Wall clock time and date at job start Mon Mar 30 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47068 * 240.00244 * 3 2 1 5 5 H 1.48493 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47226 * 120.00590 * 3 2 1 7 7 C 1.37871 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00654 * 176.78228 * 7 2 1 9 9 C 1.50706 * 120.00061 * 356.78351 * 7 2 1 10 10 C 1.52999 * 112.99753 * 294.98739 * 9 7 2 11 11 O 1.45199 * 109.47042 * 286.22951 * 10 9 7 12 12 C 1.34237 * 117.00147 * 184.68511 * 11 10 9 13 13 O 1.20819 * 119.99786 * 354.94377 * 12 11 10 14 14 C 1.50698 * 120.00015 * 174.94109 * 12 11 10 15 15 C 1.53006 * 112.84982 * 54.16559 * 14 12 11 16 16 F 1.39902 * 109.46677 * 298.36058 * 15 14 12 17 17 C 1.53783 * 113.61652 * 282.85571 * 14 12 11 18 18 C 1.53783 * 87.07902 * 220.01987 * 17 14 12 19 19 C 1.53774 * 87.08098 * 25.43368 * 18 17 14 20 20 C 1.54037 * 113.92567 * 66.91795 * 9 7 2 21 21 O 1.44172 * 85.51714 * 91.66388 * 20 9 7 22 22 C 1.44175 * 93.34286 * 24.19181 * 21 20 9 23 23 H 0.97000 * 120.00286 * 5.00909 * 1 2 3 24 24 H 1.09002 * 109.47617 * 46.22724 * 10 9 7 25 25 H 1.08997 * 109.47252 * 166.22562 * 10 9 7 26 26 H 1.08994 * 109.47299 * 58.36270 * 15 14 12 27 27 H 1.08996 * 109.46979 * 178.36489 * 15 14 12 28 28 H 1.09003 * 113.60973 * 334.57007 * 17 14 12 29 29 H 1.09000 * 113.61245 * 105.46973 * 17 14 12 30 30 H 1.09001 * 113.61341 * 270.87938 * 18 17 14 31 31 H 1.08996 * 113.60911 * 139.98393 * 18 17 14 32 32 H 1.09009 * 113.61062 * 220.02067 * 19 18 17 33 33 H 1.08999 * 113.69327 * 89.12844 * 19 18 17 34 34 H 1.09001 * 113.85958 * 205.81392 * 20 9 7 35 35 H 1.09000 * 113.86445 * 337.51421 * 20 9 7 36 36 H 1.08997 * 113.86549 * 221.66330 * 22 21 20 37 37 H 1.09000 * 113.86757 * 89.95164 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0833 -1.1948 -0.0520 9 6 1.2529 -2.4981 0.0743 10 6 0.5020 -2.6813 1.3947 11 8 1.4500 -2.9793 2.4534 12 6 0.9429 -3.2648 3.6630 13 8 -0.2466 -3.1767 3.8555 14 6 1.8572 -3.6951 4.7809 15 6 2.9985 -2.7066 5.0290 16 9 3.7926 -2.6137 3.8809 17 6 2.3196 -5.1576 4.6702 18 6 2.1377 -5.2482 6.1945 19 6 1.1125 -4.1099 6.0608 20 6 0.4007 -2.7994 -1.1729 21 8 1.5669 -3.4906 -1.6636 22 6 2.0900 -3.7229 -0.3403 23 1 -0.4850 0.8368 -0.0733 24 1 -0.0366 -1.7650 1.6367 25 1 -0.2062 -3.5043 1.2988 26 1 2.5850 -1.7262 5.2652 27 1 3.6062 -3.0554 5.8638 28 1 1.6323 -5.7916 4.1100 29 1 3.3550 -5.2649 4.3468 30 1 3.0284 -4.9697 6.7578 31 1 1.7029 -6.1907 6.5271 32 1 1.1734 -3.3713 6.8602 33 1 0.0947 -4.4561 5.8810 34 1 -0.4499 -3.4527 -0.9784 35 1 0.1370 -1.9139 -1.7513 36 1 3.1660 -3.5698 -0.2583 37 1 1.7552 -4.6581 0.1084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519606236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:17 Heat of formation + Delta-G solvation = -129.894577 kcal Electronic energy + Delta-G solvation = -22228.389279 eV Core-core repulsion = 18694.417929 eV Total energy + Delta-G solvation = -3533.971350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.33873 -40.42684 -39.25354 -38.05908 -35.58021 -32.92549 -30.04415 -28.96219 -26.00256 -25.51753 -25.31455 -24.76303 -23.81103 -21.12880 -19.01921 -18.64525 -17.35788 -16.71489 -16.12581 -15.89931 -15.54251 -15.27113 -15.19415 -14.67421 -14.46076 -14.30540 -14.20841 -13.92373 -12.83399 -12.58713 -12.38313 -12.23491 -11.87540 -11.78557 -11.62724 -11.34008 -10.98143 -10.93831 -10.78098 -10.53032 -10.46120 -10.41292 -10.09059 -9.87801 -9.49940 -9.29627 -9.04188 -8.67369 -8.31849 -6.14691 -4.19471 2.66864 3.28156 3.30508 3.33397 3.37383 4.17725 4.31483 4.35568 4.40922 4.57861 4.87002 4.91930 5.06255 5.13236 5.19976 5.40369 5.53471 5.59447 5.70618 5.76972 5.89106 5.93347 6.06132 6.09888 6.18487 6.20095 6.33653 6.43768 6.62792 6.99893 7.18000 7.31753 7.34580 7.42378 7.81439 8.21574 8.42797 8.78980 9.44592 10.92545 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.006681 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.808613 B = 4190.050146 C = 4723.768077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.486 4.486 8 H 0.067 0.933 9 C 0.035 3.965 10 C 0.079 3.921 11 O -0.326 6.326 12 C 0.466 3.534 13 O -0.518 6.518 14 C -0.121 4.121 15 C 0.094 3.906 16 F -0.194 7.194 17 C -0.115 4.115 18 C -0.142 4.142 19 C -0.109 4.109 20 C 0.051 3.949 21 O -0.390 6.390 22 C 0.034 3.966 23 H 0.266 0.734 24 H 0.090 0.910 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 -8.017 11.943 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.524 4.524 8 H 0.085 0.915 9 C 0.034 3.966 10 C 0.005 3.995 11 O -0.240 6.240 12 C 0.308 3.692 13 O -0.408 6.408 14 C -0.123 4.123 15 C 0.039 3.961 16 F -0.175 7.175 17 C -0.153 4.153 18 C -0.179 4.179 19 C -0.147 4.147 20 C -0.026 4.026 21 O -0.309 6.309 22 C -0.043 4.043 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.343 -7.878 11.709 14.503 hybrid contribution 0.036 1.060 0.025 1.060 sum 3.379 -6.818 11.735 13.986 Atomic orbital electron populations 1.69854 1.05902 1.27614 1.49586 1.24978 0.94980 0.99360 0.94456 0.86527 0.79568 0.82380 0.78907 1.20011 1.21223 1.19987 1.20624 0.93152 0.88253 1.50321 0.91528 1.21073 0.92398 0.94639 0.88466 1.23603 0.90097 0.99956 0.85802 1.86561 1.41879 1.77340 1.18245 1.23030 0.87697 0.73979 0.84448 1.90602 1.17362 1.49308 1.83554 1.22583 0.96864 0.98117 0.94685 1.21578 0.89625 0.99258 0.85674 1.92884 1.74865 1.97384 1.52342 1.22870 1.02964 0.92397 0.97056 1.22894 0.99477 0.99384 0.96163 1.22865 0.99605 0.98056 0.94155 1.23907 0.87752 0.94597 0.96392 1.89483 1.37559 1.77898 1.25952 1.23952 0.99832 0.97299 0.83204 0.92449 0.89131 0.94634 0.90284 0.89814 0.89219 0.89712 0.89616 0.90509 0.90377 0.88144 0.93505 0.88528 0.90294 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.59 11.26 55.43 0.62 -23.96 16 2 C 0.06 1.74 5.17 -17.82 -0.09 1.65 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.49 -13.23 8.30 -34.44 -0.29 -13.52 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.03 0.87 0.57 -154.58 -0.09 0.78 16 10 C 0.08 1.90 4.80 37.16 0.18 2.08 16 11 O -0.33 -7.26 9.15 -39.28 -0.36 -7.61 16 12 C 0.47 9.07 6.97 36.00 0.25 9.32 16 13 O -0.52 -11.23 15.69 -18.74 -0.29 -11.53 16 14 C -0.12 -1.69 1.10 -154.85 -0.17 -1.86 16 15 C 0.09 1.21 6.75 37.16 0.25 1.47 16 16 F -0.19 -3.32 16.51 2.25 0.04 -3.28 16 17 C -0.12 -1.32 7.22 -25.92 -0.19 -1.51 16 18 C -0.14 -1.22 7.73 -25.92 -0.20 -1.42 16 19 C -0.11 -1.20 6.96 -25.92 -0.18 -1.38 16 20 C 0.05 1.22 7.93 37.61 0.30 1.52 16 21 O -0.39 -9.50 12.40 -35.23 -0.44 -9.94 16 22 C 0.03 0.77 8.12 37.61 0.31 1.07 16 23 H 0.27 7.05 8.32 -40.82 -0.34 6.71 16 24 H 0.09 2.45 6.76 -51.93 -0.35 2.10 16 25 H 0.04 0.81 7.85 -51.93 -0.41 0.40 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 0.75 7.30 -51.93 -0.38 0.37 16 28 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 29 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.09 0.59 7.60 -51.93 -0.39 0.20 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.72 8.10 -51.92 -0.42 0.30 16 33 H 0.10 1.23 7.51 -51.93 -0.39 0.84 16 34 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 35 H 0.10 2.48 7.54 -51.93 -0.39 2.09 16 36 H 0.08 1.73 8.08 -51.93 -0.42 1.31 16 37 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 312.88 15.07 4.72 4.72 Total: -1.00 -30.83 312.88 -5.88 -36.71 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.22 Total: 0.48 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 0.08 Total: -1.81 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.62 Total: -23.96 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.09 Total: -29.08 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.83 -5.88 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519606236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.186 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds