Wall clock time and date at job start Mon Mar 30 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00067 * 2 1 4 4 H 1.48502 * 109.47469 * 270.00006 * 3 2 1 5 5 H 1.48496 * 109.47610 * 30.00518 * 3 2 1 6 6 H 1.48507 * 109.47229 * 150.00445 * 3 2 1 7 7 C 1.37887 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99758 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99671 * 179.97438 * 7 2 1 10 10 H 1.08993 * 109.47353 * 59.99412 * 9 7 2 11 11 O 1.45201 * 109.46907 * 179.97438 * 9 7 2 12 12 C 1.34222 * 117.00137 * 209.99697 * 11 9 7 13 13 O 1.20833 * 119.99852 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00432 * 179.71953 * 12 11 9 15 15 F 1.39904 * 109.53860 * 60.09749 * 14 12 11 16 16 C 1.53180 * 109.54643 * 299.83884 * 14 12 11 17 17 C 1.53085 * 109.16461 * 183.15138 * 16 14 12 18 18 O 1.42902 * 109.41828 * 57.60317 * 17 16 14 19 19 C 1.42905 * 114.09615 * 298.84107 * 18 17 16 20 20 C 1.53095 * 109.41102 * 61.16067 * 19 18 17 21 21 C 1.52996 * 109.46771 * 299.99295 * 9 7 2 22 22 C 1.52994 * 117.50252 * 248.62325 * 21 9 7 23 23 C 1.52994 * 60.00488 * 252.51390 * 22 21 9 24 24 H 0.96998 * 119.99726 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.52011 * 303.05186 * 16 14 12 26 26 H 1.09002 * 109.52155 * 63.23807 * 16 14 12 27 27 H 1.09005 * 109.47869 * 297.61781 * 17 16 14 28 28 H 1.08998 * 109.49306 * 177.59262 * 17 16 14 29 29 H 1.08995 * 109.48499 * 301.17696 * 19 18 17 30 30 H 1.09001 * 109.48949 * 181.14465 * 19 18 17 31 31 H 1.09000 * 109.51620 * 182.48169 * 20 19 18 32 32 H 1.09003 * 109.52619 * 62.29642 * 20 19 18 33 33 H 1.09003 * 115.55452 * 34.33763 * 21 9 7 34 34 H 1.09002 * 117.49740 * 0.02562 * 22 21 9 35 35 H 1.09002 * 117.50277 * 145.02544 * 22 21 9 36 36 H 1.09003 * 117.49955 * 252.51173 * 23 22 21 37 37 H 1.09003 * 117.49888 * 107.48489 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8752 -0.6804 0.8887 11 8 3.9955 -2.5631 -0.0010 12 6 5.1754 -2.7923 0.5965 13 8 5.7835 -1.8792 1.1031 14 6 5.7385 -4.1894 0.6416 15 9 5.9259 -4.6606 -0.6623 16 6 4.7665 -5.1098 1.3862 17 6 5.3819 -6.5073 1.4957 18 8 6.6416 -6.4206 2.1649 19 6 7.6064 -5.6110 1.4897 20 6 7.0804 -4.1774 1.3800 21 6 4.0210 -0.4727 -1.2505 22 6 4.7224 -1.3164 -2.3168 23 6 5.5359 -0.3659 -1.4362 24 1 -0.4850 0.8401 0.0004 25 1 4.5824 -4.7137 2.3849 26 1 3.8266 -5.1676 0.8373 27 1 5.5282 -6.9193 0.4972 28 1 4.7134 -7.1557 2.0621 29 1 7.7819 -6.0112 0.4911 30 1 8.5404 -5.6135 2.0516 31 1 7.7953 -3.5686 0.8266 32 1 6.9430 -3.7624 2.3785 33 1 3.4119 0.3646 -1.5911 34 1 4.8206 -2.3855 -2.1284 35 1 4.5748 -1.0343 -3.3593 36 1 5.9235 0.5416 -1.8993 37 1 6.1696 -0.8096 -0.6683 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520418561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:25 Heat of formation + Delta-G solvation = -169.494888 kcal Electronic energy + Delta-G solvation = -22425.455163 eV Core-core repulsion = 18889.766615 eV Total energy + Delta-G solvation = -3535.688548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.24065 -41.86841 -39.91424 -38.61445 -36.86426 -34.96364 -34.36947 -32.34774 -30.89106 -27.53779 -25.06458 -24.79526 -23.49552 -23.16194 -21.66810 -21.05004 -19.47946 -18.72137 -18.32113 -17.98097 -17.25215 -17.08567 -16.93511 -16.47090 -16.16272 -15.66919 -15.48259 -15.08279 -14.76601 -14.49082 -13.84468 -13.71648 -13.67247 -13.58711 -13.54525 -13.31338 -12.76415 -12.54657 -12.50888 -12.21175 -12.03094 -11.89911 -11.74564 -11.57233 -11.40473 -11.10455 -10.84680 -10.73817 -10.68212 -8.47938 -6.56873 0.84113 1.20191 1.27918 1.39337 1.48076 2.17073 2.76154 2.83232 2.91118 3.01636 3.07574 3.35551 3.51009 3.74851 3.80314 3.93575 4.02153 4.12294 4.16660 4.34267 4.44696 4.52210 4.54541 4.64488 4.71654 4.72267 4.85385 4.89799 4.92344 5.00573 5.02764 5.15022 5.26793 5.45089 6.02837 6.10635 6.45732 6.60169 7.07020 8.67480 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.005934 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.387955 B = 4717.574951 C = 5093.654276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.035 3.965 3 Si 0.934 3.066 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.231 3.769 10 H 0.035 0.965 11 O -0.339 6.339 12 C 0.434 3.566 13 O -0.512 6.512 14 C 0.139 3.861 15 F -0.186 7.186 16 C -0.178 4.178 17 C 0.068 3.932 18 O -0.389 6.389 19 C 0.064 3.936 20 C -0.160 4.160 21 C -0.200 4.200 22 C -0.156 4.156 23 C -0.186 4.186 24 H 0.276 0.724 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.410 -9.646 0.663 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.165 4.165 3 Si 0.758 3.242 4 H -0.179 1.179 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.177 3.823 10 H 0.052 0.948 11 O -0.254 6.254 12 C 0.276 3.724 13 O -0.401 6.401 14 C 0.119 3.881 15 F -0.166 7.166 16 C -0.216 4.216 17 C -0.009 4.009 18 O -0.308 6.308 19 C -0.012 4.012 20 C -0.198 4.198 21 C -0.218 4.218 22 C -0.193 4.193 23 C -0.223 4.223 24 H 0.085 0.915 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.149 0.851 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.418 -9.350 0.936 18.056 hybrid contribution -0.558 1.356 -0.395 1.518 sum 14.860 -7.994 0.541 16.883 Atomic orbital electron populations 1.69948 1.07686 1.28845 1.49944 1.25490 0.95513 1.02151 0.93342 0.86067 0.79404 0.79036 0.79688 1.17859 1.20720 1.17757 1.20839 0.88714 0.94536 1.53173 0.93294 1.20136 0.92989 0.75548 0.93618 0.94751 1.86545 1.34930 1.34976 1.68955 1.24545 0.80183 0.92585 0.75078 1.90585 1.59997 1.46111 1.43438 1.20983 0.99255 0.87209 0.80644 1.92911 1.96394 1.88891 1.38404 1.22895 0.99106 0.97456 1.02131 1.22690 0.85247 0.93627 0.99332 1.87943 1.23077 1.69550 1.50236 1.22772 0.92675 0.86528 0.99258 1.22737 0.93194 1.01579 1.02279 1.23206 0.95112 1.03159 1.00347 1.22878 1.02566 0.97361 0.96452 1.23283 0.93039 1.02651 1.03280 0.91484 0.88641 0.88578 0.91316 0.85431 0.91382 0.85063 0.88284 0.88455 0.88047 0.89280 0.86853 0.86881 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.96 21.45 0.30 -55.90 16 2 C 0.04 2.03 5.44 84.66 0.46 2.49 16 3 Si 0.93 43.92 24.48 68.60 1.68 45.59 16 4 H -0.25 -11.07 6.72 99.48 0.67 -10.40 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.25 -11.71 6.53 99.48 0.65 -11.07 16 7 C -0.54 -31.19 9.48 25.60 0.24 -30.95 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 9 C 0.23 11.60 2.00 29.85 0.06 11.66 16 10 H 0.03 1.84 6.21 -2.39 -0.01 1.82 16 11 O -0.34 -15.37 8.32 -51.34 -0.43 -15.80 16 12 C 0.43 16.72 5.93 71.23 0.42 17.14 16 13 O -0.51 -21.11 13.02 21.94 0.29 -20.82 16 14 C 0.14 4.02 1.18 -11.42 -0.01 4.01 16 15 F -0.19 -5.46 16.07 44.97 0.72 -4.74 16 16 C -0.18 -4.50 5.14 30.68 0.16 -4.34 16 17 C 0.07 1.30 6.72 72.01 0.48 1.78 16 18 O -0.39 -8.05 10.77 -148.98 -1.60 -9.65 16 19 C 0.06 1.12 6.72 72.01 0.48 1.61 16 20 C -0.16 -3.66 4.52 30.68 0.14 -3.52 16 21 C -0.20 -8.90 4.45 -10.79 -0.05 -8.95 16 22 C -0.16 -5.81 9.79 30.59 0.30 -5.51 16 23 C -0.19 -6.87 9.85 30.59 0.30 -6.57 16 24 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.07 1.23 7.93 -2.38 -0.02 1.21 16 28 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.10 7.93 -2.39 -0.02 1.08 16 30 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.10 2.31 8.02 -2.39 -0.02 2.29 16 33 H 0.10 4.66 4.40 -2.39 -0.01 4.65 16 34 H 0.09 3.41 6.90 -2.39 -0.02 3.40 16 35 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 36 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.09 3.54 5.37 -2.39 -0.01 3.53 16 Total: -1.00 -67.48 298.31 4.93 -62.55 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.98 Total: 19.92 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 2.99 Total: -21.15 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.30 Total: -55.90 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -1.75 Total: -46.27 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.72 Total: -4.74 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.68 Total: 45.59 kcal Total: -67.48 4.93 -62.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.943 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds