Wall clock time and date at job start Mon Mar 30 2020 00:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86806 * 120.00234 * 2 1 4 4 H 1.48500 * 109.46896 * 240.00183 * 3 2 1 5 5 H 1.48495 * 109.46850 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46950 * 119.99959 * 3 2 1 7 7 C 1.40033 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00388 * 193.84411 * 7 2 1 9 9 C 1.41552 * 119.99470 * 13.83713 * 7 2 1 10 10 C 1.41174 * 120.99155 * 201.18063 * 9 7 2 11 11 C 1.37597 * 119.01068 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10888 * 359.71562 * 11 10 9 13 13 C 1.32469 * 122.23167 * 0.57960 * 12 11 10 14 14 N 1.39468 * 119.58036 * 179.70555 * 13 12 11 15 15 C 1.34778 * 119.99624 * 353.26149 * 14 13 12 16 16 O 1.21272 * 120.00331 * 4.63230 * 15 14 13 17 17 C 1.50700 * 119.99797 * 184.63547 * 15 14 13 18 18 C 1.50703 * 109.47329 * 179.97438 * 17 15 14 19 19 N 1.30498 * 125.64520 * 305.02537 * 18 17 15 20 20 C 1.34136 * 109.25095 * 179.97438 * 19 18 17 21 21 C 1.34671 * 108.02041 * 0.02562 * 20 19 18 22 22 N 1.35043 * 125.64928 * 124.71588 * 18 17 15 23 23 H 0.97000 * 126.39437 * 0.02562 * 22 18 17 24 24 C 1.38603 * 120.83837 * 359.42150 * 13 12 11 25 25 H 0.97007 * 119.99763 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.49679 * 0.04166 * 10 9 7 27 27 H 1.08004 * 119.44019 * 179.97438 * 11 10 9 28 28 H 0.96996 * 120.00269 * 172.99063 * 14 13 12 29 29 H 1.09002 * 109.47076 * 300.00101 * 17 15 14 30 30 H 1.09009 * 109.47185 * 59.99778 * 17 15 14 31 31 H 1.07998 * 125.98805 * 180.02562 * 20 19 18 32 32 H 1.07999 * 126.58846 * 179.97438 * 21 20 19 33 33 H 1.07996 * 120.59831 * 180.30018 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0640 -1.2264 0.2232 9 6 1.3306 -2.4206 -0.2943 10 6 1.8554 -3.6659 0.1141 11 6 1.1637 -4.8149 -0.1937 12 7 0.0219 -4.7673 -0.8559 13 6 -0.5099 -3.6255 -1.2661 14 7 -1.7158 -3.6401 -1.9667 15 6 -2.2635 -4.8133 -2.3409 16 8 -1.7530 -5.8581 -1.9967 17 6 -3.5103 -4.8268 -3.1873 18 6 -3.9137 -6.2520 -3.4649 19 7 -3.1530 -7.1671 -4.0006 20 6 -3.8414 -8.3144 -4.0959 21 6 -5.0757 -8.1019 -3.6009 22 7 -5.1202 -6.7954 -3.1951 23 1 -5.8777 -6.3434 -2.7916 24 6 0.1138 -2.4161 -1.0028 25 1 -0.4850 0.8401 -0.0004 26 1 2.7859 -3.7161 0.6602 27 1 1.5591 -5.7714 0.1150 28 1 -2.1623 -2.8061 -2.1811 29 1 -4.3151 -4.3178 -2.6568 30 1 -3.3154 -4.3146 -4.1296 31 1 -3.4708 -9.2453 -4.4989 32 1 -5.8754 -8.8246 -3.5332 33 1 -0.3256 -1.4871 -1.3349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001445587905.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:29 Heat of formation + Delta-G solvation = 39.736884 kcal Electronic energy + Delta-G solvation = -19532.916045 eV Core-core repulsion = 16365.822099 eV Total energy + Delta-G solvation = -3167.093945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.93603 -41.08586 -39.43606 -36.11781 -35.42796 -33.42977 -33.06103 -32.36825 -30.41877 -28.21904 -27.88255 -23.88387 -23.63502 -22.45193 -21.89931 -21.03152 -19.47462 -18.90825 -18.29376 -17.41753 -16.96623 -16.47030 -16.02377 -15.88955 -15.59592 -15.17514 -14.94564 -14.64006 -14.35342 -14.34376 -14.20578 -13.83778 -13.21071 -12.98382 -12.86913 -12.66580 -12.02986 -11.91619 -11.45111 -11.14236 -10.97020 -10.95564 -10.82185 -9.94126 -9.57617 -9.29890 -8.83939 -8.57556 -6.56206 0.78565 1.02949 1.10505 1.42762 1.53512 1.59439 1.92686 1.99730 2.21556 2.29165 2.53698 2.83346 3.39543 3.77202 3.84740 4.07050 4.30384 4.42301 4.46015 4.61178 4.76850 4.81538 4.90000 4.95003 5.13067 5.17432 5.27120 5.51097 5.68009 5.86097 5.94493 6.18444 6.50186 6.57945 6.66937 6.81964 6.85109 7.26481 7.40540 7.89555 8.27542 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038050 B = 0.003834 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.693542 B = 7301.581506 C = 7868.263567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.039 3.961 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.482 4.482 8 H 0.082 0.918 9 C 0.110 3.890 10 C -0.301 4.301 11 C 0.110 3.890 12 N -0.582 5.582 13 C 0.333 3.667 14 N -0.651 5.651 15 C 0.494 3.506 16 O -0.510 6.510 17 C -0.041 4.041 18 C 0.200 3.800 19 N -0.518 5.518 20 C -0.071 4.071 21 C -0.032 4.032 22 N -0.552 5.552 23 H 0.436 0.564 24 C -0.264 4.264 25 H 0.293 0.707 26 H 0.113 0.887 27 H 0.144 0.856 28 H 0.425 0.575 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.176 0.824 32 H 0.220 0.780 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 -2.351 -6.082 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.178 4.178 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.512 4.512 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.325 4.325 11 C -0.043 4.043 12 N -0.302 5.302 13 C 0.108 3.892 14 N -0.300 5.300 15 C 0.279 3.721 16 O -0.381 6.381 17 C -0.082 4.082 18 C -0.065 4.065 19 N -0.238 5.238 20 C -0.219 4.219 21 C -0.167 4.167 22 N -0.157 5.157 23 H 0.278 0.722 24 C -0.289 4.289 25 H 0.105 0.895 26 H 0.132 0.868 27 H 0.161 0.839 28 H 0.264 0.736 29 H 0.171 0.829 30 H 0.160 0.840 31 H 0.193 0.807 32 H 0.237 0.763 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.181 -3.713 -6.337 15.090 hybrid contribution -0.182 1.555 0.751 1.736 sum -13.363 -2.159 -5.587 14.644 Atomic orbital electron populations 1.69756 1.08874 1.30973 1.33804 1.26820 0.95701 1.04500 0.90812 0.85136 0.78738 0.75171 0.79974 1.18559 1.18678 1.18621 1.19877 0.97242 0.91412 1.42696 0.90002 1.18017 0.91347 0.93162 0.87306 1.22053 1.04713 0.93796 1.11946 1.22151 0.90395 0.97645 0.94154 1.67346 1.14909 1.28026 1.19919 1.18494 0.87594 0.90181 0.92977 1.43404 1.21036 1.10397 1.55131 1.21206 0.86658 0.83236 0.80973 1.90820 1.62072 1.32471 1.52767 1.20017 0.95844 0.89831 1.02548 1.22551 0.83648 0.96825 1.03479 1.70184 1.32682 1.01472 1.19418 1.22784 0.92899 0.97918 1.08288 1.23304 1.01506 0.86657 1.05248 1.43172 1.13794 1.10842 1.47884 0.72241 1.21760 1.01292 0.96131 1.09724 0.89546 0.86847 0.83892 0.73634 0.82944 0.84002 0.80691 0.76334 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.58 10.59 21.84 0.23 -38.35 16 2 C 0.04 1.83 5.28 85.29 0.45 2.28 16 3 Si 0.99 35.48 29.58 68.60 2.03 37.51 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 5 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.48 -25.09 9.14 23.52 0.22 -24.88 16 8 H 0.08 4.09 7.88 -2.91 -0.02 4.07 16 9 C 0.11 5.96 5.64 -21.11 -0.12 5.84 16 10 C -0.30 -15.47 9.90 22.84 0.23 -15.25 16 11 C 0.11 5.60 11.15 84.50 0.94 6.55 16 12 N -0.58 -31.31 7.86 -193.52 -1.52 -32.83 16 13 C 0.33 16.63 7.41 132.75 0.98 17.62 16 14 N -0.65 -24.95 5.39 -308.66 -1.66 -26.61 16 15 C 0.49 18.46 7.78 87.66 0.68 19.14 16 16 O -0.51 -25.04 13.81 -3.01 -0.04 -25.08 16 17 C -0.04 -0.95 6.33 29.10 0.18 -0.76 16 18 C 0.20 5.49 6.96 138.13 0.96 6.45 16 19 N -0.52 -18.18 10.58 -188.12 -1.99 -20.17 16 20 C -0.07 -1.95 11.87 83.52 0.99 -0.96 16 21 C -0.03 -0.61 12.04 83.09 1.00 0.39 16 22 N -0.55 -10.25 6.15 -186.27 -1.15 -11.39 16 23 H 0.44 4.26 8.96 -92.71 -0.83 3.43 16 24 C -0.26 -13.66 8.66 22.98 0.20 -13.46 16 25 H 0.29 12.39 8.29 -92.70 -0.77 11.62 16 26 H 0.11 5.33 8.06 -2.91 -0.02 5.31 16 27 H 0.14 6.39 8.06 -2.91 -0.02 6.37 16 28 H 0.43 12.47 8.70 -92.71 -0.81 11.66 16 29 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.14 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.14 6.92 5.88 -2.91 -0.02 6.90 16 Total: -1.00 -81.47 295.67 2.16 -79.31 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -0.46 Total: 34.66 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.72 Total: 2.97 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -6.09 Total: -129.36 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.04 Total: -25.08 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -81.47 2.16 -79.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445587905.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.048 kcal (2) G-P(sol) polarization free energy of solvation -81.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds