Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48506 * 109.46974 * 264.84780 * 3 2 1 5 5 H 1.48498 * 109.47158 * 24.84305 * 3 2 1 6 6 H 1.48497 * 109.47288 * 144.84934 * 3 2 1 7 7 C 1.37875 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99853 * 4.84519 * 7 2 1 9 9 C 1.50705 * 120.00501 * 184.83855 * 7 2 1 10 10 H 1.08995 * 109.47017 * 54.72829 * 9 7 2 11 11 O 1.42906 * 109.46873 * 294.73688 * 9 7 2 12 12 C 1.34900 * 117.00078 * 149.99751 * 11 9 7 13 13 O 1.21625 * 120.00103 * 359.97438 * 12 11 9 14 14 C 1.46242 * 120.00164 * 179.97438 * 12 11 9 15 15 C 1.34911 * 119.99819 * 179.72379 * 14 12 11 16 16 C 1.47172 * 119.99761 * 180.27350 * 15 14 12 17 17 C 1.39857 * 120.17391 * 359.73055 * 16 15 14 18 18 C 1.37879 * 119.82391 * 179.71828 * 17 16 15 19 19 C 1.38408 * 120.17697 * 0.55584 * 18 17 16 20 20 C 1.38403 * 120.34559 * 359.71549 * 19 18 17 21 21 C 1.37888 * 120.17315 * 0.02562 * 20 19 18 22 22 C 1.52997 * 109.47661 * 174.73543 * 9 7 2 23 23 C 1.52995 * 117.49848 * 254.06021 * 22 9 7 24 24 C 1.52998 * 117.50142 * 185.39588 * 22 9 7 25 25 H 0.97000 * 120.00028 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99791 * 0.02562 * 14 12 11 27 27 H 1.08001 * 120.00332 * 0.27792 * 15 14 12 28 28 H 1.07999 * 120.08069 * 359.97024 * 17 16 15 29 29 H 1.08001 * 119.91472 * 180.26943 * 18 17 16 30 30 H 1.07993 * 119.82493 * 179.74494 * 19 18 17 31 31 H 1.08000 * 119.91514 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.09090 * 180.02562 * 21 20 19 33 33 H 1.09005 * 115.54405 * 39.72300 * 22 9 7 34 34 H 1.09004 * 117.49918 * 359.97438 * 23 22 9 35 35 H 1.08995 * 117.50465 * 145.01595 * 23 22 9 36 36 H 1.08998 * 117.49725 * 214.97456 * 24 22 9 37 37 H 1.08998 * 117.49535 * 359.97418 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9836 -1.3945 5 1 1.3963 2.6817 0.5882 6 1 3.4880 1.4741 0.8060 7 6 2.0045 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0780 9 6 3.5075 -1.1964 0.1106 10 1 3.8077 -0.6391 0.9979 11 8 4.0711 -0.5827 -1.0504 12 6 5.2494 0.0554 -0.8950 13 8 5.7829 0.0898 0.1974 14 6 5.8853 0.7059 -2.0401 15 6 7.0609 1.3489 -1.8834 16 6 7.6978 2.0087 -3.0345 17 6 7.0903 1.9666 -4.2935 18 6 7.6905 2.5922 -5.3657 19 6 8.8966 3.2508 -5.2011 20 6 9.5070 3.2921 -3.9595 21 6 8.9168 2.6759 -2.8763 22 6 4.0087 -2.6378 0.2198 23 6 4.4962 -3.1143 1.5895 24 6 5.5036 -2.8490 0.4679 25 1 -0.4850 0.8400 -0.0004 26 1 5.4113 0.6758 -3.0101 27 1 7.5347 1.3794 -0.9134 28 1 6.1516 1.4489 -4.4246 29 1 7.2205 2.5643 -6.3377 30 1 9.3637 3.7353 -6.0456 31 1 10.4479 3.8083 -3.8388 32 1 9.3940 2.7093 -1.9081 33 1 3.4960 -3.3629 -0.4122 34 1 4.4601 -2.4008 2.4128 35 1 4.3045 -4.1530 1.8585 36 1 5.9743 -3.7134 -0.0005 37 1 6.1300 -1.9611 0.5529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347936819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = -35.725320 kcal Electronic energy + Delta-G solvation = -19986.407602 eV Core-core repulsion = 16887.288963 eV Total energy + Delta-G solvation = -3099.118640 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53629 -40.11958 -38.43644 -36.89295 -35.16387 -34.87796 -31.95898 -31.11214 -30.23800 -26.05936 -24.93062 -23.64419 -23.24541 -22.66536 -21.24912 -20.40082 -19.24493 -19.05112 -17.74383 -17.59913 -17.26648 -16.37215 -16.05969 -15.83744 -15.47204 -15.19680 -14.64565 -14.45586 -14.29699 -14.08575 -13.95174 -13.47173 -13.28583 -13.09181 -12.83743 -12.40103 -12.22115 -12.11709 -11.90037 -11.84052 -11.51100 -11.44534 -11.29241 -11.07036 -10.97460 -10.76140 -9.91676 -9.33722 -8.53127 -6.64020 -0.61207 0.46167 0.86319 1.19452 1.21636 1.30151 1.95855 2.00949 2.17897 2.91969 2.96698 2.99272 3.67343 3.77654 3.86610 4.02136 4.05688 4.09589 4.14816 4.23331 4.30587 4.43659 4.48813 4.52135 4.73189 4.81619 4.91531 4.95459 4.97586 5.12717 5.18614 5.25792 5.29054 5.33844 5.51471 5.55481 5.61114 5.83128 6.01489 6.10642 6.45958 6.96264 7.08166 8.60441 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.004984 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.239595 B = 5616.714545 C = 6488.001167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.045 3.955 3 Si 0.923 3.077 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.212 3.788 10 H 0.029 0.971 11 O -0.355 6.355 12 C 0.472 3.528 13 O -0.546 6.546 14 C -0.214 4.214 15 C 0.004 3.996 16 C -0.100 4.100 17 C -0.112 4.112 18 C -0.130 4.130 19 C -0.104 4.104 20 C -0.128 4.128 21 C -0.098 4.098 22 C -0.171 4.171 23 C -0.157 4.157 24 C -0.181 4.181 25 H 0.276 0.724 26 H 0.151 0.849 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.892 5.956 -9.700 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.747 3.253 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.159 3.841 10 H 0.047 0.953 11 O -0.272 6.272 12 C 0.322 3.678 13 O -0.441 6.441 14 C -0.233 4.233 15 C -0.014 4.014 16 C -0.100 4.100 17 C -0.130 4.130 18 C -0.148 4.148 19 C -0.122 4.122 20 C -0.146 4.146 21 C -0.116 4.116 22 C -0.190 4.190 23 C -0.194 4.194 24 C -0.217 4.217 25 H 0.085 0.915 26 H 0.169 0.831 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.164 0.836 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.821 6.030 -9.371 22.739 hybrid contribution -0.487 0.477 0.346 0.765 sum 19.334 6.507 -9.025 22.307 Atomic orbital electron populations 1.69966 1.07522 1.28856 1.48868 1.25678 0.95381 1.02311 0.92388 0.86135 0.79130 0.79994 0.79992 1.18086 1.20197 1.19502 1.21154 0.88765 0.94398 1.51376 0.92035 1.20002 0.91450 0.89187 0.83464 0.95344 1.86552 1.33822 1.63001 1.43782 1.21957 0.80210 0.76375 0.89301 1.90705 1.64462 1.59985 1.28913 1.22453 0.98612 1.04428 0.97808 1.22573 0.91839 0.88579 0.98450 1.19050 0.96859 1.01355 0.92751 1.21722 1.00142 0.98739 0.92425 1.21434 0.96349 0.97698 0.99299 1.21754 0.94792 0.97297 0.98358 1.21477 1.01155 0.99521 0.92401 1.21661 0.93545 0.95748 1.00645 1.22541 0.97242 0.97349 1.01824 1.22926 1.02724 1.02580 0.91212 1.23175 0.91550 1.03696 1.03326 0.91498 0.83100 0.84549 0.85310 0.83621 0.82980 0.82926 0.84050 0.88090 0.89912 0.86366 0.86966 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.23 13.96 21.45 0.30 -55.93 16 2 C 0.05 2.70 5.47 84.66 0.46 3.16 16 3 Si 0.92 47.16 25.57 68.60 1.75 48.92 16 4 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -14.15 6.39 99.48 0.64 -13.51 16 7 C -0.52 -30.73 9.35 25.60 0.24 -30.49 16 8 H 0.06 3.87 7.99 -2.91 -0.02 3.85 16 9 C 0.21 10.95 1.51 29.85 0.05 10.99 16 10 H 0.03 1.59 5.86 -2.39 -0.01 1.57 16 11 O -0.35 -17.52 8.07 -58.15 -0.47 -17.99 16 12 C 0.47 20.65 6.16 69.90 0.43 21.08 16 13 O -0.55 -25.31 13.17 19.43 0.26 -25.06 16 14 C -0.21 -7.26 9.54 23.59 0.22 -7.03 16 15 C 0.00 0.11 9.46 23.85 0.23 0.34 16 16 C -0.10 -2.29 5.87 -20.15 -0.12 -2.41 16 17 C -0.11 -2.38 9.41 22.58 0.21 -2.17 16 18 C -0.13 -2.11 10.03 22.23 0.22 -1.89 16 19 C -0.10 -1.39 10.04 22.35 0.22 -1.17 16 20 C -0.13 -1.78 10.03 22.23 0.22 -1.56 16 21 C -0.10 -1.77 9.80 22.58 0.22 -1.55 16 22 C -0.17 -7.48 5.29 -10.80 -0.06 -7.53 16 23 C -0.16 -5.79 10.18 30.62 0.31 -5.48 16 24 C -0.18 -6.64 9.81 30.62 0.30 -6.34 16 25 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 26 H 0.15 4.53 6.08 -2.91 -0.02 4.52 16 27 H 0.14 3.76 7.52 -2.91 -0.02 3.74 16 28 H 0.13 2.69 6.17 -2.91 -0.02 2.67 16 29 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 31 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.10 4.37 8.14 -2.38 -0.02 4.35 16 34 H 0.08 3.17 8.08 -2.39 -0.02 3.15 16 35 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.09 3.56 5.53 -2.39 -0.01 3.55 16 Total: -1.00 -70.83 315.51 6.01 -64.82 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.00 Total: 17.29 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 3.17 Total: -32.05 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.30 Total: -55.93 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.21 Total: -43.05 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.75 Total: 48.92 kcal Total: -70.83 6.01 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.092 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds