Wall clock time and date at job start Mon Mar 30 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47068 * 240.00244 * 3 2 1 5 5 H 1.48493 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47226 * 120.00590 * 3 2 1 7 7 C 1.37871 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00654 * 176.78228 * 7 2 1 9 9 C 1.50706 * 120.00061 * 356.78351 * 7 2 1 10 10 C 1.52999 * 112.99753 * 294.98739 * 9 7 2 11 11 O 1.45199 * 109.47042 * 286.22951 * 10 9 7 12 12 C 1.34237 * 117.00147 * 184.68511 * 11 10 9 13 13 O 1.20819 * 119.99786 * 354.94377 * 12 11 10 14 14 C 1.50698 * 120.00015 * 174.94109 * 12 11 10 15 15 C 1.53006 * 112.84982 * 54.16559 * 14 12 11 16 16 F 1.39902 * 109.46677 * 298.36058 * 15 14 12 17 17 C 1.53783 * 113.61652 * 282.85571 * 14 12 11 18 18 C 1.53783 * 87.07902 * 220.01987 * 17 14 12 19 19 C 1.53774 * 87.08098 * 25.43368 * 18 17 14 20 20 C 1.54037 * 113.92567 * 66.91795 * 9 7 2 21 21 O 1.44172 * 85.51714 * 91.66388 * 20 9 7 22 22 C 1.44175 * 93.34286 * 24.19181 * 21 20 9 23 23 H 0.97000 * 120.00286 * 5.00909 * 1 2 3 24 24 H 1.09002 * 109.47617 * 46.22724 * 10 9 7 25 25 H 1.08997 * 109.47252 * 166.22562 * 10 9 7 26 26 H 1.08994 * 109.47299 * 58.36270 * 15 14 12 27 27 H 1.08996 * 109.46979 * 178.36489 * 15 14 12 28 28 H 1.09003 * 113.60973 * 334.57007 * 17 14 12 29 29 H 1.09000 * 113.61245 * 105.46973 * 17 14 12 30 30 H 1.09001 * 113.61341 * 270.87938 * 18 17 14 31 31 H 1.08996 * 113.60911 * 139.98393 * 18 17 14 32 32 H 1.09009 * 113.61062 * 220.02067 * 19 18 17 33 33 H 1.08999 * 113.69327 * 89.12844 * 19 18 17 34 34 H 1.09001 * 113.85958 * 205.81392 * 20 9 7 35 35 H 1.09000 * 113.86445 * 337.51421 * 20 9 7 36 36 H 1.08997 * 113.86549 * 221.66330 * 22 21 20 37 37 H 1.09000 * 113.86757 * 89.95164 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0833 -1.1948 -0.0520 9 6 1.2529 -2.4981 0.0743 10 6 0.5020 -2.6813 1.3947 11 8 1.4500 -2.9793 2.4534 12 6 0.9429 -3.2648 3.6630 13 8 -0.2466 -3.1767 3.8555 14 6 1.8572 -3.6951 4.7809 15 6 2.9985 -2.7066 5.0290 16 9 3.7926 -2.6137 3.8809 17 6 2.3196 -5.1576 4.6702 18 6 2.1377 -5.2482 6.1945 19 6 1.1125 -4.1099 6.0608 20 6 0.4007 -2.7994 -1.1729 21 8 1.5669 -3.4906 -1.6636 22 6 2.0900 -3.7229 -0.3403 23 1 -0.4850 0.8368 -0.0733 24 1 -0.0366 -1.7650 1.6367 25 1 -0.2062 -3.5043 1.2988 26 1 2.5850 -1.7262 5.2652 27 1 3.6062 -3.0554 5.8638 28 1 1.6323 -5.7916 4.1100 29 1 3.3550 -5.2649 4.3468 30 1 3.0284 -4.9697 6.7578 31 1 1.7029 -6.1907 6.5271 32 1 1.1734 -3.3713 6.8602 33 1 0.0947 -4.4561 5.8810 34 1 -0.4499 -3.4527 -0.9784 35 1 0.1370 -1.9139 -1.7513 36 1 3.1660 -3.5698 -0.2583 37 1 1.7552 -4.6581 0.1084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519606236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:17 Heat of formation + Delta-G solvation = -148.467202 kcal Electronic energy + Delta-G solvation = -22229.194649 eV Core-core repulsion = 18694.417929 eV Total energy + Delta-G solvation = -3534.776719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.51654 -41.86247 -41.04093 -39.33351 -37.26600 -34.96449 -31.92471 -30.04906 -27.50486 -27.19155 -26.76699 -26.35009 -25.31042 -22.41239 -20.94526 -19.81492 -18.71684 -18.45596 -17.78265 -17.43186 -16.92360 -16.68059 -16.58111 -16.30320 -16.17483 -16.12051 -15.77002 -15.07153 -14.58264 -14.04643 -13.89752 -13.64137 -13.46011 -13.07237 -12.92450 -12.82656 -12.67482 -12.37563 -12.31167 -12.07763 -11.89965 -11.72025 -11.38132 -11.36696 -11.28565 -11.03116 -10.95109 -10.68217 -10.27261 -8.21273 -6.32227 1.15611 1.39570 1.40789 1.48315 1.81708 2.37755 2.95752 3.17399 3.18759 3.34184 3.43830 3.67800 3.78836 4.09892 4.14381 4.18801 4.27931 4.40067 4.42254 4.44439 4.56678 4.67714 4.72048 4.74163 4.83782 5.01354 5.06216 5.10411 5.13249 5.19412 5.41045 5.43629 5.49705 5.66878 5.69630 6.19738 6.67605 6.79982 7.34191 8.84699 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.006681 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.808613 B = 4190.050146 C = 4723.768077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.019 3.981 10 C 0.093 3.907 11 O -0.338 6.338 12 C 0.456 3.544 13 O -0.548 6.548 14 C -0.130 4.130 15 C 0.086 3.914 16 F -0.221 7.221 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.108 4.108 20 C 0.055 3.945 21 O -0.402 6.402 22 C 0.045 3.955 23 H 0.266 0.734 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.085 -8.937 13.881 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.018 3.982 10 C 0.019 3.981 11 O -0.253 6.253 12 C 0.301 3.699 13 O -0.439 6.439 14 C -0.132 4.132 15 C 0.032 3.968 16 F -0.202 7.202 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.145 4.145 20 C -0.022 4.022 21 O -0.321 6.321 22 C -0.032 4.032 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.153 0.847 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.694 -8.811 13.655 16.915 hybrid contribution -0.416 1.320 -0.541 1.486 sum 4.277 -7.491 13.114 15.697 Atomic orbital electron populations 1.69953 1.06889 1.28158 1.49977 1.25644 0.95742 1.02156 0.94174 0.85670 0.78542 0.78997 0.78919 1.19473 1.20635 1.19820 1.20843 0.92931 0.89789 1.50739 0.92505 1.21139 0.93171 0.94912 0.88978 1.23170 0.90153 0.98401 0.86417 1.86579 1.41633 1.77849 1.19200 1.24337 0.88467 0.72636 0.84468 1.90576 1.19035 1.50514 1.83815 1.23014 0.96896 0.99686 0.93580 1.21949 0.89671 0.99253 0.85962 1.92826 1.75610 1.97494 1.54248 1.22969 1.02944 0.90061 0.99641 1.22878 0.99565 0.99126 0.93798 1.22924 0.99164 0.99569 0.92890 1.23831 0.88391 0.94341 0.95619 1.89454 1.37761 1.77926 1.26989 1.24009 0.99799 0.97355 0.81997 0.92507 0.92773 0.94021 0.90526 0.84662 0.90245 0.89020 0.86693 0.88769 0.88287 0.89962 0.91353 0.90704 0.89924 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.38 11.26 21.44 0.24 -51.14 16 2 C 0.02 1.25 5.17 84.65 0.44 1.69 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.51 -27.99 8.30 25.60 0.21 -27.78 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.02 0.94 0.57 -52.23 -0.03 0.91 16 10 C 0.09 4.57 4.80 71.98 0.35 4.92 16 11 O -0.34 -15.25 9.15 -51.48 -0.47 -15.72 16 12 C 0.46 17.86 6.97 71.24 0.50 18.36 16 13 O -0.55 -24.26 15.69 21.99 0.34 -23.91 16 14 C -0.13 -3.42 1.10 -52.40 -0.06 -3.47 16 15 C 0.09 2.03 6.75 71.98 0.49 2.52 16 16 F -0.22 -7.31 16.51 44.97 0.74 -6.57 16 17 C -0.12 -2.42 7.22 31.12 0.22 -2.20 16 18 C -0.12 -1.51 7.73 31.12 0.24 -1.27 16 19 C -0.11 -2.09 6.96 31.12 0.22 -1.87 16 20 C 0.06 2.69 7.93 72.27 0.57 3.26 16 21 O -0.40 -19.45 12.40 -148.98 -1.85 -21.29 16 22 C 0.04 1.99 8.12 72.27 0.59 2.58 16 23 H 0.27 14.36 8.32 -92.71 -0.77 13.59 16 24 H 0.05 3.04 6.76 -2.39 -0.02 3.03 16 25 H 0.04 1.94 7.85 -2.39 -0.02 1.92 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.14 1.80 7.30 -2.39 -0.02 1.78 16 28 H 0.08 1.77 8.09 -2.39 -0.02 1.75 16 29 H 0.09 1.75 8.10 -2.39 -0.02 1.73 16 30 H 0.11 0.89 7.60 -2.39 -0.02 0.87 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.49 8.10 -2.38 -0.02 1.47 16 33 H 0.08 1.91 7.51 -2.39 -0.02 1.90 16 34 H 0.07 2.99 7.93 -2.39 -0.02 2.97 16 35 H 0.07 3.94 7.54 -2.39 -0.02 3.92 16 36 H 0.08 3.57 8.08 -2.39 -0.02 3.55 16 37 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 Total: -1.00 -68.47 312.88 5.84 -62.63 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.07 Total: 12.40 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 3.73 Total: -2.36 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.24 Total: -51.14 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -1.97 Total: -60.92 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 0.74 Total: -6.57 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.47 5.84 -62.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519606236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.836 kcal (2) G-P(sol) polarization free energy of solvation -68.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds