Wall clock time and date at job start Mon Mar 30 2020 01:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40300 * 126.84339 * 2 1 4 4 N 1.28729 * 108.18945 * 180.02562 * 3 2 1 5 5 C 1.33263 * 109.99996 * 359.72989 * 4 3 2 6 6 C 1.35858 * 108.86659 * 0.44431 * 5 4 3 7 7 N 1.39376 * 126.68524 * 179.83181 * 6 5 4 8 8 C 1.34772 * 119.99919 * 359.41380 * 7 6 5 9 9 O 1.21642 * 119.99961 * 0.27117 * 8 7 6 10 10 C 1.47366 * 120.00186 * 180.27649 * 8 7 6 11 11 C 1.39262 * 120.28614 * 355.34309 * 10 8 7 12 12 C 1.38191 * 120.08906 * 179.97438 * 11 10 8 13 13 C 1.38846 * 120.68174 * 0.02562 * 12 11 10 14 14 C 1.37572 * 120.58111 * 0.03214 * 13 12 11 15 15 C 1.40721 * 119.88016 * 359.65247 * 14 13 12 16 16 C 1.40862 * 120.33087 * 180.32735 * 15 14 13 17 17 H 1.07994 * 120.00192 * 215.84304 * 16 15 14 18 18 C 1.40286 * 120.00034 * 35.83735 * 16 15 14 19 19 N 1.30624 * 119.99707 * 8.97990 * 18 16 15 20 20 Si 1.86804 * 119.99913 * 188.97507 * 18 16 15 21 21 H 1.48503 * 109.46912 * 90.00125 * 20 18 16 22 22 H 1.48497 * 109.47027 * 210.00324 * 20 18 16 23 23 H 1.48501 * 109.47160 * 330.00489 * 20 18 16 24 24 H 1.08997 * 109.46794 * 269.99855 * 1 2 3 25 25 H 1.08998 * 109.47056 * 30.00116 * 1 2 3 26 26 H 1.09005 * 109.46908 * 149.99772 * 1 2 3 27 27 H 1.08006 * 125.56822 * 180.27784 * 5 4 3 28 28 H 0.96998 * 119.99971 * 179.69101 * 7 6 5 29 29 H 1.08003 * 119.95437 * 359.97438 * 11 10 8 30 30 H 1.07999 * 119.65948 * 180.02562 * 12 11 10 31 31 H 1.08008 * 119.70931 * 180.02562 * 13 12 11 32 32 H 1.07998 * 120.06260 * 179.97438 * 14 13 12 33 33 H 0.97000 * 119.99721 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3063 1.1228 0.0000 4 7 3.5260 0.7110 -0.0005 5 6 3.5573 -0.6212 0.0050 6 6 2.2824 -1.0906 -0.0006 7 7 1.8872 -2.4272 -0.0009 8 6 2.8154 -3.4043 -0.0071 9 8 3.9981 -3.1197 -0.0074 10 6 2.3976 -4.8175 -0.0135 11 6 1.0493 -5.1517 0.0844 12 6 0.6620 -6.4782 0.0775 13 6 1.6058 -7.4913 -0.0260 14 6 2.9452 -7.1928 -0.1231 15 6 3.3659 -5.8499 -0.1250 16 6 4.7344 -5.5333 -0.2308 17 1 5.1359 -4.6868 0.3063 18 6 5.5757 -6.3176 -1.0339 19 7 5.0660 -7.2293 -1.8183 20 14 7.4249 -6.0582 -0.9814 21 1 8.0180 -6.9328 0.0619 22 1 8.0101 -6.3977 -2.3034 23 1 7.7166 -4.6378 -0.6610 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 4.4504 -1.2286 0.0101 28 1 0.9442 -2.6541 -0.0006 29 1 0.3052 -4.3731 0.1659 30 1 -0.3856 -6.7295 0.1534 31 1 1.2856 -8.5228 -0.0303 32 1 3.6722 -7.9874 -0.2028 33 1 5.6478 -7.7713 -2.3739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472091012.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:43 Heat of formation + Delta-G solvation = 73.264406 kcal Electronic energy + Delta-G solvation = -20145.479132 eV Core-core repulsion = 16979.839049 eV Total energy + Delta-G solvation = -3165.640083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.13126 -40.89481 -38.74066 -36.51976 -35.57572 -34.76895 -32.15755 -31.57713 -30.20483 -28.49529 -27.37915 -24.87402 -23.43891 -23.07190 -22.23151 -21.07496 -19.65327 -18.83231 -17.84929 -17.39097 -17.26628 -16.97008 -15.96095 -15.86753 -15.67730 -15.21407 -14.99205 -14.51254 -14.17557 -14.14303 -13.78319 -13.52884 -12.98462 -12.90552 -12.86827 -12.50524 -12.35075 -12.33108 -12.11339 -11.92980 -11.51900 -11.15078 -10.74128 -10.42686 -9.59985 -9.32832 -9.24061 -8.71616 -6.41387 0.08570 0.56242 0.88473 1.01411 1.37159 1.47326 1.50426 1.53003 2.12249 2.21213 2.25484 2.76714 3.51145 3.67047 3.76638 3.99523 4.23927 4.31725 4.34602 4.54633 4.58950 4.63627 4.78748 4.86863 5.06411 5.22463 5.28973 5.33639 5.57711 5.67688 5.77964 5.98984 6.09463 6.29902 6.37419 6.69187 6.85179 6.92674 7.14661 7.31677 8.25583 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.006406 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.318819 B = 4369.802097 C = 5821.839769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.379 5.379 3 N -0.102 5.102 4 N -0.250 5.250 5 C -0.119 4.119 6 C 0.301 3.699 7 N -0.631 5.631 8 C 0.568 3.432 9 O -0.535 6.535 10 C -0.276 4.276 11 C -0.051 4.051 12 C -0.230 4.230 13 C -0.089 4.089 14 C -0.171 4.171 15 C 0.121 3.879 16 C -0.459 4.459 17 H 0.092 0.908 18 C 0.036 3.964 19 N -0.816 5.816 20 Si 0.972 3.028 21 H -0.255 1.255 22 H -0.266 1.266 23 H -0.270 1.270 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.188 0.812 28 H 0.425 0.575 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 3.998 2.111 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.174 5.174 3 N -0.081 5.081 4 N -0.118 5.118 5 C -0.281 4.281 6 C 0.071 3.929 7 N -0.283 5.283 8 C 0.364 3.636 9 O -0.411 6.411 10 C -0.281 4.281 11 C -0.070 4.070 12 C -0.249 4.249 13 C -0.108 4.108 14 C -0.191 4.191 15 C 0.117 3.883 16 C -0.487 4.487 17 H 0.110 0.890 18 C -0.180 4.180 19 N -0.442 5.442 20 Si 0.794 3.206 21 H -0.180 1.180 22 H -0.190 1.190 23 H -0.195 1.195 24 H 0.125 0.875 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.204 0.796 28 H 0.266 0.734 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.612 5.498 1.926 12.106 hybrid contribution 0.448 -1.315 -0.229 1.408 sum -10.164 4.184 1.698 11.122 Atomic orbital electron populations 1.22589 0.70243 1.07331 1.06304 1.50772 1.09667 1.02769 1.54241 1.81811 0.93777 1.05216 1.27311 1.74121 1.13861 1.12015 1.11794 1.23463 0.97848 0.90329 1.16416 1.18776 0.91192 0.82423 1.00528 1.42879 1.12068 0.99654 1.73660 1.18607 0.84467 0.85495 0.75064 1.90622 1.18372 1.82829 1.49327 1.19375 0.94842 0.89417 1.24486 1.21085 0.92979 0.97165 0.95728 1.20830 0.99268 0.92200 1.12558 1.21230 0.92923 0.99403 0.97238 1.21289 0.95643 0.95817 1.06321 1.17793 0.92953 0.91273 0.86275 1.20336 0.93751 1.11102 1.23516 0.89002 1.26755 1.05416 0.92626 0.93198 1.69716 1.39615 1.16950 1.17891 0.85328 0.76692 0.79590 0.78995 1.17971 1.19010 1.19461 0.87541 0.86482 0.86890 0.79563 0.73408 0.84317 0.84558 0.86172 0.88354 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 11.39 127.77 1.46 2.42 16 2 N -0.38 -10.23 4.09 -365.88 -1.50 -11.73 16 3 N -0.10 -3.46 13.81 37.02 0.51 -2.95 16 4 N -0.25 -9.70 12.32 -58.24 -0.72 -10.42 16 5 C -0.12 -4.71 10.76 83.92 0.90 -3.81 16 6 C 0.30 9.94 7.75 130.97 1.02 10.96 16 7 N -0.63 -19.49 5.37 -311.03 -1.67 -21.16 16 8 C 0.57 23.65 7.68 86.65 0.67 24.32 16 9 O -0.53 -26.31 10.69 -4.16 -0.04 -26.35 16 10 C -0.28 -11.88 5.92 -19.70 -0.12 -12.00 16 11 C -0.05 -1.72 9.52 22.50 0.21 -1.50 16 12 C -0.23 -7.67 10.03 22.40 0.22 -7.45 16 13 C -0.09 -3.46 10.01 22.26 0.22 -3.23 16 14 C -0.17 -8.09 8.62 22.72 0.20 -7.90 16 15 C 0.12 6.10 5.48 -21.10 -0.12 5.98 16 16 C -0.46 -24.57 7.78 23.41 0.18 -24.39 16 17 H 0.09 5.16 5.73 -2.91 -0.02 5.15 16 18 C 0.04 1.82 5.25 85.37 0.45 2.27 16 19 N -0.82 -41.25 11.25 21.88 0.25 -41.00 16 20 Si 0.97 39.86 29.57 68.60 2.03 41.89 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.11 0.89 7.65 -2.38 -0.02 0.87 16 27 H 0.19 8.21 5.83 -2.91 -0.02 8.19 16 28 H 0.43 9.20 6.21 -92.71 -0.58 8.62 16 29 H 0.14 3.16 6.42 -2.91 -0.02 3.14 16 30 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.10 4.92 6.72 -2.91 -0.02 4.90 16 33 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 Total: -1.00 -67.56 287.85 4.75 -62.80 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.60 Total: 23.24 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 5.30 Total: -14.33 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -3.12 Total: -87.25 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.04 Total: -26.35 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -67.56 4.75 -62.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472091012.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.066 kcal (2) G-P(sol) polarization free energy of solvation -67.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds