Wall clock time and date at job start Mon Mar 30 2020 00:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99877 * 2 1 4 4 H 1.48507 * 109.46814 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47184 * 299.99719 * 3 2 1 6 6 H 1.48499 * 109.47071 * 60.00109 * 3 2 1 7 7 C 1.38893 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 174.28776 * 7 2 1 9 9 N 1.37213 * 119.99963 * 354.28507 * 7 2 1 10 10 C 1.34774 * 120.00056 * 185.76650 * 9 7 2 11 11 O 1.21267 * 120.00104 * 185.36169 * 10 9 7 12 12 C 1.50700 * 119.99782 * 5.37085 * 10 9 7 13 13 N 1.46498 * 109.47077 * 180.02562 * 12 10 9 14 14 C 1.34950 * 126.04201 * 125.00073 * 13 12 10 15 15 C 1.35310 * 107.75033 * 179.97438 * 14 13 12 16 16 C 1.39872 * 107.91699 * 359.97438 * 15 14 13 17 17 N 1.30832 * 108.20463 * 359.73977 * 16 15 14 18 18 C 1.39426 * 120.00104 * 5.76893 * 9 7 2 19 19 C 1.39073 * 119.69764 * 264.96523 * 18 9 7 20 20 C 1.38373 * 119.09773 * 179.97438 * 19 18 9 21 21 C 1.38825 * 118.49660 * 359.97438 * 20 19 18 22 22 C 1.38150 * 119.31072 * 0.27858 * 21 20 19 23 23 N 1.31885 * 120.84924 * 359.44407 * 22 21 20 24 24 H 0.97005 * 120.00305 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47013 * 299.99880 * 12 10 9 26 26 H 1.08998 * 109.47446 * 59.99593 * 12 10 9 27 27 H 1.08003 * 126.12408 * 359.97438 * 14 13 12 28 28 H 1.07995 * 126.04166 * 179.97438 * 15 14 13 29 29 H 1.08010 * 125.89581 * 180.02562 * 16 15 14 30 30 H 1.07994 * 120.44683 * 0.02562 * 19 18 9 31 31 H 1.08001 * 120.75030 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.34639 * 179.97438 * 21 20 19 33 33 H 1.07992 * 119.57703 * 179.70478 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0086 -1.2029 -0.0005 8 1 3.0846 -1.2051 -0.0936 9 7 1.3276 -2.3882 0.1173 10 6 2.0064 -3.5467 0.2337 11 8 1.4086 -4.6018 0.2400 12 6 3.5083 -3.5308 0.3564 13 7 4.0037 -4.9050 0.4685 14 6 4.9321 -5.4814 -0.3233 15 6 5.1100 -6.7518 0.1071 16 6 4.2617 -6.9587 1.1997 17 7 3.6024 -5.8506 1.4210 18 6 -0.0667 -2.3943 0.1164 19 6 -0.7564 -2.3831 1.3240 20 6 -2.1401 -2.3888 1.3087 21 6 -2.7888 -2.4050 0.0814 22 6 -2.0398 -2.4208 -1.0793 23 7 -0.7218 -2.4096 -1.0339 24 1 -0.4851 0.8401 0.0004 25 1 3.9401 -3.0603 -0.5270 26 1 3.7944 -2.9675 1.2446 27 1 5.4418 -5.0126 -1.1521 28 1 5.7873 -7.4777 -0.3179 29 1 4.1704 -7.8738 1.7662 30 1 -0.2194 -2.3693 2.2609 31 1 -2.7026 -2.3800 2.2306 32 1 -3.8678 -2.4102 0.0346 33 1 -2.5400 -2.4382 -2.0363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001437238598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:26 Heat of formation + Delta-G solvation = 89.665950 kcal Electronic energy + Delta-G solvation = -20495.384651 eV Core-core repulsion = 17330.455793 eV Total energy + Delta-G solvation = -3164.928859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.04009 -41.31310 -39.57775 -36.80838 -34.15752 -33.64620 -32.99031 -31.24868 -30.81245 -28.30460 -26.99857 -24.22526 -24.12442 -22.14879 -21.85927 -21.08833 -19.87833 -18.34582 -17.79700 -17.33258 -17.04409 -16.57423 -16.30588 -16.01444 -15.51388 -15.07016 -14.90554 -14.41455 -14.23216 -14.08324 -13.80292 -13.57172 -13.32827 -13.08731 -12.96322 -12.80342 -12.43795 -12.05050 -11.65202 -11.43427 -10.91167 -10.52074 -10.33390 -10.21773 -9.80177 -9.68784 -9.40745 -8.19440 -6.04572 0.59305 0.76179 1.09251 1.37929 1.46392 1.59200 1.64848 1.78530 2.09248 2.21221 2.62822 3.10836 3.26176 3.78599 3.94497 4.06487 4.12147 4.17954 4.26117 4.33675 4.49288 4.57165 4.72337 4.82364 4.96481 5.03714 5.22477 5.30660 5.41817 5.46713 5.61941 5.84209 6.02896 6.19460 6.43670 6.92686 6.99804 7.31014 7.53934 7.77402 8.66909 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.007020 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.642389 B = 3987.828662 C = 5229.973955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C -0.009 4.009 3 Si 1.004 2.996 4 H -0.244 1.244 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.362 4.362 8 H 0.134 0.866 9 N -0.420 5.420 10 C 0.448 3.552 11 O -0.610 6.610 12 C 0.142 3.858 13 N -0.369 5.369 14 C 0.046 3.954 15 C -0.281 4.281 16 C 0.023 3.977 17 N -0.327 5.327 18 C 0.437 3.563 19 C -0.176 4.176 20 C -0.072 4.072 21 C -0.197 4.197 22 C 0.097 3.903 23 N -0.522 5.522 24 H 0.270 0.730 25 H 0.148 0.852 26 H 0.120 0.880 27 H 0.209 0.791 28 H 0.177 0.823 29 H 0.203 0.797 30 H 0.102 0.898 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 -2.579 0.211 5.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.212 4.212 3 Si 0.827 3.173 4 H -0.167 1.167 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.487 4.487 8 H 0.151 0.849 9 N -0.139 5.139 10 C 0.237 3.763 11 O -0.494 6.494 12 C 0.018 3.982 13 N -0.152 5.152 14 C -0.099 4.099 15 C -0.310 4.310 16 C -0.164 4.164 17 N -0.149 5.149 18 C 0.211 3.789 19 C -0.198 4.198 20 C -0.098 4.098 21 C -0.217 4.217 22 C -0.061 4.061 23 N -0.235 5.235 24 H 0.081 0.919 25 H 0.165 0.835 26 H 0.138 0.862 27 H 0.226 0.774 28 H 0.194 0.806 29 H 0.220 0.780 30 H 0.120 0.880 31 H 0.171 0.829 32 H 0.180 0.820 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.338 -2.201 0.152 4.867 hybrid contribution 0.047 0.676 0.188 0.704 sum 4.385 -1.525 0.340 4.655 Atomic orbital electron populations 1.69704 1.07294 1.27795 1.47098 1.26244 0.96479 1.03226 0.95208 0.84686 0.79275 0.76191 0.77118 1.16663 1.21369 1.20861 1.20362 0.93841 0.81673 1.52831 0.84907 1.41554 1.02400 1.07059 1.62884 1.20768 0.90913 0.82648 0.81979 1.90615 1.70881 1.31587 1.56337 1.21365 0.90857 0.79069 1.06939 1.48372 1.31395 1.10910 1.24507 1.23292 0.93539 0.95256 0.97807 1.21838 1.08915 0.97577 1.02637 1.24454 0.95375 0.97486 0.99034 1.77423 1.23070 1.00217 1.14161 1.17685 0.84510 0.88083 0.88575 1.21668 0.96133 1.04690 0.97295 1.21534 0.92785 0.95893 0.99554 1.22122 1.01925 1.04989 0.92627 1.22746 0.88471 0.95393 0.99459 1.67070 1.11499 1.14057 1.30887 0.91911 0.83455 0.86245 0.77447 0.80569 0.78000 0.87975 0.82874 0.82010 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.84 9.75 21.65 0.21 -45.62 16 2 C -0.01 -0.43 5.44 84.91 0.46 0.04 16 3 Si 1.00 37.85 29.56 68.60 2.03 39.87 16 4 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 5 H -0.29 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.36 -17.41 9.37 84.01 0.79 -16.62 16 8 H 0.13 5.44 6.33 -2.91 -0.02 5.42 16 9 N -0.42 -21.71 2.74 -464.37 -1.27 -22.98 16 10 C 0.45 22.22 7.62 87.66 0.67 22.88 16 11 O -0.61 -34.99 15.70 -2.99 -0.05 -35.04 16 12 C 0.14 5.30 5.43 85.63 0.46 5.76 16 13 N -0.37 -13.73 3.39 -351.80 -1.19 -14.93 16 14 C 0.05 1.31 11.45 83.54 0.96 2.27 16 15 C -0.28 -7.52 10.80 21.99 0.24 -7.28 16 16 C 0.02 0.72 12.02 85.24 1.02 1.75 16 17 N -0.33 -13.47 11.66 -57.02 -0.66 -14.14 16 18 C 0.44 23.18 2.94 132.91 0.39 23.57 16 19 C -0.18 -8.55 9.29 22.50 0.21 -8.34 16 20 C -0.07 -2.85 10.17 22.44 0.23 -2.62 16 21 C -0.20 -7.26 10.11 22.39 0.23 -7.03 16 22 C 0.10 4.15 11.18 84.66 0.95 5.10 16 23 N -0.52 -27.32 9.84 -192.95 -1.90 -29.22 16 24 H 0.27 13.53 8.31 -92.70 -0.77 12.76 16 25 H 0.15 4.43 7.54 -2.38 -0.02 4.42 16 26 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 27 H 0.21 3.95 8.06 -2.91 -0.02 3.93 16 28 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 29 H 0.20 4.89 8.06 -2.91 -0.02 4.87 16 30 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 31 H 0.15 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 33 H 0.16 5.70 8.06 -2.91 -0.02 5.68 16 Total: -1.00 -76.87 296.49 4.90 -71.98 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 1.13 Total: 30.60 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 6.60 Total: 19.48 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -4.82 Total: -126.89 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.05 Total: -35.04 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.87 kcal Total: -76.87 4.90 -71.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001437238598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.643 kcal (2) G-P(sol) polarization free energy of solvation -76.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds