Wall clock time and date at job start Mon Mar 30 2020 01:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 11 11 O 1.45199 * 109.47096 * 179.97438 * 9 7 2 12 12 C 1.34229 * 117.00326 * 149.99822 * 11 9 7 13 13 O 1.20834 * 119.99777 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00304 * 180.02562 * 12 11 9 15 15 F 1.39891 * 109.54632 * 59.81890 * 14 12 11 16 16 C 1.53181 * 109.53835 * 299.55092 * 14 12 11 17 17 C 1.53096 * 109.16015 * 183.15142 * 16 14 12 18 18 O 1.42911 * 109.41225 * 57.61331 * 17 16 14 19 19 C 1.42893 * 114.09728 * 298.83832 * 18 17 16 20 20 C 1.53093 * 109.41505 * 61.15782 * 19 18 17 21 21 C 1.52999 * 109.47500 * 59.99754 * 9 7 2 22 22 C 1.53007 * 117.49730 * 248.62427 * 21 9 7 23 23 C 1.52994 * 117.49913 * 180.02562 * 21 9 7 24 24 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.52425 * 303.05645 * 16 14 12 26 26 H 1.08999 * 109.52319 * 63.25270 * 16 14 12 27 27 H 1.08991 * 109.48226 * 297.62899 * 17 16 14 28 28 H 1.08999 * 109.48776 * 177.59937 * 17 16 14 29 29 H 1.09007 * 109.48495 * 301.18041 * 19 18 17 30 30 H 1.09001 * 109.48944 * 181.14825 * 19 18 17 31 31 H 1.09007 * 109.52412 * 182.47958 * 20 19 18 32 32 H 1.09000 * 109.51957 * 62.30019 * 20 19 18 33 33 H 1.08993 * 115.54776 * 34.32905 * 21 9 7 34 34 H 1.08997 * 117.49948 * 359.97438 * 22 21 9 35 35 H 1.08994 * 117.49955 * 145.01811 * 22 21 9 36 36 H 1.09005 * 117.50172 * 214.97255 * 23 21 9 37 37 H 1.09000 * 117.50350 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 2.1946 -3.6027 0.0005 12 6 1.8034 -4.7390 0.5985 13 8 0.7089 -4.8089 1.1057 14 6 2.7297 -5.9271 0.6385 15 9 3.9082 -5.5794 1.3071 16 6 3.0600 -6.3674 -0.7910 17 6 3.9369 -7.6213 -0.7405 18 8 3.2554 -8.6488 -0.0178 19 6 2.9624 -8.3113 1.3394 20 6 2.0465 -7.0850 1.3726 21 6 0.3718 -2.5805 -1.2490 22 6 -1.1441 -2.5157 -1.0515 23 6 -0.4785 -3.8388 -1.4337 24 1 -0.4850 -0.8401 -0.0004 25 1 2.1369 -6.5898 -1.3262 26 1 3.5960 -5.5686 -1.3035 27 1 4.8769 -7.3877 -0.2408 28 1 4.1400 -7.9641 -1.7551 29 1 3.8898 -8.0866 1.8665 30 1 2.4635 -9.1509 1.8234 31 1 1.8575 -6.7993 2.4074 32 1 1.1029 -7.3218 0.8810 33 1 0.7834 -2.1150 -2.1444 34 1 -1.5149 -2.4156 -0.0315 35 1 -1.7300 -2.0075 -1.8172 36 1 -0.6267 -4.2014 -2.4509 37 1 -0.4114 -4.6090 -0.6653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520418558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:24 Heat of formation + Delta-G solvation = -160.449843 kcal Electronic energy + Delta-G solvation = -22302.014441 eV Core-core repulsion = 18766.718115 eV Total energy + Delta-G solvation = -3535.296326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.96269 -40.11019 -38.88003 -36.97803 -35.34306 -33.27377 -32.77878 -31.43395 -27.90019 -26.05250 -23.96165 -23.29814 -21.89535 -21.58370 -20.08857 -19.56364 -17.87818 -17.28218 -16.77976 -16.38859 -16.15205 -15.47836 -15.37036 -15.14714 -14.46835 -14.25473 -13.84839 -13.60294 -13.01151 -12.71982 -12.68367 -12.63543 -12.44639 -12.20862 -11.63802 -11.58491 -10.98746 -10.87815 -10.80899 -10.78486 -10.69294 -10.19367 -10.11245 -9.76526 -9.68268 -9.63996 -9.32985 -8.67159 -8.46376 -6.49180 -4.29228 2.47191 3.02521 3.37420 3.41146 3.57711 3.65432 4.14805 4.18337 4.39746 4.56417 4.60334 4.66440 4.97898 5.00188 5.17127 5.21443 5.39416 5.41363 5.45880 5.49983 5.61422 5.77943 5.79222 5.83404 5.90159 6.01272 6.21770 6.25885 6.56367 6.78580 6.84609 6.92954 6.99482 7.30839 7.82365 8.12850 8.46077 8.70719 9.43672 10.88561 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.005546 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.453168 B = 5047.623139 C = 5533.571053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.609 4.609 8 H 0.065 0.935 9 C 0.238 3.762 10 H 0.038 0.962 11 O -0.331 6.331 12 C 0.441 3.559 13 O -0.500 6.500 14 C 0.136 3.864 15 F -0.185 7.185 16 C -0.175 4.175 17 C 0.063 3.937 18 O -0.381 6.381 19 C 0.062 3.938 20 C -0.164 4.164 21 C -0.142 4.142 22 C -0.154 4.154 23 C -0.212 4.212 24 H 0.284 0.716 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 -13.904 -0.974 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.176 4.176 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.647 4.647 8 H 0.083 0.917 9 C 0.186 3.814 10 H 0.056 0.944 11 O -0.245 6.245 12 C 0.282 3.718 13 O -0.390 6.390 14 C 0.116 3.884 15 F -0.165 7.165 16 C -0.213 4.213 17 C -0.014 4.014 18 O -0.299 6.299 19 C -0.015 4.015 20 C -0.202 4.202 21 C -0.161 4.161 22 C -0.191 4.191 23 C -0.249 4.249 24 H 0.098 0.902 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.433 -12.385 -0.897 13.185 hybrid contribution 0.063 -1.156 0.118 1.163 sum 4.496 -13.541 -0.779 14.289 Atomic orbital electron populations 1.70730 1.06839 1.32667 1.43918 1.25848 0.96445 1.02211 0.93122 0.83401 0.74629 0.74345 0.76984 1.21165 1.20752 1.21214 1.21831 0.95295 0.89206 1.58365 0.91676 1.20401 0.86700 0.81701 0.92623 0.94410 1.86551 1.48557 1.21331 1.68094 1.23529 0.86804 0.85420 0.76065 1.90598 1.22327 1.82927 1.43115 1.20777 0.81391 0.91724 0.94496 1.92915 1.48381 1.93322 1.81889 1.22809 1.03750 1.00561 0.94163 1.22603 0.94144 0.86816 0.97835 1.87935 1.77977 1.40280 1.23753 1.22618 0.98299 0.96857 0.83712 1.22664 1.00706 0.93732 1.03058 1.23109 0.92331 0.98998 1.01654 1.22681 0.95473 0.98980 1.01989 1.23224 1.07619 0.92569 1.01452 0.90183 0.88610 0.87863 0.92098 0.87709 0.92250 0.87754 0.88694 0.88172 0.88220 0.89133 0.89425 0.90186 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.38 13.38 55.43 0.74 -25.64 16 2 C 0.03 0.85 5.30 -17.82 -0.09 0.75 16 3 Si 1.08 24.65 29.90 -169.99 -5.08 19.56 16 4 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.61 -17.26 8.88 -34.44 -0.31 -17.56 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.24 6.25 2.01 -27.89 -0.06 6.19 16 10 H 0.04 1.09 6.78 -51.92 -0.35 0.74 16 11 O -0.33 -7.82 9.78 -39.26 -0.38 -8.21 16 12 C 0.44 9.05 6.20 36.01 0.22 9.27 16 13 O -0.50 -11.03 13.02 -18.76 -0.24 -11.27 16 14 C 0.14 2.15 1.18 -91.59 -0.11 2.04 16 15 F -0.18 -3.09 16.07 2.25 0.04 -3.05 16 16 C -0.17 -2.29 5.14 -26.59 -0.14 -2.43 16 17 C 0.06 0.68 6.72 37.21 0.25 0.93 16 18 O -0.38 -4.52 10.77 -35.23 -0.38 -4.90 16 19 C 0.06 0.66 6.72 37.21 0.25 0.91 16 20 C -0.16 -2.14 4.52 -26.59 -0.12 -2.26 16 21 C -0.14 -3.37 4.47 -90.62 -0.41 -3.78 16 22 C -0.15 -3.37 8.14 -26.75 -0.22 -3.59 16 23 C -0.21 -4.29 9.79 -26.76 -0.26 -4.55 16 24 H 0.28 8.03 3.57 -40.82 -0.15 7.89 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 27 H 0.06 0.63 7.93 -51.93 -0.41 0.22 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.61 7.93 -51.92 -0.41 0.20 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.10 1.31 8.02 -51.93 -0.42 0.89 16 33 H 0.10 2.44 8.11 -51.93 -0.42 2.02 16 34 H 0.09 2.08 7.43 -51.93 -0.39 1.69 16 35 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.10 1.98 5.37 -51.93 -0.28 1.70 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -31.36 303.24 -6.71 -38.07 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.99 Total: 4.94 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -0.98 Total: -14.07 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.01 Total: -24.38 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.36 -6.71 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.379 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds