Wall clock time and date at job start Mon Mar 30 2020 01:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48506 * 109.46974 * 264.84780 * 3 2 1 5 5 H 1.48498 * 109.47158 * 24.84305 * 3 2 1 6 6 H 1.48497 * 109.47288 * 144.84934 * 3 2 1 7 7 C 1.37875 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99853 * 4.84519 * 7 2 1 9 9 C 1.50705 * 120.00501 * 184.83855 * 7 2 1 10 10 H 1.08995 * 109.47017 * 54.72829 * 9 7 2 11 11 O 1.42906 * 109.46873 * 294.73688 * 9 7 2 12 12 C 1.34900 * 117.00078 * 149.99751 * 11 9 7 13 13 O 1.21625 * 120.00103 * 359.97438 * 12 11 9 14 14 C 1.46242 * 120.00164 * 179.97438 * 12 11 9 15 15 C 1.34911 * 119.99819 * 179.72379 * 14 12 11 16 16 C 1.47172 * 119.99761 * 180.27350 * 15 14 12 17 17 C 1.39857 * 120.17391 * 359.73055 * 16 15 14 18 18 C 1.37879 * 119.82391 * 179.71828 * 17 16 15 19 19 C 1.38408 * 120.17697 * 0.55584 * 18 17 16 20 20 C 1.38403 * 120.34559 * 359.71549 * 19 18 17 21 21 C 1.37888 * 120.17315 * 0.02562 * 20 19 18 22 22 C 1.52997 * 109.47661 * 174.73543 * 9 7 2 23 23 C 1.52995 * 117.49848 * 254.06021 * 22 9 7 24 24 C 1.52998 * 117.50142 * 185.39588 * 22 9 7 25 25 H 0.97000 * 120.00028 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99791 * 0.02562 * 14 12 11 27 27 H 1.08001 * 120.00332 * 0.27792 * 15 14 12 28 28 H 1.07999 * 120.08069 * 359.97024 * 17 16 15 29 29 H 1.08001 * 119.91472 * 180.26943 * 18 17 16 30 30 H 1.07993 * 119.82493 * 179.74494 * 19 18 17 31 31 H 1.08000 * 119.91514 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.09090 * 180.02562 * 21 20 19 33 33 H 1.09005 * 115.54405 * 39.72300 * 22 9 7 34 34 H 1.09004 * 117.49918 * 359.97438 * 23 22 9 35 35 H 1.08995 * 117.50465 * 145.01595 * 23 22 9 36 36 H 1.08998 * 117.49725 * 214.97456 * 24 22 9 37 37 H 1.08998 * 117.49535 * 359.97418 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9836 -1.3945 5 1 1.3963 2.6817 0.5882 6 1 3.4880 1.4741 0.8060 7 6 2.0045 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0780 9 6 3.5075 -1.1964 0.1106 10 1 3.8077 -0.6391 0.9979 11 8 4.0711 -0.5827 -1.0504 12 6 5.2494 0.0554 -0.8950 13 8 5.7829 0.0898 0.1974 14 6 5.8853 0.7059 -2.0401 15 6 7.0609 1.3489 -1.8834 16 6 7.6978 2.0087 -3.0345 17 6 7.0903 1.9666 -4.2935 18 6 7.6905 2.5922 -5.3657 19 6 8.8966 3.2508 -5.2011 20 6 9.5070 3.2921 -3.9595 21 6 8.9168 2.6759 -2.8763 22 6 4.0087 -2.6378 0.2198 23 6 4.4962 -3.1143 1.5895 24 6 5.5036 -2.8490 0.4679 25 1 -0.4850 0.8400 -0.0004 26 1 5.4113 0.6758 -3.0101 27 1 7.5347 1.3794 -0.9134 28 1 6.1516 1.4489 -4.4246 29 1 7.2205 2.5643 -6.3377 30 1 9.3637 3.7353 -6.0456 31 1 10.4479 3.8083 -3.8388 32 1 9.3940 2.7093 -1.9081 33 1 3.4960 -3.3629 -0.4122 34 1 4.4601 -2.4008 2.4128 35 1 4.3045 -4.1530 1.8585 36 1 5.9743 -3.7134 -0.0005 37 1 6.1300 -1.9611 0.5529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347936819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:36 Heat of formation + Delta-G solvation = -19.064464 kcal Electronic energy + Delta-G solvation = -19985.685133 eV Core-core repulsion = 16887.288963 eV Total energy + Delta-G solvation = -3098.396171 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.84882 -39.24504 -36.78596 -35.18698 -34.03401 -32.70281 -31.19890 -29.88132 -28.46783 -24.69299 -23.15828 -22.76865 -21.74893 -21.48914 -19.51755 -19.03723 -17.68655 -17.13261 -16.67475 -15.82453 -15.75112 -15.26884 -14.73802 -14.45556 -13.90718 -13.63505 -13.55232 -13.38221 -13.10369 -12.64969 -12.38441 -11.86303 -11.63491 -11.43372 -11.22628 -11.06395 -10.90604 -10.83337 -10.40493 -10.23590 -9.87436 -9.73042 -9.44437 -9.37204 -9.16553 -8.95639 -8.79684 -8.35728 -6.31285 -4.38495 0.46100 1.20969 1.95041 3.25790 3.27623 3.37607 3.45969 3.61505 3.79628 4.30090 4.51678 4.62217 4.73123 4.75754 4.90891 5.12782 5.21993 5.25676 5.30938 5.45932 5.63830 5.67935 5.73079 5.80386 5.88091 6.01242 6.16878 6.20533 6.22556 6.29089 6.46961 6.54027 6.55614 6.63697 6.75773 6.76901 6.98529 7.40584 7.64026 8.26958 8.67659 8.76685 9.29527 10.78090 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.004984 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.239595 B = 5616.714545 C = 6488.001167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.088 3.912 3 Si 0.872 3.128 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.089 0.911 9 C 0.203 3.797 10 H 0.050 0.950 11 O -0.340 6.340 12 C 0.475 3.525 13 O -0.524 6.524 14 C -0.172 4.172 15 C -0.041 4.041 16 C -0.066 4.066 17 C -0.103 4.103 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.099 4.099 22 C -0.140 4.140 23 C -0.170 4.170 24 C -0.202 4.202 25 H 0.270 0.730 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.727 4.665 -8.217 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.118 4.118 3 Si 0.699 3.301 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.544 4.544 8 H 0.107 0.893 9 C 0.151 3.849 10 H 0.067 0.933 11 O -0.256 6.256 12 C 0.322 3.678 13 O -0.417 6.417 14 C -0.190 4.190 15 C -0.059 4.059 16 C -0.066 4.066 17 C -0.121 4.121 18 C -0.139 4.139 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.117 4.117 22 C -0.159 4.159 23 C -0.207 4.207 24 C -0.238 4.238 25 H 0.080 0.920 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.651 4.736 -7.877 19.019 hybrid contribution 0.275 0.811 -0.011 0.857 sum 16.926 5.548 -7.888 19.480 Atomic orbital electron populations 1.69886 1.06369 1.27847 1.47047 1.25045 0.94763 0.99527 0.92501 0.86924 0.80634 0.82943 0.79579 1.19321 1.21497 1.18427 1.20992 0.86641 0.95362 1.51356 0.89282 1.20406 0.93166 0.87187 0.84143 0.93252 1.86685 1.32030 1.62068 1.44810 1.21322 0.81270 0.77031 0.88159 1.90731 1.64200 1.59002 1.27759 1.22656 0.96776 1.00814 0.98800 1.22368 0.93759 0.92160 0.97647 1.19055 0.95342 0.99054 0.93175 1.21557 0.99966 0.98523 0.92049 1.21121 0.95828 0.98024 0.98931 1.21292 0.95615 0.99009 0.97412 1.21089 1.00200 1.00050 0.92892 1.21386 0.94404 0.96645 0.99236 1.22666 0.94771 0.99355 0.99076 1.22792 1.04110 1.01164 0.92613 1.23177 0.93443 1.03254 1.03969 0.91972 0.84514 0.84535 0.85100 0.85673 0.86009 0.85808 0.85466 0.88038 0.89062 0.89493 0.90056 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 13.96 55.43 0.77 -25.34 16 2 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 3 Si 0.87 22.35 25.57 -169.99 -4.35 18.01 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.76 6.39 56.52 0.36 -6.40 16 7 C -0.51 -14.37 9.35 -34.44 -0.32 -14.69 16 8 H 0.09 2.65 7.99 -52.49 -0.42 2.23 16 9 C 0.20 5.09 1.51 -27.88 -0.04 5.05 16 10 H 0.05 1.32 5.86 -51.93 -0.30 1.02 16 11 O -0.34 -8.19 8.07 -41.04 -0.33 -8.52 16 12 C 0.48 10.26 6.16 33.95 0.21 10.46 16 13 O -0.52 -11.97 13.17 -19.36 -0.26 -12.23 16 14 C -0.17 -2.92 9.54 -37.55 -0.36 -3.28 16 15 C -0.04 -0.59 9.46 -37.14 -0.35 -0.94 16 16 C -0.07 -0.82 5.87 -105.06 -0.62 -1.44 16 17 C -0.10 -1.19 9.41 -39.11 -0.37 -1.56 16 18 C -0.12 -1.18 10.03 -39.65 -0.40 -1.57 16 19 C -0.12 -1.02 10.04 -39.46 -0.40 -1.41 16 20 C -0.12 -1.13 10.03 -39.65 -0.40 -1.52 16 21 C -0.10 -1.04 9.80 -39.10 -0.38 -1.42 16 22 C -0.14 -3.03 5.29 -90.62 -0.48 -3.51 16 23 C -0.17 -3.20 10.18 -26.69 -0.27 -3.47 16 24 C -0.20 -3.81 9.81 -26.69 -0.26 -4.07 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.14 2.05 6.08 -52.49 -0.32 1.73 16 27 H 0.14 1.95 7.52 -52.49 -0.39 1.56 16 28 H 0.13 1.43 6.17 -52.49 -0.32 1.11 16 29 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.10 2.15 8.14 -51.93 -0.42 1.73 16 34 H 0.09 1.75 8.08 -51.93 -0.42 1.33 16 35 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.10 2.09 5.53 -51.93 -0.29 1.80 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -31.63 315.51 -8.54 -40.17 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.60 Total: 4.09 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -4.53 Total: -20.93 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.77 Total: -25.34 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.59 Total: -20.75 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.35 Total: 18.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.63 -8.54 -40.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.103 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds