Wall clock time and date at job start Mon Mar 30 2020 01:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 11 11 O 1.45199 * 109.47096 * 179.97438 * 9 7 2 12 12 C 1.34229 * 117.00326 * 149.99822 * 11 9 7 13 13 O 1.20834 * 119.99777 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00304 * 180.02562 * 12 11 9 15 15 F 1.39891 * 109.54632 * 59.81890 * 14 12 11 16 16 C 1.53181 * 109.53835 * 299.55092 * 14 12 11 17 17 C 1.53096 * 109.16015 * 183.15142 * 16 14 12 18 18 O 1.42911 * 109.41225 * 57.61331 * 17 16 14 19 19 C 1.42893 * 114.09728 * 298.83832 * 18 17 16 20 20 C 1.53093 * 109.41505 * 61.15782 * 19 18 17 21 21 C 1.52999 * 109.47500 * 59.99754 * 9 7 2 22 22 C 1.53007 * 117.49730 * 248.62427 * 21 9 7 23 23 C 1.52994 * 117.49913 * 180.02562 * 21 9 7 24 24 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.52425 * 303.05645 * 16 14 12 26 26 H 1.08999 * 109.52319 * 63.25270 * 16 14 12 27 27 H 1.08991 * 109.48226 * 297.62899 * 17 16 14 28 28 H 1.08999 * 109.48776 * 177.59937 * 17 16 14 29 29 H 1.09007 * 109.48495 * 301.18041 * 19 18 17 30 30 H 1.09001 * 109.48944 * 181.14825 * 19 18 17 31 31 H 1.09007 * 109.52412 * 182.47958 * 20 19 18 32 32 H 1.09000 * 109.51957 * 62.30019 * 20 19 18 33 33 H 1.08993 * 115.54776 * 34.32905 * 21 9 7 34 34 H 1.08997 * 117.49948 * 359.97438 * 22 21 9 35 35 H 1.08994 * 117.49955 * 145.01811 * 22 21 9 36 36 H 1.09005 * 117.50172 * 214.97255 * 23 21 9 37 37 H 1.09000 * 117.50350 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 2.1946 -3.6027 0.0005 12 6 1.8034 -4.7390 0.5985 13 8 0.7089 -4.8089 1.1057 14 6 2.7297 -5.9271 0.6385 15 9 3.9082 -5.5794 1.3071 16 6 3.0600 -6.3674 -0.7910 17 6 3.9369 -7.6213 -0.7405 18 8 3.2554 -8.6488 -0.0178 19 6 2.9624 -8.3113 1.3394 20 6 2.0465 -7.0850 1.3726 21 6 0.3718 -2.5805 -1.2490 22 6 -1.1441 -2.5157 -1.0515 23 6 -0.4785 -3.8388 -1.4337 24 1 -0.4850 -0.8401 -0.0004 25 1 2.1369 -6.5898 -1.3262 26 1 3.5960 -5.5686 -1.3035 27 1 4.8769 -7.3877 -0.2408 28 1 4.1400 -7.9641 -1.7551 29 1 3.8898 -8.0866 1.8665 30 1 2.4635 -9.1509 1.8234 31 1 1.8575 -6.7993 2.4074 32 1 1.1029 -7.3218 0.8810 33 1 0.7834 -2.1150 -2.1444 34 1 -1.5149 -2.4156 -0.0315 35 1 -1.7300 -2.0075 -1.8172 36 1 -0.6267 -4.2014 -2.4509 37 1 -0.4114 -4.6090 -0.6653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520418558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:24 Heat of formation + Delta-G solvation = -178.763828 kcal Electronic energy + Delta-G solvation = -22302.808595 eV Core-core repulsion = 18766.718115 eV Total energy + Delta-G solvation = -3536.090480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.28743 -41.80203 -39.91728 -38.74808 -37.14466 -34.88154 -34.40090 -32.37623 -29.83000 -27.38356 -25.35757 -24.88385 -23.55193 -23.07885 -21.63126 -21.15744 -19.56717 -19.16011 -18.15399 -17.93264 -17.08020 -16.90146 -16.74216 -16.22676 -16.05092 -15.67805 -15.54660 -15.25898 -14.77068 -14.51737 -13.97792 -13.73674 -13.69219 -13.54698 -13.45808 -12.91571 -12.66006 -12.57434 -12.51265 -12.01741 -11.95080 -11.80564 -11.65436 -11.52213 -11.40301 -11.16026 -10.76364 -10.70187 -10.51285 -8.71650 -6.54219 0.82539 1.44029 1.53751 1.60851 1.80392 2.50611 2.77494 2.83371 3.00362 3.04440 3.04846 3.38513 3.51280 3.72129 3.82141 3.96631 4.06160 4.09700 4.13134 4.26494 4.41728 4.48664 4.52853 4.56752 4.68864 4.76943 4.82394 4.86911 4.91875 4.97671 5.09240 5.14715 5.36430 5.77867 6.02434 6.07595 6.42335 6.62695 7.27907 8.68093 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.005546 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.453168 B = 5047.623139 C = 5533.571053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.011 4.011 3 Si 1.124 2.876 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.634 4.634 8 H 0.055 0.945 9 C 0.241 3.759 10 H 0.001 0.999 11 O -0.344 6.344 12 C 0.433 3.567 13 O -0.520 6.520 14 C 0.136 3.864 15 F -0.190 7.190 16 C -0.173 4.173 17 C 0.066 3.934 18 O -0.387 6.387 19 C 0.066 3.934 20 C -0.160 4.160 21 C -0.163 4.163 22 C -0.154 4.154 23 C -0.177 4.177 24 H 0.280 0.720 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.133 0.867 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 -15.250 -1.889 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.944 3.056 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.671 4.671 8 H 0.073 0.927 9 C 0.188 3.812 10 H 0.018 0.982 11 O -0.260 6.260 12 C 0.275 3.725 13 O -0.409 6.409 14 C 0.117 3.883 15 F -0.171 7.171 16 C -0.210 4.210 17 C -0.010 4.010 18 O -0.306 6.306 19 C -0.011 4.011 20 C -0.198 4.198 21 C -0.182 4.182 22 C -0.191 4.191 23 C -0.214 4.214 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.132 -13.771 -1.812 14.808 hybrid contribution -0.171 -0.791 0.466 0.934 sum 4.961 -14.562 -1.346 15.443 Atomic orbital electron populations 1.70806 1.07619 1.32694 1.45183 1.27299 0.96595 1.05554 0.91822 0.82853 0.73939 0.70622 0.78157 1.19171 1.20371 1.19936 1.22137 0.95072 0.90889 1.58969 0.92683 1.20059 0.86713 0.82184 0.92245 0.98168 1.86536 1.48329 1.22038 1.69060 1.24622 0.87579 0.85499 0.74826 1.90575 1.23606 1.83169 1.43594 1.21060 0.80412 0.89914 0.96911 1.92902 1.48598 1.93380 1.82216 1.22877 1.04541 1.01689 0.91943 1.22723 0.93409 0.85444 0.99427 1.87939 1.78008 1.40440 1.24180 1.22744 0.98228 0.96446 0.83652 1.22735 1.01113 0.93585 1.02398 1.22808 0.92925 1.02348 1.00099 1.22670 0.94287 1.00561 1.01585 1.23248 1.03903 0.91085 1.03155 0.90638 0.88130 0.88382 0.91598 0.84967 0.91620 0.84981 0.89021 0.88191 0.89192 0.90998 0.87689 0.86586 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 13.38 21.45 0.29 -54.65 16 2 C -0.01 -0.63 5.30 84.65 0.45 -0.19 16 3 Si 1.12 49.55 29.90 68.60 2.05 51.60 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.63 -36.93 8.88 25.60 0.23 -36.70 16 8 H 0.05 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.24 13.10 2.01 29.85 0.06 13.16 16 10 H 0.00 0.04 6.78 -2.38 -0.02 0.03 16 11 O -0.34 -16.77 9.78 -51.41 -0.50 -17.27 16 12 C 0.43 18.02 6.20 71.24 0.44 18.46 16 13 O -0.52 -23.44 13.02 21.94 0.29 -23.15 16 14 C 0.14 4.22 1.18 -11.42 -0.01 4.21 16 15 F -0.19 -6.27 16.07 44.97 0.72 -5.55 16 16 C -0.17 -4.26 5.14 30.69 0.16 -4.10 16 17 C 0.07 1.25 6.72 72.01 0.48 1.73 16 18 O -0.39 -7.98 10.77 -148.98 -1.60 -9.58 16 19 C 0.07 1.22 6.72 72.01 0.48 1.71 16 20 C -0.16 -3.97 4.52 30.68 0.14 -3.83 16 21 C -0.16 -7.84 4.47 -10.79 -0.05 -7.89 16 22 C -0.15 -6.75 8.14 30.58 0.25 -6.50 16 23 C -0.18 -7.00 9.79 30.58 0.30 -6.70 16 24 H 0.28 16.31 3.57 -92.71 -0.33 15.98 16 25 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.07 1.19 7.93 -2.39 -0.02 1.18 16 28 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.17 7.93 -2.38 -0.02 1.15 16 30 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.10 2.48 8.02 -2.39 -0.02 2.46 16 33 H 0.09 4.47 8.11 -2.39 -0.02 4.45 16 34 H 0.07 3.41 7.43 -2.39 -0.02 3.39 16 35 H 0.10 4.19 8.14 -2.39 -0.02 4.17 16 36 H 0.12 3.76 8.14 -2.38 -0.02 3.74 16 37 H 0.09 3.67 5.37 -2.39 -0.01 3.66 16 Total: -1.00 -69.13 303.24 5.68 -63.45 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 1.51 Total: 21.78 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 2.93 Total: -26.63 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.29 Total: -54.65 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -1.82 Total: -50.00 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.72 Total: -5.55 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.60 kcal Total: -69.13 5.68 -63.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.313 kcal (2) G-P(sol) polarization free energy of solvation -69.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds