Wall clock time and date at job start Mon Mar 30 2020 00:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47230 * 55.73948 * 3 2 1 5 5 C 1.36875 * 119.99471 * 96.75940 * 4 3 2 6 6 H 1.07999 * 120.00035 * 147.94663 * 5 4 3 7 7 C 1.39054 * 120.00484 * 327.94540 * 5 4 3 8 8 N 1.31362 * 119.99466 * 339.99020 * 7 5 4 9 9 Si 1.86793 * 120.00198 * 159.98447 * 7 5 4 10 10 H 1.48503 * 109.47275 * 60.00459 * 9 7 5 11 11 H 1.48504 * 109.46772 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47348 * 300.00169 * 9 7 5 13 13 C 1.34766 * 120.00346 * 276.75858 * 4 3 2 14 14 O 1.21592 * 120.00074 * 183.92859 * 13 4 3 15 15 C 1.47714 * 120.00155 * 3.92890 * 13 4 3 16 16 C 1.40022 * 120.94824 * 307.69742 * 15 13 4 17 17 N 1.32135 * 118.91589 * 179.73208 * 16 15 13 18 18 C 1.31871 * 120.97397 * 0.53584 * 17 16 15 19 19 C 1.50702 * 118.94569 * 179.72072 * 18 17 16 20 20 C 1.53007 * 117.49355 * 8.64018 * 19 18 17 21 21 C 1.53003 * 59.99982 * 252.51025 * 20 19 18 22 22 N 1.31881 * 122.11618 * 359.73575 * 18 17 16 23 23 C 1.32133 * 120.97136 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.46938 * 295.74363 * 3 2 1 25 25 H 1.08995 * 109.47099 * 175.74561 * 3 2 1 26 26 H 0.97000 * 119.99972 * 180.02562 * 8 7 5 27 27 H 1.07997 * 120.53576 * 359.97438 * 16 15 13 28 28 H 1.08990 * 115.55511 * 154.34420 * 19 18 17 29 29 H 1.08992 * 117.50336 * 359.97438 * 20 19 18 30 30 H 1.08997 * 117.49950 * 145.02773 * 20 19 18 31 31 H 1.08999 * 117.50212 * 252.51538 * 21 20 19 32 32 H 1.08998 * 117.49690 * 107.48605 * 21 20 19 33 33 H 1.08004 * 120.54496 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.7767 -1.1415 5 6 3.4561 -0.1406 -2.2990 6 1 4.2477 -0.5435 -2.9132 7 6 2.8019 1.0245 -2.6841 8 7 1.6178 1.3066 -2.1903 9 14 3.6069 2.1882 -3.9035 10 1 3.8504 1.4740 -5.1826 11 1 2.7114 3.3477 -4.1462 12 1 4.8988 2.6682 -3.3508 13 6 3.1925 -2.1179 -1.0520 14 8 3.6648 -2.7565 -1.9727 15 6 2.7236 -2.8124 0.1645 16 6 3.1653 -2.4190 1.4336 17 7 2.7159 -3.0649 2.4951 18 6 1.8733 -4.0716 2.3707 19 6 1.3949 -4.7800 3.6117 20 6 1.7580 -4.1607 4.9629 21 6 2.4511 -5.4431 4.4982 22 7 1.4360 -4.4786 1.1949 23 6 1.8291 -3.8864 0.0810 24 1 2.9715 -0.4455 0.9257 25 1 2.9709 1.0256 -0.0762 26 1 1.1612 2.1191 -2.4592 27 1 3.8590 -1.5985 1.5433 28 1 0.4266 -5.2732 3.5278 29 1 2.3432 -3.2413 4.9542 30 1 1.0285 -4.2465 5.7682 31 1 2.1774 -6.3725 4.9976 32 1 3.4919 -5.3671 4.1835 33 1 1.4669 -4.2256 -0.8783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442986091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:44 Heat of formation + Delta-G solvation = 68.846455 kcal Electronic energy + Delta-G solvation = -20185.827360 eV Core-core repulsion = 17019.995701 eV Total energy + Delta-G solvation = -3165.831660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.38785 -40.45696 -37.92213 -37.67307 -36.22627 -34.96578 -34.02970 -32.73494 -29.32493 -27.71278 -25.99357 -25.73570 -23.18060 -22.66677 -21.54831 -19.84971 -19.08672 -18.79332 -17.90657 -17.78016 -16.93300 -16.41914 -15.92615 -15.77353 -15.38681 -15.12740 -14.98681 -14.83158 -14.45344 -13.87720 -13.49367 -13.37001 -13.15723 -12.85490 -12.62078 -12.50383 -12.34541 -12.28790 -12.14408 -11.86970 -11.83595 -11.37258 -11.13981 -10.70467 -10.42801 -10.26261 -9.91626 -8.46654 -6.14059 -0.49906 -0.09898 1.38339 1.49804 1.58680 1.68587 1.93921 2.17767 2.29982 2.45364 2.67552 2.87833 2.92317 2.95297 3.18193 3.37840 3.49401 3.66125 3.92473 3.97533 4.01388 4.14973 4.31659 4.41497 4.63056 4.69200 4.83548 4.96449 5.15561 5.24401 5.37471 5.42133 5.73540 6.00929 6.27113 6.90738 6.93934 6.98017 7.16977 7.73378 8.56217 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.032971 B = 0.005065 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.031381 B = 5526.719159 C = 5855.766779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.248 3.752 3 C 0.211 3.789 4 N -0.433 5.433 5 C -0.344 4.344 6 H 0.090 0.910 7 C 0.011 3.989 8 N -0.884 5.884 9 Si 0.991 3.009 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.252 1.252 13 C 0.505 3.495 14 O -0.599 6.599 15 C -0.227 4.227 16 C 0.174 3.826 17 N -0.511 5.511 18 C 0.340 3.660 19 C -0.128 4.128 20 C -0.140 4.140 21 C -0.140 4.140 22 N -0.526 5.526 23 C 0.181 3.819 24 H 0.133 0.867 25 H 0.130 0.870 26 H 0.275 0.725 27 H 0.211 0.789 28 H 0.135 0.865 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 -4.641 13.685 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.070 4.070 3 C 0.085 3.915 4 N -0.151 5.151 5 C -0.471 4.471 6 H 0.108 0.892 7 C -0.193 4.193 8 N -0.520 5.520 9 Si 0.815 3.185 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.176 1.176 13 C 0.293 3.707 14 O -0.484 6.484 15 C -0.235 4.235 16 C 0.007 3.993 17 N -0.224 5.224 18 C 0.074 3.926 19 C -0.148 4.148 20 C -0.178 4.178 21 C -0.179 4.179 22 N -0.239 5.239 23 C 0.014 3.986 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.085 0.915 27 H 0.227 0.773 28 H 0.153 0.847 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.107 0.893 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.894 -5.242 14.011 15.079 hybrid contribution 0.552 1.081 -2.228 2.537 sum 2.445 -4.161 11.783 12.733 Atomic orbital electron populations 1.80873 1.14787 1.10660 1.11481 1.29632 0.95862 0.91251 0.90264 1.19351 0.80467 1.00946 0.90762 1.43549 1.55384 1.03407 1.12741 1.19591 1.18096 1.07326 1.02041 0.89243 1.26168 0.94121 0.99812 0.99199 1.69872 1.11341 1.26000 1.44815 0.85012 0.78697 0.76871 0.77944 1.20514 1.20924 1.17597 1.18150 0.83466 0.82397 0.86650 1.90639 1.49922 1.65906 1.41923 1.21835 1.03581 1.01195 0.96856 1.23981 0.93912 0.95950 0.85465 1.68209 1.12665 1.08441 1.33067 1.22949 0.88099 0.88798 0.92714 1.20821 1.01894 1.05760 0.86312 1.23122 1.03158 0.97846 0.93650 1.23083 0.96345 0.98331 1.00102 1.68216 1.26242 1.30652 0.98813 1.23307 0.89161 0.88474 0.97613 0.85025 0.85202 0.91454 0.77295 0.84734 0.87917 0.85811 0.85468 0.89342 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.84 18.54 20.01 0.37 -23.47 16 2 C 0.25 10.74 12.82 89.44 1.15 11.89 16 3 C 0.21 7.70 4.88 84.57 0.41 8.12 16 4 N -0.43 -19.22 2.55 -648.88 -1.66 -20.88 16 5 C -0.34 -16.86 9.02 84.10 0.76 -16.11 16 6 H 0.09 4.64 7.61 -2.91 -0.02 4.62 16 7 C 0.01 0.54 4.84 84.96 0.41 0.95 16 8 N -0.88 -43.81 10.07 21.68 0.22 -43.59 16 9 Si 0.99 38.04 29.60 68.60 2.03 40.07 16 10 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 13 C 0.50 22.66 7.13 86.75 0.62 23.28 16 14 O -0.60 -31.55 16.86 -4.01 -0.07 -31.62 16 15 C -0.23 -8.40 4.91 -19.91 -0.10 -8.49 16 16 C 0.17 5.18 9.17 85.08 0.78 5.96 16 17 N -0.51 -14.81 9.31 -186.74 -1.74 -16.55 16 18 C 0.34 10.25 7.31 138.70 1.01 11.26 16 19 C -0.13 -2.84 6.23 -11.54 -0.07 -2.91 16 20 C -0.14 -2.35 10.01 30.60 0.31 -2.05 16 21 C -0.14 -2.33 10.23 30.60 0.31 -2.01 16 22 N -0.53 -18.05 10.31 -186.73 -1.93 -19.97 16 23 C 0.18 6.68 11.07 85.08 0.94 7.62 16 24 H 0.13 3.60 3.98 -2.39 -0.01 3.59 16 25 H 0.13 4.52 7.36 -2.39 -0.02 4.50 16 26 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 27 H 0.21 4.65 6.45 -2.91 -0.02 4.63 16 28 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.10 1.94 7.53 -2.39 -0.02 1.92 16 30 H 0.12 1.47 8.14 -2.39 -0.02 1.46 16 31 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.17 6.10 8.06 -2.91 -0.02 6.08 16 Total: -1.00 -67.02 298.04 4.93 -62.10 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.16 Total: 16.40 kcal Atomic # 6 Polarization: 30.97 SS G_CDS: 6.53 Total: 37.51 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -4.73 Total: -124.45 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.07 Total: -31.62 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -67.02 4.93 -62.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442986091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.943 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds