Wall clock time and date at job start Mon Mar 30 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48490 * 109.47370 * 355.02212 * 3 2 1 5 5 H 1.48496 * 109.47210 * 115.02839 * 3 2 1 6 6 H 1.48507 * 109.46770 * 235.02384 * 3 2 1 7 7 C 1.37877 * 119.99681 * 180.27084 * 2 1 3 8 8 H 1.08004 * 119.99920 * 195.27068 * 7 2 1 9 9 C 1.50696 * 120.00329 * 15.26633 * 7 2 1 10 10 C 1.53002 * 112.99864 * 54.01482 * 9 7 2 11 11 O 1.45199 * 109.46695 * 63.54047 * 10 9 7 12 12 C 1.34231 * 116.99755 * 182.81402 * 11 10 9 13 13 O 1.20819 * 120.00186 * 5.37381 * 12 11 10 14 14 C 1.50703 * 119.99878 * 185.37222 * 12 11 10 15 15 C 1.52996 * 115.55581 * 296.24972 * 14 12 11 16 16 C 1.53003 * 109.46839 * 296.14907 * 15 14 12 17 17 F 1.39903 * 109.47215 * 180.26520 * 16 15 14 18 18 C 1.53004 * 117.49835 * 150.57546 * 14 12 11 19 19 C 1.53002 * 117.49805 * 81.91806 * 14 12 11 20 20 C 1.54045 * 113.81655 * 282.03242 * 9 7 2 21 21 O 1.44179 * 85.51418 * 223.19184 * 20 9 7 22 22 C 1.44178 * 93.34217 * 24.19512 * 21 20 9 23 23 H 0.96996 * 120.00337 * 185.97478 * 1 2 3 24 24 H 1.08998 * 109.46889 * 183.53270 * 10 9 7 25 25 H 1.08996 * 109.47253 * 303.53819 * 10 9 7 26 26 H 1.09004 * 109.47042 * 56.14097 * 15 14 12 27 27 H 1.08991 * 109.47625 * 176.14669 * 15 14 12 28 28 H 1.08994 * 109.47506 * 300.26728 * 16 15 14 29 29 H 1.09004 * 109.47071 * 60.27250 * 16 15 14 30 30 H 1.09001 * 117.49527 * 359.97438 * 18 14 12 31 31 H 1.08995 * 117.49824 * 145.02244 * 18 14 12 32 32 H 1.08998 * 117.50075 * 214.98213 * 19 14 12 33 33 H 1.09006 * 117.49896 * 359.97438 * 19 14 12 34 34 H 1.08996 * 113.86137 * 337.33971 * 20 9 7 35 35 H 1.09003 * 113.86121 * 109.04512 * 20 9 7 36 36 H 1.08996 * 113.85872 * 221.65690 * 22 21 20 37 37 H 1.09001 * 113.86575 * 89.94984 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2888 2.7438 -0.1215 5 1 3.0096 1.7503 1.2686 6 1 3.1917 1.6451 -1.1473 7 6 2.0045 -1.1941 -0.0056 8 1 3.0559 -1.2118 0.2406 9 6 1.2909 -2.4745 -0.3553 10 6 0.5636 -2.4056 -1.6997 11 8 1.5323 -2.2163 -2.7647 12 6 1.0498 -2.0766 -4.0095 13 8 -0.1430 -2.0140 -4.1916 14 6 1.9959 -1.9979 -5.1799 15 6 2.9311 -0.7872 -5.1923 16 6 2.1048 0.4942 -5.3189 17 9 2.9603 1.6011 -5.3363 18 6 1.4954 -2.5178 -6.5290 19 6 2.5375 -3.3146 -5.7402 20 6 0.4321 -3.0411 0.7912 21 8 0.9822 -4.3208 0.4193 22 6 2.1562 -3.7367 -0.1801 23 1 -0.4850 -0.8354 0.0874 24 1 0.0182 -3.3346 -1.8657 25 1 -0.1359 -1.5698 -1.6920 26 1 3.5032 -0.7604 -4.2648 27 1 3.6140 -0.8642 -6.0382 28 1 1.5290 0.4655 -6.2439 29 1 1.4253 0.5737 -4.4703 30 1 0.4820 -2.9171 -6.5699 31 1 1.8327 -1.9974 -7.4254 32 1 3.5599 -3.3182 -6.1179 33 1 2.2098 -4.2378 -5.2620 34 1 0.7373 -2.7005 1.7805 35 1 -0.6413 -2.9563 0.6215 36 1 2.4501 -4.2038 -1.1200 37 1 2.9878 -3.6086 0.5128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526119013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:22 Heat of formation + Delta-G solvation = -150.222387 kcal Electronic energy + Delta-G solvation = -22066.136833 eV Core-core repulsion = 18531.284003 eV Total energy + Delta-G solvation = -3534.852830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.67270 -41.95008 -41.16764 -38.64636 -37.31698 -35.36675 -32.29043 -31.50280 -27.93028 -27.43662 -26.19308 -25.38377 -24.14148 -23.34206 -20.86862 -20.69355 -19.29933 -18.49683 -17.87803 -17.63413 -17.10007 -16.84594 -16.65254 -16.53482 -16.15682 -15.90208 -15.61256 -15.31434 -14.84626 -14.30172 -13.92413 -13.76979 -13.52703 -13.36716 -12.98565 -12.75388 -12.65482 -12.50304 -12.34599 -12.02599 -11.90812 -11.81429 -11.70654 -11.51979 -11.33412 -11.07191 -10.73675 -10.66846 -10.24323 -8.62333 -6.36204 1.04742 1.50215 1.56651 1.58613 1.74688 2.51103 2.56813 2.87014 3.03646 3.26931 3.47976 3.63013 3.69151 3.88882 3.94000 3.95212 4.06642 4.10110 4.16248 4.39653 4.42385 4.46405 4.50780 4.66558 4.68115 4.80708 4.83663 4.91733 5.01481 5.03557 5.14952 5.23368 5.24490 5.51770 5.92964 6.13531 6.53334 6.68661 7.36116 8.71038 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.008372 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.134643 B = 3343.860122 C = 4669.266844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 1.088 2.912 4 H -0.289 1.289 5 H -0.264 1.264 6 H -0.275 1.275 7 C -0.594 4.594 8 H 0.057 0.943 9 C -0.013 4.013 10 C 0.103 3.897 11 O -0.336 6.336 12 C 0.481 3.519 13 O -0.545 6.545 14 C -0.160 4.160 15 C -0.098 4.098 16 C 0.057 3.943 17 F -0.226 7.226 18 C -0.129 4.129 19 C -0.127 4.127 20 C 0.046 3.954 21 O -0.408 6.408 22 C 0.055 3.945 23 H 0.264 0.736 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.038 0.962 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.978 -4.335 -12.605 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.209 4.209 3 Si 0.911 3.089 4 H -0.215 1.215 5 H -0.189 1.189 6 H -0.201 1.201 7 C -0.631 4.631 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.029 3.971 11 O -0.251 6.251 12 C 0.326 3.674 13 O -0.436 6.436 14 C -0.161 4.161 15 C -0.136 4.136 16 C 0.003 3.997 17 F -0.207 7.207 18 C -0.165 4.165 19 C -0.164 4.164 20 C -0.031 4.031 21 O -0.328 6.328 22 C -0.021 4.021 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.124 0.876 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.355 -2.919 -12.635 14.441 hybrid contribution -0.556 -1.261 0.767 1.577 sum 5.799 -4.180 -11.868 13.855 Atomic orbital electron populations 1.70931 1.07943 1.30693 1.46427 1.26812 0.96260 1.05440 0.92430 0.83320 0.74751 0.72628 0.78152 1.21529 1.18913 1.20097 1.21922 0.97462 0.92769 1.50954 0.92509 1.21186 0.94030 0.96371 0.89766 1.22673 0.90020 0.98953 0.85450 1.86474 1.41316 1.81151 1.16184 1.23482 0.88226 0.71231 0.84495 1.90598 1.19077 1.47586 1.86364 1.20899 1.02306 1.01080 0.91849 1.21609 0.96711 0.89338 1.05921 1.22068 0.91348 0.82560 1.03770 1.92735 1.73518 1.56279 1.98213 1.23356 1.00055 1.01110 0.91996 1.23342 1.01735 0.91284 0.99994 1.24166 0.98255 0.81619 0.99101 1.89444 1.36031 1.28271 1.79043 1.23990 0.89314 0.91312 0.97511 0.92536 0.93380 0.93097 0.90825 0.85233 0.87620 0.94376 0.88796 0.83682 0.83715 0.88560 0.90295 0.91118 0.89252 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 12.60 21.45 0.27 -53.13 16 2 C -0.01 -0.46 5.15 84.65 0.44 -0.02 16 3 Si 1.09 49.17 29.93 68.60 2.05 51.22 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.59 -31.12 8.22 25.60 0.21 -30.91 16 8 H 0.06 2.94 7.86 -2.91 -0.02 2.92 16 9 C -0.01 -0.61 0.44 -52.23 -0.02 -0.63 16 10 C 0.10 4.97 4.44 71.98 0.32 5.29 16 11 O -0.34 -14.92 10.02 -51.43 -0.52 -15.43 16 12 C 0.48 18.77 6.55 71.24 0.47 19.23 16 13 O -0.55 -24.34 16.35 21.99 0.36 -23.98 16 14 C -0.16 -4.20 2.03 -52.93 -0.11 -4.30 16 15 C -0.10 -2.38 5.55 30.59 0.17 -2.21 16 16 C 0.06 1.61 7.40 71.98 0.53 2.14 16 17 F -0.23 -7.03 17.36 44.97 0.78 -6.25 16 18 C -0.13 -2.36 9.77 30.62 0.30 -2.07 16 19 C -0.13 -2.28 9.93 30.62 0.30 -1.98 16 20 C 0.05 2.08 7.28 72.28 0.53 2.61 16 21 O -0.41 -17.89 12.37 -148.98 -1.84 -19.74 16 22 C 0.06 2.28 8.31 72.27 0.60 2.88 16 23 H 0.26 15.10 5.49 -92.71 -0.51 14.59 16 24 H 0.05 2.23 8.09 -2.39 -0.02 2.21 16 25 H 0.05 2.78 5.96 -2.39 -0.01 2.77 16 26 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.13 2.04 8.10 -2.39 -0.02 2.02 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 29 H 0.04 1.35 7.68 -2.38 -0.02 1.33 16 30 H 0.09 2.01 7.96 -2.39 -0.02 1.99 16 31 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.08 3.57 8.09 -2.39 -0.02 3.55 16 35 H 0.07 3.15 7.78 -2.39 -0.02 3.14 16 36 H 0.09 3.37 8.10 -2.39 -0.02 3.35 16 37 H 0.08 3.28 8.09 -2.39 -0.02 3.26 16 Total: -1.00 -67.09 318.93 6.17 -60.93 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.33 Total: 16.35 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.73 Total: -9.97 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.27 Total: -53.13 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -2.00 Total: -59.15 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.78 Total: -6.25 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.05 Total: 51.22 kcal Total: -67.09 6.17 -60.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526119013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.296 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds