Wall clock time and date at job start Mon Mar 30 2020 00:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86793 * 120.00269 * 2 1 4 4 H 1.48497 * 109.47414 * 274.99094 * 3 2 1 5 5 H 1.48509 * 109.47002 * 34.98613 * 3 2 1 6 6 H 1.48504 * 109.47486 * 154.98654 * 3 2 1 7 7 C 1.40027 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00250 * 186.34537 * 7 2 1 9 9 C 1.41325 * 119.99628 * 6.34928 * 7 2 1 10 10 C 1.40592 * 119.78139 * 173.78184 * 9 7 2 11 11 C 1.38347 * 119.14679 * 179.97438 * 10 9 7 12 12 C 1.38637 * 118.68094 * 359.97438 * 11 10 9 13 13 C 1.39758 * 119.49054 * 0.02562 * 12 11 10 14 14 N 1.38824 * 119.58208 * 179.97438 * 13 12 11 15 15 C 1.46496 * 120.00151 * 0.02562 * 14 13 12 16 16 C 1.53001 * 109.47225 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47017 * 179.97438 * 16 15 14 18 18 H 1.08999 * 109.47199 * 55.00496 * 17 16 15 19 19 O 1.42894 * 109.47320 * 294.99846 * 17 16 15 20 20 C 1.53006 * 109.46940 * 175.00082 * 17 16 15 21 21 F 1.39902 * 109.47255 * 185.00110 * 20 17 16 22 22 F 1.39901 * 109.46986 * 305.00119 * 20 17 16 23 23 N 1.31982 * 120.83389 * 0.25361 * 13 12 11 24 24 H 0.96992 * 119.99455 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.42788 * 0.02562 * 10 9 7 26 26 H 1.07995 * 120.65625 * 179.97438 * 11 10 9 27 27 H 1.07992 * 120.25469 * 180.02562 * 12 11 10 28 28 H 0.97003 * 120.00126 * 179.97438 * 14 13 12 29 29 H 1.08996 * 109.47672 * 59.99800 * 15 14 13 30 30 H 1.09003 * 109.47309 * 299.99423 * 15 14 13 31 31 H 1.09001 * 109.47186 * 60.00055 * 16 15 14 32 32 H 1.08996 * 109.47290 * 299.99855 * 16 15 14 33 33 H 0.96704 * 114.00570 * 300.00215 * 19 17 16 34 34 H 1.09001 * 109.46989 * 65.00334 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.3836 2.1073 -1.3947 5 1 1.4956 2.6199 0.8028 6 1 3.5879 1.4120 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2156 0.1028 9 6 1.3074 -2.4327 -0.1364 10 6 2.0214 -3.6367 -0.2682 11 6 1.3227 -4.8235 -0.3998 12 6 -0.0631 -4.7836 -0.3967 13 6 -0.7157 -3.5551 -0.2622 14 7 -2.1033 -3.5129 -0.2594 15 6 -2.8741 -4.7511 -0.3963 16 6 -4.3691 -4.4276 -0.3621 17 6 -5.1741 -5.7208 -0.5057 18 1 -4.8649 -6.4285 0.2635 19 8 -4.9394 -6.2872 -1.7964 20 6 -6.6647 -5.4140 -0.3468 21 9 -7.3913 -6.6094 -0.3641 22 9 -6.8783 -4.7559 0.8691 23 7 -0.0295 -2.4340 -0.1434 24 1 -0.4849 0.8400 0.0004 25 1 3.1014 -3.6352 -0.2657 26 1 1.8464 -5.7623 -0.5030 27 1 -0.6339 -5.6948 -0.4974 28 1 -2.5625 -2.6635 -0.1661 29 1 -2.6295 -5.4241 0.4254 30 1 -2.6273 -5.2299 -1.3439 31 1 -4.6141 -3.7545 -1.1837 32 1 -4.6158 -3.9491 0.5856 33 1 -5.1919 -5.7110 -2.5307 34 1 -6.9939 -4.7768 -1.1676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348547957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:18 Heat of formation + Delta-G solvation = -123.140500 kcal Electronic energy + Delta-G solvation = -20171.514485 eV Core-core repulsion = 16546.668460 eV Total energy + Delta-G solvation = -3624.846025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.24353 -47.25580 -38.53405 -37.92580 -35.27262 -33.38383 -31.82384 -30.34727 -29.17025 -27.22071 -25.34567 -23.45410 -22.13158 -21.25735 -20.33643 -18.05452 -17.86406 -17.43725 -17.27507 -16.28156 -15.68177 -15.65053 -14.81857 -14.63597 -14.17220 -14.13976 -13.97013 -13.60621 -13.44036 -12.98653 -12.97187 -12.55329 -12.35576 -12.10292 -11.62854 -11.42864 -11.21481 -11.10781 -10.98384 -10.62717 -10.45437 -10.36673 -9.91224 -9.47155 -8.88938 -7.90853 -7.51209 -6.52771 -6.34179 -4.47021 2.87283 3.11091 3.14794 3.23755 3.27811 3.30016 3.64060 3.82386 3.98488 4.09302 4.29037 4.59533 4.80472 4.84807 4.89570 5.16903 5.42198 5.58787 5.97349 6.07654 6.16891 6.17124 6.58827 6.85760 6.89708 6.94430 7.10882 7.24845 7.59742 7.81261 7.91997 8.16902 8.35735 8.66815 8.80360 9.11599 10.24039 10.40037 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.003708 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.720126 B = 7549.386208 C = 8385.208527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.436 4.436 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.315 4.315 11 C -0.032 4.032 12 C -0.366 4.366 13 C 0.410 3.590 14 N -0.741 5.741 15 C 0.149 3.851 16 C -0.165 4.165 17 C 0.069 3.931 18 H 0.125 0.875 19 O -0.538 6.538 20 C 0.233 3.767 21 F -0.200 7.200 22 F -0.198 7.198 23 N -0.532 5.532 24 H 0.269 0.731 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.395 0.605 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.380 0.620 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 -5.854 -2.238 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.153 4.153 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.057 4.057 12 C -0.392 4.392 13 C 0.170 3.830 14 N -0.378 5.378 15 C 0.023 3.977 16 C -0.203 4.203 17 C 0.008 3.992 18 H 0.142 0.858 19 O -0.343 6.343 20 C 0.179 3.821 21 F -0.182 7.182 22 F -0.180 7.180 23 N -0.253 5.253 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.229 0.771 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.553 -5.644 -1.790 13.880 hybrid contribution 0.282 0.650 -0.258 0.754 sum -12.271 -4.994 -2.048 13.406 Atomic orbital electron populations 1.70157 1.07182 1.27282 1.29323 1.26044 0.94836 1.00915 0.93492 0.86360 0.80615 0.81115 0.78949 1.19588 1.20255 1.18553 1.19589 0.94595 0.89546 1.43077 0.89856 1.18205 0.86845 0.91804 0.86612 1.21550 0.98458 0.93822 1.20018 1.20605 0.93464 0.96360 0.95227 1.20623 0.94622 0.95943 1.28027 1.18499 0.84177 0.90333 0.89976 1.44088 1.02882 1.07509 1.83347 1.20871 0.87730 0.87883 1.01185 1.22441 0.96617 0.96577 1.04647 1.22900 0.90222 0.97714 0.88370 0.85767 1.86726 1.87000 1.46385 1.14180 1.22789 0.93400 0.80586 0.85371 1.93009 1.79644 1.48690 1.96812 1.93005 1.95772 1.81023 1.48182 1.68203 1.07934 1.24149 1.25061 0.92002 0.88677 0.88904 0.89133 0.77080 0.92983 0.92191 0.90269 0.89187 0.77155 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.02 11.49 55.55 0.64 -18.39 16 2 C 0.07 1.84 5.49 -17.34 -0.10 1.75 16 3 Si 0.91 18.71 29.56 -169.99 -5.03 13.68 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.44 -11.87 9.13 -37.74 -0.34 -12.21 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.29 8.19 6.54 -84.99 -0.56 7.64 16 10 C -0.32 -8.05 9.83 -38.65 -0.38 -8.43 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.37 -8.53 9.34 -38.87 -0.36 -8.89 16 13 C 0.41 10.01 7.65 -155.31 -1.19 8.83 16 14 N -0.74 -14.42 5.72 -60.40 -0.35 -14.77 16 15 C 0.15 2.19 4.78 -4.04 -0.02 2.17 16 16 C -0.16 -1.69 4.91 -26.73 -0.13 -1.82 16 17 C 0.07 0.62 3.15 -26.73 -0.08 0.54 16 18 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 19 O -0.54 -4.93 12.87 -35.23 -0.45 -5.39 16 20 C 0.23 1.93 5.02 37.16 0.19 2.12 16 21 F -0.20 -2.12 17.33 2.25 0.04 -2.08 16 22 F -0.20 -2.07 16.53 2.25 0.04 -2.03 16 23 N -0.53 -14.73 7.91 -10.33 -0.08 -14.81 16 24 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 25 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 26 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 27 H 0.09 1.89 6.68 -52.49 -0.35 1.54 16 28 H 0.39 7.56 8.59 -40.82 -0.35 7.21 16 29 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 30 H 0.06 0.91 7.60 -51.93 -0.39 0.52 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.96 7.53 -51.93 -0.39 0.57 16 33 H 0.38 1.94 9.05 45.56 0.41 2.36 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -31.93 302.79 -7.15 -39.08 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -3.15 Total: 9.60 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.37 Total: -9.48 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.21 Total: -47.96 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.45 Total: -5.39 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.08 Total: -4.11 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.93 -7.15 -39.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348547957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.059 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds