Wall clock time and date at job start Mon Mar 30 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48490 * 109.47370 * 355.02212 * 3 2 1 5 5 H 1.48496 * 109.47210 * 115.02839 * 3 2 1 6 6 H 1.48507 * 109.46770 * 235.02384 * 3 2 1 7 7 C 1.37877 * 119.99681 * 180.27084 * 2 1 3 8 8 H 1.08004 * 119.99920 * 195.27068 * 7 2 1 9 9 C 1.50696 * 120.00329 * 15.26633 * 7 2 1 10 10 C 1.53002 * 112.99864 * 54.01482 * 9 7 2 11 11 O 1.45199 * 109.46695 * 63.54047 * 10 9 7 12 12 C 1.34231 * 116.99755 * 182.81402 * 11 10 9 13 13 O 1.20819 * 120.00186 * 5.37381 * 12 11 10 14 14 C 1.50703 * 119.99878 * 185.37222 * 12 11 10 15 15 C 1.52996 * 115.55581 * 296.24972 * 14 12 11 16 16 C 1.53003 * 109.46839 * 296.14907 * 15 14 12 17 17 F 1.39903 * 109.47215 * 180.26520 * 16 15 14 18 18 C 1.53004 * 117.49835 * 150.57546 * 14 12 11 19 19 C 1.53002 * 117.49805 * 81.91806 * 14 12 11 20 20 C 1.54045 * 113.81655 * 282.03242 * 9 7 2 21 21 O 1.44179 * 85.51418 * 223.19184 * 20 9 7 22 22 C 1.44178 * 93.34217 * 24.19512 * 21 20 9 23 23 H 0.96996 * 120.00337 * 185.97478 * 1 2 3 24 24 H 1.08998 * 109.46889 * 183.53270 * 10 9 7 25 25 H 1.08996 * 109.47253 * 303.53819 * 10 9 7 26 26 H 1.09004 * 109.47042 * 56.14097 * 15 14 12 27 27 H 1.08991 * 109.47625 * 176.14669 * 15 14 12 28 28 H 1.08994 * 109.47506 * 300.26728 * 16 15 14 29 29 H 1.09004 * 109.47071 * 60.27250 * 16 15 14 30 30 H 1.09001 * 117.49527 * 359.97438 * 18 14 12 31 31 H 1.08995 * 117.49824 * 145.02244 * 18 14 12 32 32 H 1.08998 * 117.50075 * 214.98213 * 19 14 12 33 33 H 1.09006 * 117.49896 * 359.97438 * 19 14 12 34 34 H 1.08996 * 113.86137 * 337.33971 * 20 9 7 35 35 H 1.09003 * 113.86121 * 109.04512 * 20 9 7 36 36 H 1.08996 * 113.85872 * 221.65690 * 22 21 20 37 37 H 1.09001 * 113.86575 * 89.94984 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2888 2.7438 -0.1215 5 1 3.0096 1.7503 1.2686 6 1 3.1917 1.6451 -1.1473 7 6 2.0045 -1.1941 -0.0056 8 1 3.0559 -1.2118 0.2406 9 6 1.2909 -2.4745 -0.3553 10 6 0.5636 -2.4056 -1.6997 11 8 1.5323 -2.2163 -2.7647 12 6 1.0498 -2.0766 -4.0095 13 8 -0.1430 -2.0140 -4.1916 14 6 1.9959 -1.9979 -5.1799 15 6 2.9311 -0.7872 -5.1923 16 6 2.1048 0.4942 -5.3189 17 9 2.9603 1.6011 -5.3363 18 6 1.4954 -2.5178 -6.5290 19 6 2.5375 -3.3146 -5.7402 20 6 0.4321 -3.0411 0.7912 21 8 0.9822 -4.3208 0.4193 22 6 2.1562 -3.7367 -0.1801 23 1 -0.4850 -0.8354 0.0874 24 1 0.0182 -3.3346 -1.8657 25 1 -0.1359 -1.5698 -1.6920 26 1 3.5032 -0.7604 -4.2648 27 1 3.6140 -0.8642 -6.0382 28 1 1.5290 0.4655 -6.2439 29 1 1.4253 0.5737 -4.4703 30 1 0.4820 -2.9171 -6.5699 31 1 1.8327 -1.9974 -7.4254 32 1 3.5599 -3.3182 -6.1179 33 1 2.2098 -4.2378 -5.2620 34 1 0.7373 -2.7005 1.7805 35 1 -0.6413 -2.9563 0.6215 36 1 2.4501 -4.2038 -1.1200 37 1 2.9878 -3.6086 0.5128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526119013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:22 Heat of formation + Delta-G solvation = -132.783885 kcal Electronic energy + Delta-G solvation = -22065.380643 eV Core-core repulsion = 18531.284003 eV Total energy + Delta-G solvation = -3534.096640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.45305 -40.37478 -39.47711 -37.42508 -35.68931 -33.38229 -31.24989 -29.61699 -26.18198 -25.67170 -24.40674 -23.89656 -22.90913 -22.41952 -19.35365 -18.89513 -17.42171 -17.08961 -16.40655 -16.23268 -15.74670 -15.33966 -15.15789 -14.79923 -14.69811 -14.32752 -14.20952 -13.76344 -13.28082 -12.71840 -12.62901 -12.21972 -11.85337 -11.72641 -11.63108 -11.52906 -11.16795 -10.91009 -10.78522 -10.58885 -10.51501 -10.16914 -10.12837 -9.99322 -9.89839 -9.65613 -8.88732 -8.74721 -8.25866 -6.51731 -4.26032 2.53064 3.01461 3.36183 3.42633 3.55719 3.58631 4.29091 4.41356 4.58589 4.64612 4.68856 4.90522 4.97353 5.05434 5.11676 5.26527 5.37072 5.46309 5.66654 5.74158 5.78124 5.85531 5.89565 5.95350 6.02695 6.10537 6.15983 6.26284 6.34865 6.47373 6.82881 6.99091 7.06799 7.15856 7.91210 8.23722 8.27802 8.63069 9.40561 10.80259 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.008372 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.134643 B = 3343.860122 C = 4669.266844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.033 3.967 3 Si 1.053 2.947 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.590 4.590 8 H 0.059 0.941 9 C 0.004 3.996 10 C 0.092 3.908 11 O -0.325 6.325 12 C 0.489 3.511 13 O -0.513 6.513 14 C -0.132 4.132 15 C -0.108 4.108 16 C 0.061 3.939 17 F -0.217 7.217 18 C -0.147 4.147 19 C -0.147 4.147 20 C 0.041 3.959 21 O -0.406 6.406 22 C 0.046 3.954 23 H 0.270 0.730 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 -3.702 -10.753 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.173 4.173 3 Si 0.880 3.120 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.628 4.628 8 H 0.078 0.922 9 C 0.003 3.997 10 C 0.019 3.981 11 O -0.239 6.239 12 C 0.331 3.669 13 O -0.402 6.402 14 C -0.133 4.133 15 C -0.146 4.146 16 C 0.006 3.994 17 F -0.198 7.198 18 C -0.184 4.184 19 C -0.184 4.184 20 C -0.036 4.036 21 O -0.325 6.325 22 C -0.031 4.031 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.343 -2.265 -10.788 11.848 hybrid contribution 0.093 -1.411 0.229 1.433 sum 4.436 -3.676 -10.559 12.029 Atomic orbital electron populations 1.70862 1.07077 1.30928 1.44259 1.25781 0.96187 1.02535 0.92787 0.83793 0.75501 0.75724 0.77009 1.20623 1.21181 1.20880 1.21692 0.97571 0.91733 1.51757 0.92248 1.21038 0.93020 0.96151 0.89450 1.23010 0.90157 1.00415 0.84545 1.86463 1.41592 1.80656 1.15219 1.22285 0.87453 0.72871 0.84311 1.90628 1.17246 1.46177 1.86140 1.20789 1.01382 0.98503 0.92657 1.21643 0.96930 0.90765 1.05213 1.21963 0.91433 0.82101 1.03932 1.92757 1.73276 1.55571 1.98199 1.23163 1.00334 1.02174 0.92705 1.23118 0.99883 0.93522 1.01914 1.24274 0.98206 0.81617 0.99534 1.89455 1.35562 1.28555 1.78959 1.23934 0.89629 0.93004 0.96546 0.91822 0.93590 0.89731 0.88583 0.89557 0.90596 0.90471 0.87524 0.87354 0.87242 0.87967 0.90193 0.91267 0.91016 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.20 12.60 55.43 0.70 -24.50 16 2 C 0.03 0.88 5.15 -17.82 -0.09 0.79 16 3 Si 1.05 24.24 29.93 -169.99 -5.09 19.15 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.59 -15.39 8.22 -34.44 -0.28 -15.67 16 8 H 0.06 1.55 7.86 -52.48 -0.41 1.14 16 9 C 0.00 0.10 0.44 -154.58 -0.07 0.03 16 10 C 0.09 2.16 4.44 37.16 0.16 2.33 16 11 O -0.32 -7.10 10.02 -39.26 -0.39 -7.49 16 12 C 0.49 9.46 6.55 36.01 0.24 9.69 16 13 O -0.51 -11.12 16.35 -18.74 -0.31 -11.43 16 14 C -0.13 -1.87 2.03 -155.66 -0.32 -2.18 16 15 C -0.11 -1.44 5.55 -26.73 -0.15 -1.58 16 16 C 0.06 0.88 7.40 37.16 0.28 1.16 16 17 F -0.22 -3.50 17.36 2.25 0.04 -3.46 16 18 C -0.15 -1.61 9.77 -26.69 -0.26 -1.87 16 19 C -0.15 -1.61 9.93 -26.69 -0.27 -1.87 16 20 C 0.04 0.92 7.28 37.61 0.27 1.20 16 21 O -0.41 -9.06 12.37 -35.23 -0.44 -9.50 16 22 C 0.05 0.97 8.31 37.61 0.31 1.28 16 23 H 0.27 7.45 5.49 -40.82 -0.22 7.22 16 24 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 25 H 0.08 2.20 5.96 -51.93 -0.31 1.89 16 26 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 30 H 0.11 1.26 7.96 -51.93 -0.41 0.85 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.80 8.09 -51.93 -0.42 1.38 16 35 H 0.07 1.51 7.78 -51.93 -0.40 1.10 16 36 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 37 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -30.21 318.93 -6.02 -36.23 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.17 Total: 2.88 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.17 Total: -6.70 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.70 Total: -24.50 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.14 Total: -28.41 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.09 Total: 19.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.21 -6.02 -36.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526119013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.550 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds