Wall clock time and date at job start Mon Mar 30 2020 00:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86793 * 120.00269 * 2 1 4 4 H 1.48497 * 109.47414 * 274.99094 * 3 2 1 5 5 H 1.48509 * 109.47002 * 34.98613 * 3 2 1 6 6 H 1.48504 * 109.47486 * 154.98654 * 3 2 1 7 7 C 1.40027 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00250 * 186.34537 * 7 2 1 9 9 C 1.41325 * 119.99628 * 6.34928 * 7 2 1 10 10 C 1.40592 * 119.78139 * 173.78184 * 9 7 2 11 11 C 1.38347 * 119.14679 * 179.97438 * 10 9 7 12 12 C 1.38637 * 118.68094 * 359.97438 * 11 10 9 13 13 C 1.39758 * 119.49054 * 0.02562 * 12 11 10 14 14 N 1.38824 * 119.58208 * 179.97438 * 13 12 11 15 15 C 1.46496 * 120.00151 * 0.02562 * 14 13 12 16 16 C 1.53001 * 109.47225 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47017 * 179.97438 * 16 15 14 18 18 H 1.08999 * 109.47199 * 55.00496 * 17 16 15 19 19 O 1.42894 * 109.47320 * 294.99846 * 17 16 15 20 20 C 1.53006 * 109.46940 * 175.00082 * 17 16 15 21 21 F 1.39902 * 109.47255 * 185.00110 * 20 17 16 22 22 F 1.39901 * 109.46986 * 305.00119 * 20 17 16 23 23 N 1.31982 * 120.83389 * 0.25361 * 13 12 11 24 24 H 0.96992 * 119.99455 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.42788 * 0.02562 * 10 9 7 26 26 H 1.07995 * 120.65625 * 179.97438 * 11 10 9 27 27 H 1.07992 * 120.25469 * 180.02562 * 12 11 10 28 28 H 0.97003 * 120.00126 * 179.97438 * 14 13 12 29 29 H 1.08996 * 109.47672 * 59.99800 * 15 14 13 30 30 H 1.09003 * 109.47309 * 299.99423 * 15 14 13 31 31 H 1.09001 * 109.47186 * 60.00055 * 16 15 14 32 32 H 1.08996 * 109.47290 * 299.99855 * 16 15 14 33 33 H 0.96704 * 114.00570 * 300.00215 * 19 17 16 34 34 H 1.09001 * 109.46989 * 65.00334 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.3836 2.1073 -1.3947 5 1 1.4956 2.6199 0.8028 6 1 3.5879 1.4120 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2156 0.1028 9 6 1.3074 -2.4327 -0.1364 10 6 2.0214 -3.6367 -0.2682 11 6 1.3227 -4.8235 -0.3998 12 6 -0.0631 -4.7836 -0.3967 13 6 -0.7157 -3.5551 -0.2622 14 7 -2.1033 -3.5129 -0.2594 15 6 -2.8741 -4.7511 -0.3963 16 6 -4.3691 -4.4276 -0.3621 17 6 -5.1741 -5.7208 -0.5057 18 1 -4.8649 -6.4285 0.2635 19 8 -4.9394 -6.2872 -1.7964 20 6 -6.6647 -5.4140 -0.3468 21 9 -7.3913 -6.6094 -0.3641 22 9 -6.8783 -4.7559 0.8691 23 7 -0.0295 -2.4340 -0.1434 24 1 -0.4849 0.8400 0.0004 25 1 3.1014 -3.6352 -0.2657 26 1 1.8464 -5.7623 -0.5030 27 1 -0.6339 -5.6948 -0.4974 28 1 -2.5625 -2.6635 -0.1661 29 1 -2.6295 -5.4241 0.4254 30 1 -2.6273 -5.2299 -1.3439 31 1 -4.6141 -3.7545 -1.1837 32 1 -4.6158 -3.9491 0.5856 33 1 -5.1919 -5.7110 -2.5307 34 1 -6.9939 -4.7768 -1.1676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348547957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:17 Heat of formation + Delta-G solvation = -145.500261 kcal Electronic energy + Delta-G solvation = -20172.484077 eV Core-core repulsion = 16546.668460 eV Total energy + Delta-G solvation = -3625.815617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.97010 -47.99952 -40.16773 -38.94470 -36.73945 -35.18743 -33.03775 -32.18036 -30.68591 -28.42269 -27.23718 -24.53471 -23.47657 -22.64558 -22.08803 -19.28319 -18.73944 -18.65985 -18.13970 -17.80909 -16.77005 -16.59754 -16.49382 -16.27229 -15.75582 -15.16579 -14.91368 -14.86140 -14.66337 -14.36776 -14.12416 -13.88523 -13.77877 -13.28786 -12.94750 -12.84187 -12.71309 -12.52949 -12.36288 -12.23232 -11.93554 -11.72697 -11.25817 -11.11762 -10.65254 -9.83253 -9.45042 -8.30065 -8.24018 -6.47543 1.05905 1.33962 1.42608 1.56407 1.58703 2.26001 2.40500 2.81235 2.92320 3.11990 3.25869 3.52391 3.80374 3.97950 4.04498 4.12092 4.22934 4.39233 4.56459 4.61611 4.76770 4.95717 5.00554 5.03136 5.05690 5.15752 5.38179 5.71798 5.96663 6.06682 6.23541 6.55370 6.64236 6.84074 6.95434 7.22119 8.33870 8.51313 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.003708 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.720126 B = 7549.386208 C = 8385.208527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.027 3.973 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.473 4.473 8 H 0.086 0.914 9 C 0.259 3.741 10 C -0.343 4.343 11 C -0.031 4.031 12 C -0.369 4.369 13 C 0.392 3.608 14 N -0.734 5.734 15 C 0.147 3.853 16 C -0.151 4.151 17 C 0.079 3.921 18 H 0.114 0.886 19 O -0.551 6.551 20 C 0.232 3.768 21 F -0.214 7.214 22 F -0.211 7.211 23 N -0.565 5.565 24 H 0.277 0.723 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.395 0.605 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.398 0.602 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 -5.783 -2.825 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.505 4.505 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.367 4.367 11 C -0.055 4.055 12 C -0.394 4.394 13 C 0.152 3.848 14 N -0.370 5.370 15 C 0.022 3.978 16 C -0.189 4.189 17 C 0.018 3.982 18 H 0.132 0.868 19 O -0.360 6.360 20 C 0.179 3.821 21 F -0.195 7.195 22 F -0.193 7.193 23 N -0.288 5.288 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.229 0.771 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.250 0.750 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.419 -5.608 -2.387 14.738 hybrid contribution 0.462 0.490 -0.101 0.681 sum -12.957 -5.117 -2.488 14.151 Atomic orbital electron populations 1.70239 1.08762 1.28723 1.29676 1.26941 0.95739 1.04290 0.92466 0.85145 0.79107 0.75925 0.79159 1.18960 1.19212 1.18062 1.19944 0.95035 0.90699 1.44825 0.89611 1.18684 0.87677 0.93102 0.87370 1.21707 0.99022 0.94162 1.21760 1.21012 0.93785 0.97112 0.93573 1.20960 0.94980 0.96544 1.26945 1.18977 0.86102 0.90246 0.89506 1.44271 1.01397 1.09220 1.82105 1.21066 0.89960 0.85905 1.00831 1.22311 0.93498 0.97697 1.05429 1.22686 0.90645 0.96522 0.88377 0.86781 1.86700 1.87198 1.47325 1.14744 1.23071 0.92658 0.80532 0.85873 1.92982 1.79854 1.49785 1.96867 1.92981 1.95792 1.81197 1.49329 1.68190 1.08185 1.25855 1.26523 0.91283 0.87953 0.85386 0.86585 0.77107 0.93423 0.92227 0.88334 0.89373 0.75042 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.51 11.49 21.84 0.25 -40.26 16 2 C 0.03 1.42 5.49 85.29 0.47 1.89 16 3 Si 0.99 38.55 29.56 68.60 2.03 40.57 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.47 -26.46 9.13 23.46 0.21 -26.24 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.26 14.91 6.54 40.19 0.26 15.17 16 10 C -0.34 -17.80 9.83 22.87 0.22 -17.58 16 11 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 12 C -0.37 -16.84 9.34 22.73 0.21 -16.63 16 13 C 0.39 19.23 7.65 133.40 1.02 20.25 16 14 N -0.73 -28.20 5.72 -345.01 -1.97 -30.17 16 15 C 0.15 4.09 4.78 86.38 0.41 4.50 16 16 C -0.15 -2.79 4.91 30.59 0.15 -2.64 16 17 C 0.08 1.25 3.15 30.60 0.10 1.35 16 18 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 19 O -0.55 -8.75 12.87 -148.98 -1.92 -10.67 16 20 C 0.23 3.28 5.02 71.98 0.36 3.64 16 21 F -0.21 -4.12 17.33 44.97 0.78 -3.34 16 22 F -0.21 -4.02 16.53 44.97 0.74 -3.28 16 23 N -0.56 -31.96 7.91 -186.58 -1.48 -33.43 16 24 H 0.28 13.38 8.29 -92.71 -0.77 12.61 16 25 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 26 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 27 H 0.12 4.61 6.68 -2.91 -0.02 4.59 16 28 H 0.39 15.03 8.59 -92.71 -0.80 14.23 16 29 H 0.05 1.38 7.92 -2.39 -0.02 1.36 16 30 H 0.06 1.70 7.60 -2.39 -0.02 1.68 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.71 7.53 -2.39 -0.02 1.70 16 33 H 0.40 2.85 9.05 -74.05 -0.67 2.18 16 34 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.35 302.79 1.77 -68.58 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.32 Total: 29.45 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 3.65 Total: -17.45 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -3.20 Total: -103.87 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.92 Total: -10.67 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.52 Total: -6.61 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.57 kcal Total: -70.35 1.77 -68.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348547957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.922 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds