * 17 16 15 19 19 C 1.38407 * 120.17406 * 359.97438 * 18 17 16 20 20 C 1.38402 * 120.34749 * 0.02562 * 19 18 17 21 21 C 1.37892 * 120.17483 * 0.02562 * 20 19 18 22 22 C 1.53007 * 109.47480 * 299.99985 * 9 7 2 23 23 C 1.52996 * 117.50101 * 248.75104 * 22 9 7 24 24 C 1.52996 * 117.50318 * 180.08698 * 22 9 7 25 25 H 0.96996 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.99902 * 7.30509 * 14 12 11 27 27 H 1.07997 * 119.99730 * 190.20496 * 15 14 12 28 28 H 1.07991 * 120.08439 * 359.95212 * 17 16 15 29 29 H 1.07996 * 119.91137 * 179.97438 * 18 17 16 30 30 H 1.07994 * 119.82395 * 179.74021 * 19 18 17 31 31 H 1.08004 * 119.91453 * 179.97438 * 20 19 18 32 32 H 1.08001 * 120.08535 * 180.02562 * 21 20 19 33 33 H 1.09001 * 115.54621 * 34.41384 * 22 9 7 34 34 H 1.09003 * 117.49856 * 359.97438 * 23 22 9 35 35 H 1.08998 * 117.50091 * 145.01660 * 23 22 9 36 36 H 1.08994 * 117.49809 * 214.98139 * 24 22 9 37 37 H 1.09002 * 117.49686 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6241 -2.5575 -0.8879 11 8 2.1798 -3.5852 0.0027 12 6 1.7866 -4.7277 -0.5973 13 8 0.6846 -4.7990 -1.1069 14 6 2.6851 -5.8810 -0.6340 15 6 2.3550 -6.9704 -1.3582 16 6 1.2130 -6.9196 -2.2851 17 6 1.0320 -5.8102 -3.1173 18 6 -0.0402 -5.7704 -3.9834 19 6 -0.9357 -6.8246 -4.0309 20 6 -0.7634 -7.9260 -3.2106 21 6 0.3032 -7.9804 -2.3383 22 6 0.3720 -2.5794 1.2514 23 6 0.7540 -3.6064 2.3191 24 6 -0.4763 -3.8388 1.4386 25 1 -0.4851 0.8400 -0.0004 26 1 3.6128 -5.8605 -0.0816 27 1 2.9288 -7.8798 -1.2577 28 1 1.7299 -4.9869 -3.0814 29 1 -0.1816 -4.9143 -4.6263 30 1 -1.7758 -6.7856 -4.7083 31 1 -1.4667 -8.7446 -3.2531 32 1 0.4365 -8.8407 -1.6991 33 1 -0.0497 -1.6334 1.5910 34 1 1.6315 -4.2252 2.1312 35 1 0.5833 -3.3363 3.3612 36 1 -1.4560 -3.7214 1.9018 37 1 -0.4085 -4.6100 0.6713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347936818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:33 Heat of formation + Delta-G solvation = -21.684725 kcal Electronic energy + Delta-G solvation = -20754.155490 eV Core-core repulsion = 17655.645697 eV Total energy + Delta-G solvation = -3098.509794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63759 -39.96423 -38.23666 -36.50535 -34.87224 -34.82960 -31.77693 -30.89194 -29.76190 -26.05628 -24.84109 -23.42609 -23.19134 -22.92025 -21.20261 -20.25030 -18.90832 -18.60125 -17.71430 -17.51002 -16.96244 -16.32184 -15.93638 -15.58847 -15.54722 -14.87469 -14.55572 -14.37232 -14.13301 -13.81905 -13.62965 -13.25951 -13.13944 -12.97255 -12.78755 -12.34829 -12.22066 -12.10714 -12.01702 -11.94751 -11.33358 -11.29608 -10.99756 -10.83990 -10.45851 -10.41511 -9.68897 -9.11153 -8.26362 -6.43045 -0.31268 0.59197 0.89807 1.40239 1.43764 1.51713 2.14370 2.17435 2.48103 2.97675 3.01625 3.15973 3.76648 3.99402 4.07250 4.10352 4.15142 4.27050 4.27466 4.30323 4.49920 4.58974 4.71035 4.75017 4.87193 4.96917 5.00335 5.09039 5.18234 5.26685 5.29568 5.32944 5.53116 5.56928 5.59170 5.65343 5.72438 5.95328 6.15529 6.17476 6.63173 7.09601 7.30369 8.80699 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.022549 B = 0.005303 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.462452 B = 5278.631856 C = 5565.039482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.257 3.743 10 H 0.002 0.998 11 O -0.354 6.354 12 C 0.463 3.537 13 O -0.522 6.522 14 C -0.203 4.203 15 C 0.003 3.997 16 C -0.097 4.097 17 C -0.060 4.060 18 C -0.154 4.154 19 C -0.115 4.115 20 C -0.139 4.139 21 C -0.099 4.099 22 C -0.147 4.147 23 C -0.166 4.166 24 C -0.198 4.198 25 H 0.268 0.732 26 H 0.170 0.830 27 H 0.194 0.806 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 -16.008 -3.040 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.202 3.798 10 H 0.019 0.981 11 O -0.271 6.271 12 C 0.311 3.689 13 O -0.415 6.415 14 C -0.222 4.222 15 C -0.014 4.014 16 C -0.098 4.098 17 C -0.079 4.079 18 C -0.172 4.172 19 C -0.132 4.132 20 C -0.157 4.157 21 C -0.117 4.117 22 C -0.166 4.166 23 C -0.203 4.203 24 C -0.235 4.235 25 H 0.078 0.922 26 H 0.187 0.813 27 H 0.211 0.789 28 H 0.105 0.895 29 H 0.133 0.867 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.226 -15.851 -3.171 16.318 hybrid contribution -0.137 1.600 -0.108 1.609 sum 2.089 -14.252 -3.279 14.772 Atomic orbital electron populations 1.70105 1.07449 1.28285 1.49290 1.25783 0.95842 1.02707 0.93733 0.85335 0.78179 0.77228 0.79288 1.19377 1.20320 1.18849 1.21247 0.93866 0.89899 1.53300 0.91693 1.19193 0.86232 0.81751 0.92575 0.98066 1.86173 1.48188 1.22443 1.70247 1.22323 0.87199 0.84416 0.74995 1.90862 1.23758 1.83331 1.43522 1.22609 1.01326 0.90935 1.07293 1.22965 0.92432 0.97535 0.88502 1.19223 0.97717 0.95233 0.97580 1.21089 0.97422 0.95020 0.94339 1.21144 0.96100 0.99572 1.00411 1.21480 0.98643 0.93616 0.99500 1.21358 0.98715 0.99034 0.96559 1.21543 0.94037 0.97751 0.98361 1.22750 1.01377 0.93674 0.98797 1.22859 0.98142 1.03232 0.96066 1.23099 0.95419 1.01520 1.03491 0.92248 0.81285 0.78934 0.89531 0.86710 0.84325 0.83190 0.82950 0.88229 0.89113 0.88088 0.89269 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.67 11.59 21.45 0.25 -53.42 16 2 C 0.02 1.09 5.20 84.66 0.44 1.53 16 3 Si 0.98 43.65 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.55 -31.57 8.89 25.60 0.23 -31.35 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.26 14.25 2.37 29.85 0.07 14.32 16 10 H 0.00 0.11 7.11 -2.39 -0.02 0.09 16 11 O -0.35 -17.16 8.29 -58.18 -0.48 -17.64 16 12 C 0.46 19.28 5.80 69.90 0.41 19.68 16 13 O -0.52 -24.04 9.16 19.44 0.18 -23.86 16 14 C -0.20 -5.85 10.05 23.59 0.24 -5.61 16 15 C 0.00 0.08 9.81 23.85 0.23 0.31 16 16 C -0.10 -2.77 4.55 -20.15 -0.09 -2.87 16 17 C -0.06 -2.07 6.58 22.58 0.15 -1.93 16 18 C -0.15 -4.94 10.03 22.23 0.22 -4.72 16 19 C -0.11 -3.00 10.04 22.35 0.22 -2.78 16 20 C -0.14 -3.19 10.03 22.23 0.22 -2.96 16 21 C -0.10 -2.33 9.80 22.58 0.22 -2.11 16 22 C -0.15 -7.61 5.27 -10.79 -0.06 -7.66 16 23 C -0.17 -7.02 9.79 30.62 0.30 -6.72 16 24 C -0.20 -8.92 9.84 30.62 0.30 -8.62 16 25 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 26 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 27 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.09 3.34 6.98 -2.91 -0.02 3.32 16 29 H 0.11 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.10 5.68 6.46 -2.39 -0.02 5.67 16 34 H 0.09 3.71 6.92 -2.39 -0.02 3.69 16 35 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.09 4.03 5.32 -2.39 -0.01 4.02 16 Total: -1.00 -70.58 311.50 6.14 -64.44 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 1.07 Total: 26.28 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 3.11 Total: -41.47 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.25 Total: -53.42 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.30 Total: -41.51 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -70.58 6.14 -64.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.755 kcal (2) G-P(sol) polarization free energy of solvation -70.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds