Wall clock time and date at job start Mon Mar 30 2020 00:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47230 * 55.73948 * 3 2 1 5 5 C 1.36875 * 119.99471 * 96.75940 * 4 3 2 6 6 H 1.07999 * 120.00035 * 147.94663 * 5 4 3 7 7 C 1.39054 * 120.00484 * 327.94540 * 5 4 3 8 8 N 1.31362 * 119.99466 * 339.99020 * 7 5 4 9 9 Si 1.86793 * 120.00198 * 159.98447 * 7 5 4 10 10 H 1.48503 * 109.47275 * 60.00459 * 9 7 5 11 11 H 1.48504 * 109.46772 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47348 * 300.00169 * 9 7 5 13 13 C 1.34766 * 120.00346 * 276.75858 * 4 3 2 14 14 O 1.21592 * 120.00074 * 183.92859 * 13 4 3 15 15 C 1.47714 * 120.00155 * 3.92890 * 13 4 3 16 16 C 1.40022 * 120.94824 * 307.69742 * 15 13 4 17 17 N 1.32135 * 118.91589 * 179.73208 * 16 15 13 18 18 C 1.31871 * 120.97397 * 0.53584 * 17 16 15 19 19 C 1.50702 * 118.94569 * 179.72072 * 18 17 16 20 20 C 1.53007 * 117.49355 * 8.64018 * 19 18 17 21 21 C 1.53003 * 59.99982 * 252.51025 * 20 19 18 22 22 N 1.31881 * 122.11618 * 359.73575 * 18 17 16 23 23 C 1.32133 * 120.97136 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.46938 * 295.74363 * 3 2 1 25 25 H 1.08995 * 109.47099 * 175.74561 * 3 2 1 26 26 H 0.97000 * 119.99972 * 180.02562 * 8 7 5 27 27 H 1.07997 * 120.53576 * 359.97438 * 16 15 13 28 28 H 1.08990 * 115.55511 * 154.34420 * 19 18 17 29 29 H 1.08992 * 117.50336 * 359.97438 * 20 19 18 30 30 H 1.08997 * 117.49950 * 145.02773 * 20 19 18 31 31 H 1.08999 * 117.50212 * 252.51538 * 21 20 19 32 32 H 1.08998 * 117.49690 * 107.48605 * 21 20 19 33 33 H 1.08004 * 120.54496 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.7767 -1.1415 5 6 3.4561 -0.1406 -2.2990 6 1 4.2477 -0.5435 -2.9132 7 6 2.8019 1.0245 -2.6841 8 7 1.6178 1.3066 -2.1903 9 14 3.6069 2.1882 -3.9035 10 1 3.8504 1.4740 -5.1826 11 1 2.7114 3.3477 -4.1462 12 1 4.8988 2.6682 -3.3508 13 6 3.1925 -2.1179 -1.0520 14 8 3.6648 -2.7565 -1.9727 15 6 2.7236 -2.8124 0.1645 16 6 3.1653 -2.4190 1.4336 17 7 2.7159 -3.0649 2.4951 18 6 1.8733 -4.0716 2.3707 19 6 1.3949 -4.7800 3.6117 20 6 1.7580 -4.1607 4.9629 21 6 2.4511 -5.4431 4.4982 22 7 1.4360 -4.4786 1.1949 23 6 1.8291 -3.8864 0.0810 24 1 2.9715 -0.4455 0.9257 25 1 2.9709 1.0256 -0.0762 26 1 1.1612 2.1191 -2.4592 27 1 3.8590 -1.5985 1.5433 28 1 0.4266 -5.2732 3.5278 29 1 2.3432 -3.2413 4.9542 30 1 1.0285 -4.2465 5.7682 31 1 2.1774 -6.3725 4.9976 32 1 3.4919 -5.3671 4.1835 33 1 1.4669 -4.2256 -0.8783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442986091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:44 Heat of formation + Delta-G solvation = 87.523490 kcal Electronic energy + Delta-G solvation = -20185.017463 eV Core-core repulsion = 17019.995701 eV Total energy + Delta-G solvation = -3165.021763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03570 -38.81056 -36.94854 -35.90219 -34.42343 -33.60872 -32.33694 -31.26239 -27.65919 -26.19762 -24.47286 -24.38642 -22.41094 -21.47175 -19.98487 -18.12904 -17.69739 -17.23551 -16.59926 -16.21090 -15.34455 -15.02941 -14.64138 -14.36956 -14.09257 -13.57887 -13.38810 -13.27628 -12.88204 -12.22017 -12.09931 -11.75980 -11.61697 -11.51599 -11.20741 -11.16738 -10.88445 -10.77160 -10.68426 -10.57349 -10.53195 -10.39727 -9.40481 -9.08724 -9.08115 -8.79268 -8.11010 -6.64995 -4.24969 0.85019 1.25280 3.02188 3.13589 3.15629 3.32341 3.49245 3.73070 3.82971 3.89118 3.99452 4.11699 4.28169 4.54185 4.73465 4.74756 4.81326 4.96852 5.02650 5.04032 5.18085 5.45254 5.51378 5.56106 5.75711 5.82452 5.93658 6.07393 6.14902 6.17319 6.50270 7.08318 7.31076 7.77906 8.08318 8.22391 8.67245 8.78127 8.96213 9.51090 10.39699 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.032971 B = 0.005065 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.031381 B = 5526.719159 C = 5855.766779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.236 3.764 3 C 0.209 3.791 4 N -0.424 5.424 5 C -0.321 4.321 6 H 0.108 0.892 7 C 0.039 3.961 8 N -0.859 5.859 9 Si 0.930 3.070 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.502 3.498 14 O -0.556 6.556 15 C -0.205 4.205 16 C 0.160 3.840 17 N -0.515 5.515 18 C 0.340 3.660 19 C -0.099 4.099 20 C -0.154 4.154 21 C -0.157 4.157 22 N -0.513 5.513 23 C 0.189 3.811 24 H 0.090 0.910 25 H 0.120 0.880 26 H 0.277 0.723 27 H 0.178 0.822 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 -4.792 11.461 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.083 4.083 3 C 0.082 3.918 4 N -0.143 5.143 5 C -0.447 4.447 6 H 0.126 0.874 7 C -0.168 4.168 8 N -0.495 5.495 9 Si 0.756 3.244 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.289 3.711 14 O -0.438 6.438 15 C -0.213 4.213 16 C -0.007 4.007 17 N -0.229 5.229 18 C 0.073 3.927 19 C -0.119 4.119 20 C -0.192 4.192 21 C -0.195 4.195 22 N -0.226 5.226 23 C 0.022 3.978 24 H 0.108 0.892 25 H 0.138 0.862 26 H 0.088 0.912 27 H 0.195 0.805 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.229 -5.391 11.753 12.988 hybrid contribution 0.774 1.256 -1.625 2.195 sum 2.003 -4.136 10.127 11.121 Atomic orbital electron populations 1.80879 1.13446 1.09194 1.10164 1.29068 0.95247 0.92528 0.91468 1.18994 0.82279 1.00275 0.90259 1.43434 1.55513 1.03084 1.12301 1.19601 1.17775 1.06480 1.00887 0.87449 1.25521 0.94093 0.99181 0.97973 1.69783 1.10449 1.25772 1.43483 0.85923 0.78972 0.79052 0.80459 1.19492 1.20900 1.19385 1.17725 0.84797 0.82421 0.86116 1.90680 1.48234 1.64936 1.39960 1.22155 1.01746 1.00233 0.97173 1.23516 0.94668 0.95858 0.86677 1.68022 1.12591 1.08435 1.33825 1.22109 0.89304 0.89254 0.91999 1.20592 1.00574 1.03920 0.86815 1.23016 1.03165 0.98151 0.94833 1.22971 0.97536 0.97121 1.01880 1.68119 1.25569 1.30311 0.98578 1.23257 0.89043 0.88422 0.97074 0.89231 0.86220 0.91226 0.80526 0.85511 0.87077 0.88347 0.88119 0.88543 0.81054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.96 18.54 42.15 0.78 -10.18 16 2 C 0.24 5.17 12.82 -20.76 -0.27 4.91 16 3 C 0.21 3.95 4.88 -6.83 -0.03 3.92 16 4 N -0.42 -9.44 2.55 -119.06 -0.30 -9.75 16 5 C -0.32 -7.80 9.02 -15.00 -0.14 -7.94 16 6 H 0.11 2.71 7.61 -52.49 -0.40 2.32 16 7 C 0.04 0.93 4.84 -17.45 -0.08 0.85 16 8 N -0.86 -21.33 10.07 55.50 0.56 -20.77 16 9 Si 0.93 18.67 29.60 -169.99 -5.03 13.64 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 12 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 13 C 0.50 11.16 7.13 -12.39 -0.09 11.07 16 14 O -0.56 -14.23 16.86 5.28 0.09 -14.14 16 15 C -0.21 -3.84 4.91 -104.69 -0.51 -4.35 16 16 C 0.16 2.54 9.17 -16.75 -0.15 2.38 16 17 N -0.52 -8.06 9.31 -10.38 -0.10 -8.16 16 18 C 0.34 5.41 7.31 -157.05 -1.15 4.26 16 19 C -0.10 -1.22 6.23 -91.77 -0.57 -1.79 16 20 C -0.15 -1.56 10.01 -26.73 -0.27 -1.82 16 21 C -0.16 -1.56 10.23 -26.73 -0.27 -1.83 16 22 N -0.51 -8.95 10.31 -10.37 -0.11 -9.06 16 23 C 0.19 3.46 11.07 -16.75 -0.19 3.28 16 24 H 0.09 1.34 3.98 -51.93 -0.21 1.14 16 25 H 0.12 2.18 7.36 -51.93 -0.38 1.80 16 26 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.18 2.26 6.45 -52.49 -0.34 1.93 16 28 H 0.13 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.11 1.23 7.53 -51.93 -0.39 0.84 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.17 3.00 8.06 -52.48 -0.42 2.57 16 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -30.63 298.04 -6.30 -36.94 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -2.97 Total: 4.06 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: -3.72 Total: 12.92 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.83 Total: -57.91 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.63 -6.30 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442986091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.460 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds